From 61b4f3256ff9c35190cb32fe4c30cf207eff3956 Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Wed, 14 Aug 2024 08:54:10 +0200
Subject: [PATCH 01/20] Boot the 2.3.7 version

---
 CMakeLists.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CMakeLists.txt b/CMakeLists.txt
index cac2ca2d..f6c7492d 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -1,7 +1,7 @@
 cmake_minimum_required(VERSION 3.10)
 set(MOORDYN_MAJOR_VERSION 2)
 set(MOORDYN_MINOR_VERSION 3)
-set(MOORDYN_PATCH_VERSION 6)
+set(MOORDYN_PATCH_VERSION 7)
 set(MOORDYN_VERSION ${MOORDYN_MAJOR_VERSION}.${MOORDYN_MINOR_VERSION})
 project(Moordyn VERSION ${MOORDYN_VERSION})
 

From f534b48bd9eb508b00e6ff102e62a7d84addea0a Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Wed, 14 Aug 2024 13:09:54 +0200
Subject: [PATCH 02/20] fix(python-wheels): Test the wheels

---
 .github/workflows/python-wheels-test.yml | 48 ++++++++++++++++++++++++
 .github/workflows/python-wheels.yml      | 39 ++++++++++++++++++-
 2 files changed, 85 insertions(+), 2 deletions(-)
 create mode 100644 .github/workflows/python-wheels-test.yml

diff --git a/.github/workflows/python-wheels-test.yml b/.github/workflows/python-wheels-test.yml
new file mode 100644
index 00000000..443fe114
--- /dev/null
+++ b/.github/workflows/python-wheels-test.yml
@@ -0,0 +1,48 @@
+name: Python-manylinux-arch
+
+on:
+  workflow_call:
+    inputs:
+      os:
+        description: 'Host OS'
+        required: false
+        type: string
+        default: '["ubuntu-22.04"]'
+      arch:
+        description: 'Architecture target'
+        required: true
+        type: string
+        
+permissions: write-all
+
+jobs:
+  test_wheels:
+    name: Test Python wheels
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: ${{ fromJSON(inputs.os) }}
+      
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.12' 
+
+      - name: Download the wheels
+        uses: actions/download-artifact@v4
+        with:
+          path: dist/
+          pattern: python-wheels-${{runner.os}}_${{inputs.arch}}*
+          merge-multiple: true
+
+      - name: Install and run
+        run: |
+            cd dist/
+            pip debug --verbose
+            ls -alh
+            pip install $(ls *cp312*.whl) --break-system-packages
+            cd ../tests
+            python test_minimal.py
+        shell: bash
diff --git a/.github/workflows/python-wheels.yml b/.github/workflows/python-wheels.yml
index 9eaf8b8c..eb47dab1 100644
--- a/.github/workflows/python-wheels.yml
+++ b/.github/workflows/python-wheels.yml
@@ -69,10 +69,18 @@ jobs:
     name: Build MacOS_x86_64
     uses: FloatingArrayDesign/MoorDyn/.github/workflows/python-wheels-emulated.yml@master
     with:
-      os: '["macOS-latest"]'
+      os: '["macOS-13"]'
       arch: "x86_64"
     secrets: inherit
 
+  build_MacOS_arm64:
+    name: Build MacOS_arm64
+    uses: FloatingArrayDesign/MoorDyn/.github/workflows/python-wheels-emulated.yml@master
+    with:
+      os: '["macOS-14"]'
+      arch: "arm64"
+    secrets: inherit
+
   build_Linux_i686:
     name: Build Linux_i686
     uses: FloatingArrayDesign/MoorDyn/.github/workflows/python-wheels-emulated.yml@master
@@ -105,9 +113,36 @@ jobs:
       arch: "s390x"
     secrets: inherit
 
+  test_Linux_x86_64:
+    name: Test Linux_x86_64
+    needs: [build_Linux_x86_64]
+    uses: FloatingArrayDesign/MoorDyn/.github/workflows/python-wheels-test.yml@master
+    with:
+      os: '["ubuntu-22.04"]'
+      arch: "x86_64"
+    secrets: inherit
+
+  test_Windows_AMD64:
+    name: Test Windows_AMD64
+    needs: [build_Windows_AMD64]
+    uses: FloatingArrayDesign/MoorDyn/.github/workflows/python-wheels-test.yml@master
+    with:
+      os: '["windows-latest"]'
+      arch: "AMD64"
+    secrets: inherit
+
+  test_MacOS_arm64:
+    name: Test MacOS_arm64
+    needs: [build_MacOS_arm64]
+    uses: FloatingArrayDesign/MoorDyn/.github/workflows/python-wheels-test.yml@master
+    with:
+      os: '["macOS-14"]'
+      arch: "arm64"
+    secrets: inherit
+
   publish:
     runs-on: ${{ matrix.os }}
-    needs: [build_wheels, build_Linux_x86_64, build_Windows_AMD64, build_MacOS_x86_64, build_Linux_i686, build_Linux_aarch64, build_Linux_ppc64le, build_Linux_s390x]
+    needs: [build_wheels, build_Linux_x86_64, build_Windows_AMD64, build_MacOS_x86_64, build_Linux_i686, build_Linux_aarch64, build_Linux_ppc64le, build_Linux_s390x, test_Linux_x86_64, test_Windows_AMD64, test_MacOS_x86_64]
     strategy:
         matrix:
             os: [ubuntu-22.04]

