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@Manual{R-babynames,
title = {babynames: US Baby Names 1880-2017},
author = {Hadley Wickham},
year = {2021},
note = {R package version 1.0.1},
url = {https://github.com/hadley/babynames},
}
@Manual{R-base,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2022},
url = {https://www.R-project.org/},
}
@Manual{R-blastula,
title = {blastula: Easily Send HTML Email Messages},
author = {Richard Iannone and Joe Cheng},
year = {2020},
note = {R package version 0.3.2},
url = {https://github.com/rich-iannone/blastula},
}
@Manual{R-blogdown,
title = {blogdown: Create Blogs and Websites with R Markdown},
author = {Yihui Xie and Christophe Dervieux and Alison {Presmanes Hill}},
year = {2022},
note = {R package version 1.16},
url = {https://CRAN.R-project.org/package=blogdown},
}
@Manual{R-bookdown,
title = {bookdown: Authoring Books and Technical Documents with R Markdown},
author = {Yihui Xie},
year = {2022},
note = {R package version 0.26},
url = {https://CRAN.R-project.org/package=bookdown},
}
@Manual{R-broom,
title = {broom: Convert Statistical Objects into Tidy Tibbles},
author = {David Robinson and Alex Hayes and Simon Couch},
year = {2022},
note = {R package version 1.0.2},
url = {https://CRAN.R-project.org/package=broom},
}
@Manual{R-bslib,
title = {bslib: Custom Bootstrap 'Sass' Themes for shiny and rmarkdown},
author = {Carson Sievert and Joe Cheng},
year = {2021},
note = {R package version 0.3.1},
url = {https://CRAN.R-project.org/package=bslib},
}
@Manual{R-condformat,
title = {condformat: Conditional Formatting in Data Frames},
author = {Sergio {Oller Moreno}},
year = {2022},
note = {R package version 0.10.0},
url = {https://CRAN.R-project.org/package=condformat},
}
@Manual{R-diagram,
title = {diagram: Functions for Visualising Simple Graphs (Networks), Plotting
Flow Diagrams},
author = {Karline Soetaert},
year = {2020},
note = {R package version 1.6.5},
url = {https://CRAN.R-project.org/package=diagram},
}
@Manual{R-DiagrammeR,
title = {DiagrammeR: Graph/Network Visualization},
author = {Richard Iannone},
year = {2022},
note = {R package version 1.0.9},
url = {https://github.com/rich-iannone/DiagrammeR},
}
@Manual{R-distill,
title = {distill: R Markdown Format for Scientific and Technical Writing},
author = {JJ Allaire and Rich Iannone and Alison {Presmanes Hill} and Yihui Xie},
year = {2021},
note = {R package version 1.3},
url = {https://CRAN.R-project.org/package=distill},
}
@Manual{R-DT,
title = {DT: A Wrapper of the JavaScript Library DataTables},
author = {Yihui Xie and Joe Cheng and Xianying Tan},
year = {2022},
note = {R package version 0.26},
url = {https://github.com/rstudio/DT},
}
@Manual{R-dygraphs,
title = {dygraphs: Interface to Dygraphs Interactive Time Series Charting Library},
author = {Dan Vanderkam and JJ Allaire and Jonathan Owen and Daniel Gromer and Benoit Thieurmel},
year = {2018},
note = {R package version 1.1.1.6},
url = {https://github.com/rstudio/dygraphs},
}
@Manual{R-ezknitr,
title = {ezknitr: Avoid the Typical Working Directory Pain When Using knitr},
author = {Dean Attali},
year = {2016},
note = {R package version 0.6},
url = {https://github.com/ropenscilabs/ezknitr},
}
@Manual{R-flexdashboard,
title = {flexdashboard: R Markdown Format for Flexible Dashboards},
author = {Richard Iannone and JJ Allaire and Barbara Borges},
year = {2020},
note = {R package version 0.5.2},
url = {http://rmarkdown.rstudio.com/flexdashboard},
}
@Manual{R-flextable,
title = {flextable: Functions for Tabular Reporting},
author = {David Gohel and Panagiotis Skintzos},
year = {2022},
note = {R package version 0.8.3},
url = {https://CRAN.R-project.org/package=flextable},
}
@Manual{R-formatR,
title = {formatR: Format R Code Automatically},
author = {Yihui Xie},
year = {2022},
note = {R package version 1.12},
url = {https://github.com/yihui/formatR},
}
