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I want to convert the layers in the h5ad file to a Seurat object. How should I proceed? #11

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bijingnibaba opened this issue Jan 18, 2025 · 1 comment
Open

I want to convert the layers in the h5ad file to a Seurat object. How should I proceed? #11

bijingnibaba opened this issue Jan 18, 2025 · 1 comment

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@bijingnibaba
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I want to convert the layers in the h5ad file to a Seurat object. How should I proceed?
@iaaka
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iaaka commented Jan 20, 2025

Hi, for now there is no build in option for taking data from layers. I can only suggest to load matrix by something like schard::h5ad2Matrix('adata.h5ad','/layers/spliced') and to use it to construct/modify Seurat object manually.

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@iaaka @bijingnibaba