From 154ab66d5d7442ad15fd31a855577a848f91f5a9 Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 06:35:33 +0200
Subject: [PATCH 03/20] fix(ci): Update to VTK-9.3.1

---
 .github/workflows/build-test.yml     | 4 ++--
 .github/workflows/python-wheels.yml  | 4 ++--
 .github/workflows/python-wrapper.yml | 4 ++--
 3 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/build-test.yml b/.github/workflows/build-test.yml
index 1db65889..0a447c5b 100644
--- a/.github/workflows/build-test.yml
+++ b/.github/workflows/build-test.yml
@@ -13,8 +13,8 @@ env:
   # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
   BUILD_TYPE: Release
   VTK_VERSION_MAJOR: 9
-  VTK_VERSION_MINOR: 2
-  VTK_VERSION_PATCH: 6
+  VTK_VERSION_MINOR: 3
+  VTK_VERSION_PATCH: 1
 
 jobs:
   create_release:
diff --git a/.github/workflows/python-wheels.yml b/.github/workflows/python-wheels.yml
index eb47dab1..05d34561 100644
--- a/.github/workflows/python-wheels.yml
+++ b/.github/workflows/python-wheels.yml
@@ -10,8 +10,8 @@ env:
   # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
   BUILD_TYPE: Release
   VTK_VERSION_MAJOR: 9
-  VTK_VERSION_MINOR: 2
-  VTK_VERSION_PATCH: 6
+  VTK_VERSION_MINOR: 3
+  VTK_VERSION_PATCH: 1
 
 jobs:
   build_wheels:
diff --git a/.github/workflows/python-wrapper.yml b/.github/workflows/python-wrapper.yml
index ed80d237..9b3191dc 100644
--- a/.github/workflows/python-wrapper.yml
+++ b/.github/workflows/python-wrapper.yml
@@ -13,8 +13,8 @@ env:
   # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
   BUILD_TYPE: Release
   VTK_VERSION_MAJOR: 9
-  VTK_VERSION_MINOR: 2
-  VTK_VERSION_PATCH: 6
+  VTK_VERSION_MINOR: 3
+  VTK_VERSION_PATCH: 1
 
 jobs:
   test:

From 7f20dab357b8863320d35bee1723f21099900023 Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 06:36:12 +0200
Subject: [PATCH 04/20] fix(python): Enable MUSLLinux builds

---
 .github/workflows/python-wheels-emulated.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-wheels-emulated.yml b/.github/workflows/python-wheels-emulated.yml
index c3144449..6fbcacec 100644
--- a/.github/workflows/python-wheels-emulated.yml
+++ b/.github/workflows/python-wheels-emulated.yml
@@ -24,7 +24,7 @@ jobs:
         os: ${{ fromJSON(inputs.os) }}
     env:
       # Skip 32-bit windows wheels builds.
-      CIBW_SKIP: "*-win32* *musllinux* pp38* pp39* pp310*"
+      CIBW_SKIP: "*-win32* pp38* pp39* pp310*"
       CIBW_ARCHS: ${{inputs.arch}}
       CIBW_ENVIRONMENT_LINUX: "LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/project/install/lib"
       CIBW_BEFORE_ALL_LINUX: >

From 224f8e4f31271a96b6a4ef170d8337d252305cb7 Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 06:36:40 +0200
Subject: [PATCH 05/20] fix(python): Enable pypy builds again

---
 .github/workflows/python-wheels-emulated.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-wheels-emulated.yml b/.github/workflows/python-wheels-emulated.yml
index 6fbcacec..3d06e5c4 100644
--- a/.github/workflows/python-wheels-emulated.yml
+++ b/.github/workflows/python-wheels-emulated.yml
@@ -24,7 +24,7 @@ jobs:
         os: ${{ fromJSON(inputs.os) }}
     env:
       # Skip 32-bit windows wheels builds.
-      CIBW_SKIP: "*-win32* pp38* pp39* pp310*"
+      CIBW_SKIP: "*-win32*"
       CIBW_ARCHS: ${{inputs.arch}}
       CIBW_ENVIRONMENT_LINUX: "LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/project/install/lib"
       CIBW_BEFORE_ALL_LINUX: >