@Manual{R-formattable,
title = {formattable: Create Formattable Data Structures},
author = {Kun Ren and Kenton Russell},
year = {2021},
note = {R package version 0.2.1},
url = {https://CRAN.R-project.org/package=formattable},
}
@Manual{R-fusen,
title = {fusen: Build a Package from Rmarkdown Files},
author = {Sebastien Rochette},
year = {2022},
note = {R package version 0.4.1},
url = {https://CRAN.R-project.org/package=fusen},
}
@Manual{R-ggplot2,
title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
year = {2021},
note = {R package version 3.3.5},
url = {https://CRAN.R-project.org/package=ggplot2},
}
@Manual{R-googledrive,
title = {googledrive: An Interface to Google Drive},
author = {Lucy {D'Agostino McGowan} and Jennifer Bryan},
year = {2021},
note = {R package version 2.0.0},
url = {https://CRAN.R-project.org/package=googledrive},
}
@Manual{R-gt,
title = {gt: Easily Create Presentation-Ready Display Tables},
author = {Richard Iannone and Joe Cheng and Barret Schloerke and Ellis Hughes and JooYoung Seo},
year = {2022},
note = {R package version 0.8.0},
url = {https://CRAN.R-project.org/package=gt},
}
@Manual{R-gtsummary,
title = {gtsummary: Presentation-Ready Data Summary and Analytic Result Tables},
author = {Daniel D. Sjoberg and Joseph Larmarange and Michael Curry and Jessica Lavery and Karissa Whiting and Emily C. Zabor},
year = {2022},
note = {R package version 1.6.3},
url = {https://CRAN.R-project.org/package=gtsummary},
}
@Manual{R-here,
title = {here: A Simpler Way to Find Your Files},
author = {Kirill Müller},
year = {2020},
note = {R package version 1.0.1},
url = {https://CRAN.R-project.org/package=here},
}
@Manual{R-htmlwidgets,
title = {htmlwidgets: HTML Widgets for R},
author = {Ramnath Vaidyanathan and Yihui Xie and JJ Allaire and Joe Cheng and Carson Sievert and Kenton Russell},
year = {2021},
note = {R package version 1.5.4},
url = {https://github.com/ramnathv/htmlwidgets},
}
@Manual{R-huxtable,
title = {huxtable: Easily Create and Style Tables for LaTeX, HTML and Other Formats},
author = {David Hugh-Jones},
year = {2021},
note = {R package version 5.4.0},
url = {https://hughjonesd.github.io/huxtable/},
}
@Manual{R-kableExtra,
title = {kableExtra: Construct Complex Table with kable and Pipe Syntax},
author = {Hao Zhu},
year = {2021},
note = {R package version 1.3.4},
url = {https://CRAN.R-project.org/package=kableExtra},
}
@Manual{R-knitr,
title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
author = {Yihui Xie},
year = {2022},
note = {R package version 1.39},
url = {https://yihui.org/knitr/},
}
@Manual{R-leaflet,
title = {leaflet: Create Interactive Web Maps with the JavaScript Leaflet
Library},
author = {Joe Cheng and Bhaskar Karambelkar and Yihui Xie},
year = {2022},
note = {R package version 2.1.1},
url = {https://rstudio.github.io/leaflet/},
}
@Manual{R-learnr,
title = {learnr: Interactive Tutorials for R},
author = {Garrick Aden-Buie and Barret Schloerke and JJ Allaire},
year = {2022},
note = {R package version 0.11.2},
url = {https://CRAN.R-project.org/package=learnr},
}
@Manual{R-magick,
title = {magick: Advanced Graphics and Image-Processing in R},
author = {Jeroen Ooms},
year = {2021},
note = {R package version 2.7.3},
url = {https://CRAN.R-project.org/package=magick},
}
@Manual{R-officedown,
title = {officedown: Enhanced R Markdown Format for Word and PowerPoint},
author = {David Gohel and Noam Ross},
year = {2022},
note = {R package version 0.2.4},
url = {https://CRAN.R-project.org/package=officedown},
}
@Manual{R-officer,
title = {officer: Manipulation of Microsoft Word and PowerPoint Documents},
author = {David Gohel},
year = {2022},
note = {R package version 0.4.4},
url = {https://CRAN.R-project.org/package=officer},
}
@Manual{R-pagedown,
title = {pagedown: Paginate the HTML Output of R Markdown with CSS for Print},
author = {Yihui Xie and Romain Lesur and Brent Thorne and Xianying Tan},
