cgat-apps.yml

# output generated by /ifs/devel/sebastian/cgat-developers/cgat-apps/scripts/cgat_conda_deps.sh --all
# on Wed Mar 14 10:25:03 GMT 2018

name: cgat-a

channels:
- conda-forge
- bioconda
- defaults

dependencies:
# python dependencies
- python
- alignlib-lite
- biopython
- cython
- cgatcore
- matplotlib
- pytest
- numpy
- pandas
- pep8
- pybedtools
- pybigwig
- pysam
- pyyaml
- quicksect
- rdflib
- scikit-learn
- scipy
- setuptools
- sortedcontainers
- bedtools
- grep
- htslib
- samtools
- tar
- ucsc-bedgraphtobigwig
- ucsc-wigtobigwig
# does not exist on OSX
- wget
- zlib