From 2c9ea79d89002287bc0e718dcd433b9c891a3b92 Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 06:41:02 +0200
Subject: [PATCH 06/20] fix(ci): List of dependencies to publish a package

---
 .github/workflows/python-wheels.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-wheels.yml b/.github/workflows/python-wheels.yml
index 05d34561..06660e7b 100644
--- a/.github/workflows/python-wheels.yml
+++ b/.github/workflows/python-wheels.yml
@@ -142,7 +142,7 @@ jobs:
 
   publish:
     runs-on: ${{ matrix.os }}
-    needs: [build_wheels, build_Linux_x86_64, build_Windows_AMD64, build_MacOS_x86_64, build_Linux_i686, build_Linux_aarch64, build_Linux_ppc64le, build_Linux_s390x, test_Linux_x86_64, test_Windows_AMD64, test_MacOS_x86_64]
+    needs: [build_wheels, build_Linux_x86_64, build_Windows_AMD64, build_MacOS_x86_64, build_MacOS_arm64, build_Linux_i686, build_Linux_aarch64, build_Linux_ppc64le, build_Linux_s390x, test_Linux_x86_64, test_Windows_AMD64, test_MacOS_arm64]
     strategy:
         matrix:
             os: [ubuntu-22.04]

From 3be24786c21753f8aaba898ee4bdf551ca3196af Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 07:00:01 +0200
Subject: [PATCH 07/20] fix(ci): Setting the VTK version

---
 .github/workflows/python-wheels-emulated.yml | 28 +++++++++++++++-----
 1 file changed, 22 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/python-wheels-emulated.yml b/.github/workflows/python-wheels-emulated.yml
index 3d06e5c4..58404ad6 100644
--- a/.github/workflows/python-wheels-emulated.yml
+++ b/.github/workflows/python-wheels-emulated.yml
@@ -12,6 +12,21 @@ on:
         description: 'Architecture target'
         required: true
         type: string
+      vtk_major:
+        description: 'VTK major version'
+        required: false
+        type: string
+        default: '9'
+      vtk_minor:
+        description: 'VTK minor version'
+        required: false
+        type: string
+        default: '3'
+      vtk_patch:
+        description: 'VTK patch version'
+        required: false
+        type: string
+        default: '1'
         
 permissions: write-all
 
@@ -32,9 +47,9 @@ jobs:
         mkdir -p vtk &&
         tar -xvzf vtk-manylinux2014_`uname -m`.tar.gz -C vtk/ &&
         if [ -d "vtk/lib" ]; then
-            VTK_DIR=vtk/lib/cmake/vtk-9.2/
+            VTK_DIR=$(ls -d vtk/lib/cmake/vtk-*)
         else
-            VTK_DIR=vtk/lib64/cmake/vtk-9.2/        
+            VTK_DIR=$(ls -d vtk/lib64/cmake/vtk-*)
         fi &&
         cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DVTK_DIR=$VTK_DIR -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=ON -DBUILD_TESTING=OFF &&
         cmake --build build --config Release &&
@@ -42,13 +57,14 @@ jobs:
         rm -rf docs extern source tests
       CIBW_BEFORE_BUILD_WINDOWS: "pip install delvewheel"
       CIBW_BEFORE_ALL_WINDOWS: >
-        cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DVTK_DIR=vtk/lib/cmake/vtk-9.2/ -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=ON -DBUILD_TESTING=OFF &&
+        VTK_DIR=$(ls -d vtk/lib/cmake/vtk-*) &&
+        cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DVTK_DIR=$VTK_DIR -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=ON -DBUILD_TESTING=OFF &&
         cmake --build build --config Release &&
         cmake --install build --config Release &&
         rm -rf docs extern source tests
       CIBW_REPAIR_WHEEL_COMMAND_WINDOWS: "delvewheel repair --add-path install/bin -w {dest_dir} {wheel}"
       CIBW_BEFORE_ALL_MACOS: >
-        cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=ON -DBUILD_TESTING=OFF -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 &&
+        cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=OFF -DBUILD_TESTING=OFF -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 &&
         cmake --build build --config Release &&
         cmake --install build --config Release &&
         rm -rf docs extern source tests
@@ -73,14 +89,14 @@ jobs:
       - name: download pre-built VTK static library (Linux)
         uses: suisei-cn/actions-download-file@v1.6.0
         with:
-          url: https://github.com/sanguinariojoe/vtk-builds/releases/download/VTK-9.2.6-static/vtk-manylinux2014_${{inputs.arch}}.tar.gz
+          url: https://github.com/sanguinariojoe/vtk-builds/releases/download/VTK-${{inputs.vtk_major}}.${{inputs.vtk_minor}}.${{inputs.vtk_patch}}-static/vtk-manylinux2014_${{inputs.arch}}.tar.gz
           target: ${{github.workspace}}/
         if: runner.os == 'Linux'
 