year = {2022},
note = {R package version 0.20},
url = {https://github.com/rstudio/pagedown},
}
@Manual{R-pander,
title = {pander: An R Pandoc Writer},
author = {Gergely Daróczi and Roman Tsegelskyi},
year = {2022},
note = {R package version 0.6.5},
url = {https://rapporter.github.io/pander/},
}
@Manual{R-pixiedust,
title = {pixiedust: Tables so Beautifully Fine-Tuned You Will Believe It's Magic},
author = {Benjamin Nutter},
year = {2021},
note = {R package version 0.9.1},
url = {https://github.com/nutterb/pixiedust},
}
@Manual{R-prettydoc,
title = {prettydoc: Creating Pretty Documents from R Markdown},
author = {Yixuan Qiu},
year = {2021},
note = {R package version 0.4.1},
url = {https://github.com/yixuan/prettydoc},
}
@Manual{R-printr,
title = {printr: Automatically Print R Objects to Appropriate Formats According
to the knitr Output Format},
author = {Yihui Xie},
year = {2021},
note = {R package version 0.2},
url = {https://yihui.org/printr/},
}
@Manual{R-r2d3,
title = {r2d3: Interface to D3 Visualizations},
author = {Nick Strayer and Javier Luraschi and JJ Allaire},
year = {2022},
note = {R package version 0.2.6},
url = {https://CRAN.R-project.org/package=r2d3},
}
@Manual{R-reactable,
title = {reactable: Interactive Data Tables for R},
author = {Greg Lin},
year = {2022},
note = {R package version 0.4.1},
url = {https://CRAN.R-project.org/package=reactable},
}
@Manual{R-reticulate,
title = {reticulate: Interface to Python},
author = {Kevin Ushey and JJ Allaire and Yuan Tang},
year = {2022},
note = {R package version 1.24},
url = {https://CRAN.R-project.org/package=reticulate},
}
@Manual{R-rhandsontable,
title = {rhandsontable: Interface to the Handsontable.js Library},
author = {Jonathan Owen},
year = {2021},
note = {R package version 0.3.8},
url = {http://jrowen.github.io/rhandsontable/},
}
@Manual{R-rmarkdown,
title = {rmarkdown: Dynamic Documents for R},
author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
year = {2022},
note = {R package version 2.14},
url = {https://CRAN.R-project.org/package=rmarkdown},
}
@Manual{R-rmdformats,
title = {rmdformats: HTML Output Formats and Templates for rmarkdown Documents},
author = {Julien Barnier},
year = {2022},
note = {R package version 1.0.4},
url = {https://github.com/juba/rmdformats},
}
@Manual{R-roxygen2,
title = {roxygen2: In-Line Documentation for R},
author = {Hadley Wickham and Peter Danenberg and Gábor Csárdi and Manuel Eugster},
year = {2022},
note = {R package version 7.2.3},
url = {https://CRAN.R-project.org/package=roxygen2},
}
@Manual{R-rticles,
title = {rticles: Article Formats for R Markdown},
author = {JJ Allaire and Yihui Xie and Christophe Dervieux and {R Foundation} and Hadley Wickham and {Journal of Statistical Software} and Ramnath Vaidyanathan and {Association for Computing Machinery} and Carl Boettiger and {Elsevier} and Karl Broman and Kirill Mueller and Bastiaan Quast and Randall Pruim and Ben Marwick and Charlotte Wickham and Oliver Keyes and Miao Yu and Daniel Emaasit and Thierry Onkelinx and Alessandro Gasparini and Marc-Andre Desautels and Dominik Leutnant and {MDPI} and {Taylor and Francis} and Oğuzhan Öğreden and Dalton Hance and Daniel Nüst and Petter Uvesten and Elio Campitelli and John Muschelli and Alex Hayes and Zhian N. Kamvar and Noam Ross and Robrecht Cannoodt and Duncan Luguern and David M. Kaplan and Sebastian Kreutzer and Shixiang Wang and Jay Hesselberth and Rob Hyndman},
year = {2022},
note = {R package version 0.23},
url = {https://github.com/rstudio/rticles},
}
@Manual{R-sass,
title = {sass: Syntactically Awesome Style Sheets (Sass)},
author = {Joe Cheng and Timothy Mastny and Richard Iannone and Barret Schloerke and Carson Sievert},
year = {2022},
note = {R package version 0.4.1},
url = {https://CRAN.R-project.org/package=sass},
}
@Manual{R-shiny,
title = {shiny: Web Application Framework for R},