       - name: download pre-built VTK static library (Windows)
         uses: suisei-cn/actions-download-file@v1.6.0
         with:
-          url: https://github.com/sanguinariojoe/vtk-builds/releases/download/VTK-9.2.6-static/vtk-Windows-x86_64.tar.gz
+          url: https://github.com/sanguinariojoe/vtk-builds/releases/download/VTK-${{inputs.vtk_major}}.${{inputs.vtk_minor}}.${{inputs.vtk_patch}}-static/vtk-Windows-x86_64.tar.gz
           target: ${{github.workspace}}/
         if: runner.os == 'Windows'
 

From 584bda5581864d779d467875ee2b1a459cab8b91 Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 07:05:55 +0200
Subject: [PATCH 08/20] fix(ci): Removed unused env variables

---
 .github/workflows/python-wheels.yml | 7 -------
 1 file changed, 7 deletions(-)

diff --git a/.github/workflows/python-wheels.yml b/.github/workflows/python-wheels.yml
index 06660e7b..63701445 100644
--- a/.github/workflows/python-wheels.yml
+++ b/.github/workflows/python-wheels.yml
@@ -6,13 +6,6 @@ on:
 
 permissions: write-all
 
-env:
-  # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
-  BUILD_TYPE: Release
-  VTK_VERSION_MAJOR: 9
-  VTK_VERSION_MINOR: 3
-  VTK_VERSION_PATCH: 1
-
 jobs:
   build_wheels:
     name: Build Python wheels x86_64

From e5280542245ae5e7617aafb011c0f0f7a85cf7f9 Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 07:11:28 +0200
Subject: [PATCH 09/20] fix(ci): Use directly the VTK version placeholders

---
 .github/workflows/python-wheels-emulated.yml | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/python-wheels-emulated.yml b/.github/workflows/python-wheels-emulated.yml
index 58404ad6..3d1ed1dd 100644
--- a/.github/workflows/python-wheels-emulated.yml
+++ b/.github/workflows/python-wheels-emulated.yml
@@ -47,9 +47,9 @@ jobs:
         mkdir -p vtk &&
         tar -xvzf vtk-manylinux2014_`uname -m`.tar.gz -C vtk/ &&
         if [ -d "vtk/lib" ]; then
-            VTK_DIR=$(ls -d vtk/lib/cmake/vtk-*)
+            VTK_DIR=vtk/lib/cmake/vtk-${{inputs.vtk_major}}.${{inputs.vtk_minor}}
         else
-            VTK_DIR=$(ls -d vtk/lib64/cmake/vtk-*)
+            VTK_DIR=vtk/lib64/cmake/vtk-${{inputs.vtk_major}}.${{inputs.vtk_minor}}
         fi &&
         cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DVTK_DIR=$VTK_DIR -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=ON -DBUILD_TESTING=OFF &&
         cmake --build build --config Release &&
@@ -57,8 +57,7 @@ jobs:
         rm -rf docs extern source tests
       CIBW_BEFORE_BUILD_WINDOWS: "pip install delvewheel"
       CIBW_BEFORE_ALL_WINDOWS: >
-        VTK_DIR=$(ls -d vtk/lib/cmake/vtk-*) &&
-        cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DVTK_DIR=$VTK_DIR -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=ON -DBUILD_TESTING=OFF &&
+        cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DVTK_DIR=vtk/lib/cmake/vtk-${{inputs.vtk_major}}.${{inputs.vtk_minor}} -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=ON -DBUILD_TESTING=OFF &&
         cmake --build build --config Release &&
         cmake --install build --config Release &&
         rm -rf docs extern source tests

From 63d8b723595a438410b8fbb9ba4fc86e6079bbe5 Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 07:14:19 +0200
Subject: [PATCH 10/20] Temporary disable pypy builds which are broken

---
 .github/workflows/python-wheels-emulated.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-wheels-emulated.yml b/.github/workflows/python-wheels-emulated.yml
index 3d1ed1dd..3520e0bb 100644
--- a/.github/workflows/python-wheels-emulated.yml
+++ b/.github/workflows/python-wheels-emulated.yml
@@ -39,7 +39,7 @@ jobs:
         os: ${{ fromJSON(inputs.os) }}
     env:
       # Skip 32-bit windows wheels builds.
-      CIBW_SKIP: "*-win32*"
+      CIBW_SKIP: "*-win32* pp38-* pp39-* pp310-*"
       CIBW_ARCHS: ${{inputs.arch}}
       CIBW_ENVIRONMENT_LINUX: "LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/project/install/lib"
       CIBW_BEFORE_ALL_LINUX: >

From a521444281e9117c09135640f49154c2d3d0a18a Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 07:34:01 +0200
Subject: [PATCH 11/20] fix(python): Avoid using brew on MacOS-13 statically
 linking VTK

---
 .github/workflows/python-wheels-emulated.yml | 13 +++++++++----
 1 file changed, 9 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/python-wheels-emulated.yml b/.github/workflows/python-wheels-emulated.yml
index 3520e0bb..a5ff12af 100644
--- a/.github/workflows/python-wheels-emulated.yml
+++ b/.github/workflows/python-wheels-emulated.yml
@@ -63,7 +63,10 @@ jobs:
         rm -rf docs extern source tests
       CIBW_REPAIR_WHEEL_COMMAND_WINDOWS: "delvewheel repair --add-path install/bin -w {dest_dir} {wheel}"
       CIBW_BEFORE_ALL_MACOS: >
-        cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=OFF -DBUILD_TESTING=OFF -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 &&
+        echo "Considering vtk-macOS_`uname -m`.tar.gz..." &&
+        mkdir -p vtk &&
+        tar -xvzf vtk-macOS_`uname -m`.tar.gz -C vtk/ &&
+        cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DVTK_DIR=vtk/lib/cmake/vtk-${{inputs.vtk_major}}.${{inputs.vtk_minor}} -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=ON -DBUILD_TESTING=OFF -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 &&
         cmake --build build --config Release &&
         cmake --install build --config Release &&
         rm -rf docs extern source tests
@@ -99,9 +102,11 @@ jobs:
           target: ${{github.workspace}}/
         if: runner.os == 'Windows'
 
-      - name: Install VTK (MacOS)
-        run: |
-          brew install vtk
+      - name: download pre-built VTK static library (MacOS)
+        uses: suisei-cn/actions-download-file@v1.6.0
+        with:
+          url: https://github.com/sanguinariojoe/vtk-builds/releases/download/VTK-${{inputs.vtk_major}}.${{inputs.vtk_minor}}.${{inputs.vtk_patch}}-static/vtk-macOS_${{inputs.arch}}.tar.gz
+          target: ${{github.workspace}}/
         if: runner.os == 'MacOS'
 
       - name: Create folders

From 32a9fcae8a8aee0558c632fe236f92d9e6bfda8d Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 07:41:08 +0200
Subject: [PATCH 12/20] fix(python): Set the install name id on MacOS

---
 .github/workflows/python-wheels-emulated.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-wheels-emulated.yml b/.github/workflows/python-wheels-emulated.yml
index a5ff12af..c310ce9e 100644
--- a/.github/workflows/python-wheels-emulated.yml
+++ b/.github/workflows/python-wheels-emulated.yml
@@ -66,7 +66,7 @@ jobs:
         echo "Considering vtk-macOS_`uname -m`.tar.gz..." &&
         mkdir -p vtk &&
         tar -xvzf vtk-macOS_`uname -m`.tar.gz -C vtk/ &&
-        cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DVTK_DIR=vtk/lib/cmake/vtk-${{inputs.vtk_major}}.${{inputs.vtk_minor}} -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=ON -DBUILD_TESTING=OFF -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 &&
+        cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DVTK_DIR=vtk/lib/cmake/vtk-${{inputs.vtk_major}}.${{inputs.vtk_minor}} -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=ON -DBUILD_TESTING=OFF -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 -DCMAKE_INSTALL_NAME_DIR:PATH=$(pwd)/install/lib &&
         cmake --build build --config Release &&
         cmake --install build --config Release &&
         rm -rf docs extern source tests

From 9422fb21063254dc3e943f5a8b0399341aed491b Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 07:48:12 +0200
Subject: [PATCH 13/20] fix(ci): The VTK tar.gz can be directly extracted on
 MacOS

---
 .github/workflows/python-wheels-emulated.yml | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/python-wheels-emulated.yml b/.github/workflows/python-wheels-emulated.yml
index c310ce9e..4dab83ef 100644
--- a/.github/workflows/python-wheels-emulated.yml
+++ b/.github/workflows/python-wheels-emulated.yml
@@ -63,9 +63,6 @@ jobs:
         rm -rf docs extern source tests
       CIBW_REPAIR_WHEEL_COMMAND_WINDOWS: "delvewheel repair --add-path install/bin -w {dest_dir} {wheel}"
       CIBW_BEFORE_ALL_MACOS: >
-        echo "Considering vtk-macOS_`uname -m`.tar.gz..." &&
-        mkdir -p vtk &&
-        tar -xvzf vtk-macOS_`uname -m`.tar.gz -C vtk/ &&
         cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DVTK_DIR=vtk/lib/cmake/vtk-${{inputs.vtk_major}}.${{inputs.vtk_minor}} -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=ON -DBUILD_TESTING=OFF -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 -DCMAKE_INSTALL_NAME_DIR:PATH=$(pwd)/install/lib &&
         cmake --build build --config Release &&
         cmake --install build --config Release &&
@@ -120,6 +117,11 @@ jobs:
             tar -xvzf vtk-Windows-x86_64.tar.gz -C vtk/
         if: runner.os == 'Windows'
 