author = {Winston Chang and Joe Cheng and JJ Allaire and Carson Sievert and Barret Schloerke and Yihui Xie and Jeff Allen and Jonathan McPherson and Alan Dipert and Barbara Borges},
year = {2021},
note = {R package version 1.7.1},
url = {https://shiny.rstudio.com/},
}
@Manual{R-showtext,
title = {showtext: Using Fonts More Easily in R Graphs},
author = {Yixuan Qiu and authors/contributors of the included software. See file AUTHORS for details.},
year = {2022},
note = {R package version 0.9-5},
url = {https://github.com/yixuan/showtext},
}
@Manual{R-spelling,
title = {spelling: Tools for Spell Checking in R},
author = {Jeroen Ooms and Jim Hester},
year = {2020},
note = {R package version 2.2},
url = {https://CRAN.R-project.org/package=spelling},
}
@Manual{R-stargazer,
title = {stargazer: Well-Formatted Regression and Summary Statistics Tables},
author = {Marek Hlavac},
year = {2022},
note = {R package version 5.2.3},
url = {https://CRAN.R-project.org/package=stargazer},
}
@Manual{R-styler,
title = {styler: Non-Invasive Pretty Printing of R Code},
author = {Kirill Müller and Lorenz Walthert},
year = {2022},
note = {R package version 1.8.1},
url = {https://CRAN.R-project.org/package=styler},
}
@Manual{R-svglite,
title = {svglite: An SVG Graphics Device},
author = {Hadley Wickham and Lionel Henry and Thomas Lin Pedersen and T Jake Luciani and Matthieu Decorde and Vaudor Lise},
year = {2022},
note = {R package version 2.1.0},
url = {https://CRAN.R-project.org/package=svglite},
}
@Manual{R-tables,
title = {tables: Formula-Driven Table Generation},
author = {Duncan Murdoch},
year = {2022},
note = {R package version 0.9.10},
url = {https://r-forge.r-project.org/projects/tables/},
}
@Manual{R-testthat,
title = {testthat: Unit Testing for R},
author = {Hadley Wickham},
year = {2022},
note = {R package version 3.1.6},
url = {https://CRAN.R-project.org/package=testthat},
}
@Manual{R-tikzDevice,
title = {tikzDevice: R Graphics Output in LaTeX Format},
author = {Charlie Sharpsteen and Cameron Bracken},
year = {2020},
note = {R package version 0.12.3.1},
url = {https://github.com/daqana/tikzDevice},
}
@Manual{R-tinytex,
title = {tinytex: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents},
author = {Yihui Xie},
year = {2022},
note = {R package version 0.43},
url = {https://github.com/rstudio/tinytex},
}
@Manual{R-usethis,
title = {usethis: Automate Package and Project Setup},
author = {Hadley Wickham and Jennifer Bryan and Malcolm Barrett},
year = {2022},
note = {R package version 2.1.6},
url = {https://CRAN.R-project.org/package=usethis},
}
@Manual{R-webshot,
title = {webshot: Take Screenshots of Web Pages},
author = {Winston Chang},
year = {2022},
note = {R package version 0.5.3},
url = {https://CRAN.R-project.org/package=webshot},
}
@Manual{R-workflowr,
title = {workflowr: A Framework for Reproducible and Collaborative Data Science},
author = {John Blischak and Peter Carbonetto and Matthew Stephens},
year = {2021},
note = {R package version 1.7.0},
url = {https://github.com/workflowr/workflowr},
}
@Manual{R-xaringan,
title = {xaringan: Presentation Ninja},
author = {Yihui Xie},
year = {2022},
note = {R package version 0.24},
url = {https://github.com/yihui/xaringan},
}
@Manual{R-xaringanExtra,
title = {xaringanExtra: Extras and Extensions for xaringan Slides},
author = {Garrick Aden-Buie and Matthew T. Warkentin},
year = {2022},
note = {R package version 0.7.0},
url = {https://CRAN.R-project.org/package=xaringanExtra},
}
@Manual{R-xaringanthemer,
title = {xaringanthemer: Custom xaringan CSS Themes},
author = {Garrick Aden-Buie},
year = {2022},
note = {R package version 0.4.2},
url = {https://CRAN.R-project.org/package=xaringanthemer},
}
@Manual{R-xfun,
title = {xfun: Supporting Functions for Packages Maintained by Yihui Xie},
author = {Yihui Xie},
year = {2022},
note = {R package version 0.35},
url = {https://github.com/yihui/xfun},