+      - name: Extract VTK tgz (MacOS)
+        run: |
+            tar -xvzf vtk-macOS_${{inputs.arch}}.tar.gz -C vtk/
+        if: runner.os == 'MacOS'
+
       - name: Set up QEMU
         uses: docker/setup-qemu-action@v3
         with:

From 63698bd87f4224c8d062f4b3b732b2f52e5dbeef Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 07:50:10 +0200
Subject: [PATCH 14/20] fix(ci): Ignore MUSLLinux wheels when testing

---
 .github/workflows/python-wheels-test.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-wheels-test.yml b/.github/workflows/python-wheels-test.yml
index 443fe114..5a6b69be 100644
--- a/.github/workflows/python-wheels-test.yml
+++ b/.github/workflows/python-wheels-test.yml
@@ -42,7 +42,7 @@ jobs:
             cd dist/
             pip debug --verbose
             ls -alh
-            pip install $(ls *cp312*.whl) --break-system-packages
+            pip install $(ls *cp312*.whl -I "*musllinux*") --break-system-packages
             cd ../tests
             python test_minimal.py
         shell: bash

From 6ef95f92ab826f8f4e09661728a54f7d6cb3d870 Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 07:57:25 +0200
Subject: [PATCH 15/20] fix(ci): Wrong VTK URI

---
 .github/workflows/python-wheels-emulated.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/python-wheels-emulated.yml b/.github/workflows/python-wheels-emulated.yml
index 4dab83ef..d51cafae 100644
--- a/.github/workflows/python-wheels-emulated.yml
+++ b/.github/workflows/python-wheels-emulated.yml
@@ -102,7 +102,7 @@ jobs:
       - name: download pre-built VTK static library (MacOS)
         uses: suisei-cn/actions-download-file@v1.6.0
         with:
-          url: https://github.com/sanguinariojoe/vtk-builds/releases/download/VTK-${{inputs.vtk_major}}.${{inputs.vtk_minor}}.${{inputs.vtk_patch}}-static/vtk-macOS_${{inputs.arch}}.tar.gz
+          url: https://github.com/sanguinariojoe/vtk-builds/releases/download/VTK-${{inputs.vtk_major}}.${{inputs.vtk_minor}}.${{inputs.vtk_patch}}-static/vtk-macOS-${{inputs.arch}}.tar.gz
           target: ${{github.workspace}}/
         if: runner.os == 'MacOS'
 
@@ -119,7 +119,7 @@ jobs:
 
       - name: Extract VTK tgz (MacOS)
         run: |
-            tar -xvzf vtk-macOS_${{inputs.arch}}.tar.gz -C vtk/
+            tar -xvzf vtk-macOS-${{inputs.arch}}.tar.gz -C vtk/
         if: runner.os == 'MacOS'
 
       - name: Set up QEMU

From f44e9c4df1c1c9645d1a08255f16722baa519188 Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 08:09:10 +0200
Subject: [PATCH 16/20] fix(python): Set the MACOSX_DEPLOYMENT_TARGET to 10.15

---
 .github/workflows/python-wheels-emulated.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/python-wheels-emulated.yml b/.github/workflows/python-wheels-emulated.yml
index d51cafae..d30d9163 100644
--- a/.github/workflows/python-wheels-emulated.yml
+++ b/.github/workflows/python-wheels-emulated.yml
@@ -62,6 +62,7 @@ jobs:
         cmake --install build --config Release &&
         rm -rf docs extern source tests
       CIBW_REPAIR_WHEEL_COMMAND_WINDOWS: "delvewheel repair --add-path install/bin -w {dest_dir} {wheel}"
+      CIBW_ENVIRONMENT_MACOS: 'MACOSX_DEPLOYMENT_TARGET="10.15"'
       CIBW_BEFORE_ALL_MACOS: >
         cmake -B build -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=install -DEXTERNAL_EIGEN:BOOL=OFF -DPYTHON_WRAPPER:BOOL=OFF -DFORTRAN_WRAPPER:BOOL=OFF -DRUST_WRAPPER:BOOL=OFF -DUSE_VTK=ON -DVTK_DIR=vtk/lib/cmake/vtk-${{inputs.vtk_major}}.${{inputs.vtk_minor}} -DMOORDYN_PACKAGE_IGNORE_VTK_DEPENDENCY=ON -DBUILD_TESTING=OFF -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 -DCMAKE_INSTALL_NAME_DIR:PATH=$(pwd)/install/lib &&
         cmake --build build --config Release &&

From 20a35bf0ad51f4500b84b03e266848f503665720 Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 08:18:01 +0200
Subject: [PATCH 17/20] fix(ci): Remove the MUSLLinux wheels before testing

---
 .github/workflows/python-wheels-test.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/python-wheels-test.yml b/.github/workflows/python-wheels-test.yml
index 5a6b69be..0c959706 100644
--- a/.github/workflows/python-wheels-test.yml
+++ b/.github/workflows/python-wheels-test.yml
@@ -40,9 +40,10 @@ jobs:
       - name: Install and run
         run: |
             cd dist/
+            rm -f *musllinux*.whl
             pip debug --verbose
             ls -alh
-            pip install $(ls *cp312*.whl -I "*musllinux*") --break-system-packages
+            pip install $(ls *cp312*.whl) --break-system-packages
             cd ../tests
             python test_minimal.py
         shell: bash

From c005d68c9fd29563e88298414ca3d7ea49b50bd9 Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 09:53:35 +0200
Subject: [PATCH 18/20] Temporary disable PowerPC on MUSLLinux, since there is
 a long double inconsistency

---
 .github/workflows/python-wheels-emulated.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-wheels-emulated.yml b/.github/workflows/python-wheels-emulated.yml
index d30d9163..8dc1f936 100644
--- a/.github/workflows/python-wheels-emulated.yml
+++ b/.github/workflows/python-wheels-emulated.yml
@@ -39,7 +39,7 @@ jobs:
         os: ${{ fromJSON(inputs.os) }}
     env:
       # Skip 32-bit windows wheels builds.
-      CIBW_SKIP: "*-win32* pp38-* pp39-* pp310-*"
+      CIBW_SKIP: "*-win32* pp38-* pp39-* pp310-* *musllinux*ppc64le*"
       CIBW_ARCHS: ${{inputs.arch}}
       CIBW_ENVIRONMENT_LINUX: "LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/project/install/lib"
       CIBW_BEFORE_ALL_LINUX: >

From e5fe6190d5fdc67f6bb48c3fc7133a6ed5c5a4ec Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Mon, 19 Aug 2024 13:20:25 +0200
Subject: [PATCH 19/20] fix(python): Use the MUSLLinux VTK compilation when
 needed

---
 .github/workflows/python-wheels-emulated.yml | 20 ++++++++++++++++----
 1 file changed, 16 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/python-wheels-emulated.yml b/.github/workflows/python-wheels-emulated.yml
index 8dc1f936..1059faa8 100644
--- a/.github/workflows/python-wheels-emulated.yml
+++ b/.github/workflows/python-wheels-emulated.yml
@@ -39,13 +39,18 @@ jobs:
         os: ${{ fromJSON(inputs.os) }}
     env:
       # Skip 32-bit windows wheels builds.
-      CIBW_SKIP: "*-win32* pp38-* pp39-* pp310-* *musllinux*ppc64le*"
+      CIBW_SKIP: "*-win32* pp38-* pp39-* pp310-*"
       CIBW_ARCHS: ${{inputs.arch}}
       CIBW_ENVIRONMENT_LINUX: "LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/project/install/lib"
       CIBW_BEFORE_ALL_LINUX: >
-        echo "Considering vtk-manylinux2014_`uname -m`.tar.gz..." &&
+        if pip debug --verbose | grep -q 'musllinux'; then
+            DISTRO=musllinux_1_2
+        else
+            DISTRO=manylinux2014
+        fi &&
+        echo "Considering vtk-${DISTRO}_`uname -m`.tar.gz..." &&
         mkdir -p vtk &&
-        tar -xvzf vtk-manylinux2014_`uname -m`.tar.gz -C vtk/ &&
+        tar -xvzf vtk-${DISTRO}_`uname -m`.tar.gz -C vtk/ &&
         if [ -d "vtk/lib" ]; then
             VTK_DIR=vtk/lib/cmake/vtk-${{inputs.vtk_major}}.${{inputs.vtk_minor}}
         else
@@ -86,13 +91,20 @@ jobs:
             cat pyproject.toml
         shell: bash
 
-      - name: download pre-built VTK static library (Linux)
+      - name: download pre-built VTK static library (ManyLinux)
         uses: suisei-cn/actions-download-file@v1.6.0
         with:
           url: https://github.com/sanguinariojoe/vtk-builds/releases/download/VTK-${{inputs.vtk_major}}.${{inputs.vtk_minor}}.${{inputs.vtk_patch}}-static/vtk-manylinux2014_${{inputs.arch}}.tar.gz
           target: ${{github.workspace}}/
         if: runner.os == 'Linux'
 