}
@Manual{R-xtable,
title = {xtable: Export Tables to LaTeX or HTML},
author = {David B. Dahl and David Scott and Charles Roosen and Arni Magnusson and Jonathan Swinton},
year = {2019},
note = {R package version 1.8-4},
url = {http://xtable.r-forge.r-project.org/},
}
@Manual{R-yaml,
title = {yaml: Methods to Convert R Data to YAML and Back},
author = {Shawn P Garbett and Jeremy Stephens and Kirill Simonov and Yihui Xie and Zhuoer Dong and Hadley Wickham and Jeffrey Horner and {reikoch} and Will Beasley and Brendan O'Connor and Gregory R. Warnes and Michael Quinn and Zhian N. Kamvar},
year = {2022},
note = {R package version 2.3.5},
url = {https://github.com/vubiostat/r-yaml/},
}
@Manual{R-ztable,
title = {ztable: Zebra-Striped Tables in LaTeX and HTML Formats},
author = {Keon-Woong Moon},
year = {2021},
note = {R package version 0.2.3},
url = {https://github.com/cardiomoon/ztable},
}
@Book{blogdown2017,
title = {blogdown: Creating Websites with {R} Markdown},
author = {Yihui Xie and Alison Presmanes Hill and Amber Thomas},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2017},
note = {ISBN 978-0815363729},
url = {https://bookdown.org/yihui/blogdown/},
}
@Book{bookdown2016,
title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
author = {Yihui Xie},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2016},
note = {ISBN 978-1138700109},
url = {https://bookdown.org/yihui/bookdown},
}
@Book{ggplot22016,
author = {Hadley Wickham},
title = {ggplot2: Elegant Graphics for Data Analysis},
publisher = {Springer-Verlag New York},
year = {2016},
isbn = {978-3-319-24277-4},
url = {https://ggplot2.tidyverse.org},
}
@Article{gtsummary,
author = {Daniel D. Sjoberg and Karissa Whiting and Michael Curry and Jessica A. Lavery and Joseph Larmarange},
title = {Reproducible Summary Tables with the gtsummary Package},
journal = {{The R Journal}},
year = {2021},
url = {https://doi.org/10.32614/RJ-2021-053},
doi = {10.32614/RJ-2021-053},
volume = {13},
issue = {1},
pages = {570-580},
}
@Book{knitr2015,
title = {Dynamic Documents with {R} and knitr},
author = {Yihui Xie},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2015},
edition = {2nd},
note = {ISBN 978-1498716963},
url = {https://yihui.org/knitr/},
}
@InCollection{knitr2014,
booktitle = {Implementing Reproducible Computational Research},
editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
author = {Yihui Xie},
publisher = {Chapman and Hall/CRC},
year = {2014},
note = {ISBN 978-1466561595},
url = {http://www.crcpress.com/product/isbn/9781466561595},
}
@Book{rmarkdown2018,
title = {R Markdown: The Definitive Guide},
author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2018},
note = {ISBN 9781138359338},
url = {https://bookdown.org/yihui/rmarkdown},
}
@Book{rmarkdown2020,
title = {R Markdown Cookbook},
author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2020},
note = {ISBN 9780367563837},
url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}
@Article{testthat2011,
author = {Hadley Wickham},
title = {testthat: Get Started with Testing},
journal = {The R Journal},
year = {2011},
volume = {3},
pages = {5--10},
url = {https://journal.r-project.org/archive/2011-1/RJournal_2011-1_Wickham.pdf},
}
@Article{tinytex2019,
title = {TinyTeX: A lightweight, cross-platform, and easy-to-maintain LaTeX distribution based on TeX Live},
author = {Yihui Xie},
journal = {TUGboat},
year = {2019},
volume = {40},
number = {1},
pages = {30--32},
url = {https://tug.org/TUGboat/Contents/contents40-1.html},
}
@Article{workflowr2019,
title = {Creating and sharing reproducible research code the workflowr way [version 1; peer review: 3 approved]},
author = {John D Blischak and Peter Carbonetto and Matthew Stephens},
journal = {F1000Research},
year = {2019},
volume = {8},
number = {1749},
doi = {10.12688/f1000research.20843.1},
url = {https://doi.org/10.12688/f1000research.20843.1},
}