+      - name: download pre-built VTK static library (MUSLLinux)
+        uses: suisei-cn/actions-download-file@v1.6.0
+        with:
+          url: https://github.com/sanguinariojoe/vtk-builds/releases/download/VTK-${{inputs.vtk_major}}.${{inputs.vtk_minor}}.${{inputs.vtk_patch}}-static/vtk-musllinux_1_2_${{inputs.arch}}.tar.gz
+          target: ${{github.workspace}}/
+        if: runner.os == 'Linux'
+
       - name: download pre-built VTK static library (Windows)
         uses: suisei-cn/actions-download-file@v1.6.0
         with:

From 4b7a9f0a5812b9176e6aa85c096031dfe8d9e3bd Mon Sep 17 00:00:00 2001
From: Jose Luis Cercos-Pita <jlcercos@gmail.com>
Date: Fri, 23 Aug 2024 06:23:21 +0200
Subject: [PATCH 20/20] Update the changelog

---
 CHANGELOG.md | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 11b92da1..2cdd5889 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,3 +1,23 @@
+## [](https://github.com/core-marine-dev/MoorDyn/compare/v2.3.6...v) (2024-08-23)
+
+### Bug Fixes
+
+* **ci:** Ignore MUSLLinux wheels when testing ([63698bd](https://github.com/core-marine-dev/MoorDyn/commit/63698bd87f4224c8d062f4b3b732b2f52e5dbeef))
+* **ci:** List of dependencies to publish a package ([2c9ea79](https://github.com/core-marine-dev/MoorDyn/commit/2c9ea79d89002287bc0e718dcd433b9c891a3b92))
+* **ci:** Remove the MUSLLinux wheels before testing ([20a35bf](https://github.com/core-marine-dev/MoorDyn/commit/20a35bf0ad51f4500b84b03e266848f503665720))
+* **ci:** Removed unused env variables ([584bda5](https://github.com/core-marine-dev/MoorDyn/commit/584bda5581864d779d467875ee2b1a459cab8b91))
+* **ci:** Setting the VTK version ([3be2478](https://github.com/core-marine-dev/MoorDyn/commit/3be24786c21753f8aaba898ee4bdf551ca3196af))
+* **ci:** The VTK tar.gz can be directly extracted on MacOS ([9422fb2](https://github.com/core-marine-dev/MoorDyn/commit/9422fb21063254dc3e943f5a8b0399341aed491b))
+* **ci:** Update to VTK-9.3.1 ([154ab66](https://github.com/core-marine-dev/MoorDyn/commit/154ab66d5d7442ad15fd31a855577a848f91f5a9))
+* **ci:** Use directly the VTK version placeholders ([e528054](https://github.com/core-marine-dev/MoorDyn/commit/e5280542245ae5e7617aafb011c0f0f7a85cf7f9))
+* **ci:** Wrong VTK URI ([6ef95f9](https://github.com/core-marine-dev/MoorDyn/commit/6ef95f92ab826f8f4e09661728a54f7d6cb3d870))
+* **python-wheels:** Test the wheels ([f534b48](https://github.com/core-marine-dev/MoorDyn/commit/f534b48bd9eb508b00e6ff102e62a7d84addea0a))
+* **python:** Avoid using brew on MacOS-13 statically linking VTK ([a521444](https://github.com/core-marine-dev/MoorDyn/commit/a521444281e9117c09135640f49154c2d3d0a18a))
+* **python:** Enable MUSLLinux builds ([7f20dab](https://github.com/core-marine-dev/MoorDyn/commit/7f20dab357b8863320d35bee1723f21099900023))
+* **python:** Enable pypy builds again ([224f8e4](https://github.com/core-marine-dev/MoorDyn/commit/224f8e4f31271a96b6a4ef170d8337d252305cb7))
+* **python:** Set the install name id on MacOS ([32a9fca](https://github.com/core-marine-dev/MoorDyn/commit/32a9fcae8a8aee0558c632fe236f92d9e6bfda8d))
+* **python:** Set the MACOSX_DEPLOYMENT_TARGET to 10.15 ([f44e9c4](https://github.com/core-marine-dev/MoorDyn/commit/f44e9c4df1c1c9645d1a08255f16722baa519188))
+* **python:** Use the MUSLLinux VTK compilation when needed ([e5fe619](https://github.com/core-marine-dev/MoorDyn/commit/e5fe6190d5fdc67f6bb48c3fc7133a6ed5c5a4ec))
 ## [](https://github.com/core-marine-dev/MoorDyn/compare/v2.3.5...v) (2024-08-14)
 
 ### Bug Fixes