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1084.71 4.06709 0.268838 +ENSMMUT00000080642.1 171 39.4627 6.29807 11.4431 +ENSMMUT00000096316.1 109 14.6196 232.852 1142 +ENSMMUT00000061504.2 183 45.3963 0 0 +ENSMMUT00000053839.2 669 484.778 136.275 20.1555 +ENSMMUT00000086586.1 1013 828.712 0 0 +ENSMMUT00000098013.1 174 41.0693 0 0 +ENSMMUT00000093846.1 767 582.752 3 0.369113 +ENSMMUT00000096279.1 190 49.1353 0 0 +ENSMMUT00000094710.1 121 18.555 2.5911 10.0126 +ENSMMUT00000100112.1 263 97.7119 0 0 +ENSMMUT00000088861.1 1350 1165.71 62.4958 3.84398 +ENSMMUT00000023469.4 342 164.653 0 0 +ENSMMUT00000107700.1 264 98.5341 0 0 +ENSMMUT00000098877.1 954 769.752 5 0.465737 +ENSMMUT00000040282.3 672 487.778 0 0 +ENSMMUT00000013499.4 2238 2053.71 0 0 +ENSMMUT00000083749.1 321 145.984 0 0 +ENSMMUT00000091473.1 99 12.7495 0 0 +ENSMMUT00000044602.3 573 388.965 21.7545 4.01014 +ENSMMUT00000098350.1 143 26.698 37.8857 101.746 +ENSMMUT00000084326.1 794 609.752 0 0 +ENSMMUT00000026332.4 336 159.354 2.49738 1.12368 +ENSMMUT00000070869.2 1059 874.712 1.00033 0.0819971 +ENSMMUT00000072330.2 480 296.681 0 0 +ENSMMUT00000096129.1 165 36.4741 44.4182 87.3167 +ENSMMUT00000006008.4 213 62.7292 6.00898 6.86836 +ENSMMUT00000082317.1 175 41.4951 131.039 226.425 +ENSMMUT00000081998.1 139 24.9505 2 5.74741 +ENSMMUT00000105340.1 142 26.2204 63 172.275 +ENSMMUT00000109486.1 107 14.3869 21.3925 106.614 +ENSMMUT00000082239.1 1098 913.712 5.67336 0.445197 +ENSMMUT00000023224.4 537 353.095 1.35326 0.274797 +ENSMMUT00000089131.1 1438 1253.71 0 0 +ENSMMUT00000087359.1 136 23.7865 0 0 +ENSMMUT00000105797.1 1503 1318.71 38.6245 2.10008 +ENSMMUT00000107993.1 131 21.824 0 0 +ENSMMUT00000084999.1 92 11.5103 0 0 +ENSMMUT00000087528.1 81 10.8723 0 0 +ENSMMUT00000041146.3 525 341.164 0 0 +ENSMMUT00000046138.3 369 189.506 0 0 +ENSMMUT00000025155.4 993 808.752 1.03774 0.0920012 +ENSMMUT00000103302.1 186 46.9938 6 9.15444 +ENSMMUT00000083769.1 416 234.188 2 0.612331 +ENSMMUT00000089916.1 115 16.7331 1 4.28493 +ENSMMUT00000055015.2 384 203.599 0 0 +ENSMMUT00000102161.1 165 36.4741 12.7581 25.0797 +ENSMMUT00000071254.2 225 70.5338 0 0 +ENSMMUT00000067664.2 1251 1066.71 5.94776 0.399787 +ENSMMUT00000083401.1 1104 919.712 6.53353 0.509352 +ENSMMUT00000023663.4 387 206.505 0 0 +ENSMMUT00000084931.1 140 25.3628 349.088 986.868 +ENSMMUT00000103013.1 704 519.752 33.2224 4.58307 +ENSMMUT00000015971.3 411 229.34 0 0 +ENSMMUT00000087189.1 2103 1918.71 0 0 +ENSMMUT00000058107.2 550 366.041 176.096 34.4939 +ENSMMUT00000019761.4 1119 934.712 1.00774 0.0773019 +ENSMMUT00000024558.3 678 493.778 0 0 +ENSMMUT00000084743.1 119 17.8893 1.15154 4.61539 +ENSMMUT00000107771.1 169 38.4191 0 0 +ENSMMUT00000029718.4 402 220.804 268.165 87.0794 +ENSMMUT00000102785.1 132 22.2328 0 0 +ENSMMUT00000074599.2 462 278.941 22.4647 5.77444 +ENSMMUT00000070858.2 327 151.281 14.4652 6.85584 +ENSMMUT00000101898.1 312 138.001 0 0 +ENSMMUT00000085100.1 625 440.778 4.13262 0.672245 +ENSMMUT00000088563.1 109 14.6196 0 0 +ENSMMUT00000080979.1 454 271.051 49.8354 13.1829 +ENSMMUT00000098533.1 252 89.2745 44.28 35.5633 +ENSMMUT00000086129.1 480 296.681 2 0.483349 +ENSMMUT00000092709.1 248 86.3657 0 0 +ENSMMUT00000015678.4 582 397.946 0 0 +ENSMMUT00000094900.1 936 751.752 23.1872 2.21154 +ENSMMUT00000054231.2 1193 1008.71 0 0 +ENSMMUT00000064571.2 231 74.7054 0 0 +ENSMMUT00000079648.1 195 51.9786 0 0 +ENSMMUT00000094335.1 141 25.7792 2 5.56267 +ENSMMUT00000096734.1 240 80.7507 0 0 +ENSMMUT00000109367.1 1122 937.712 0 0 +ENSMMUT00000072045.2 162 34.986 4 8.1976 +ENSMMUT00000075531.2 243 82.779 0 0 +ENSMMUT00000087839.1 156 32.2917 49.9023 110.803 +ENSMMUT00000097034.1 182 44.8434 3 4.79672 +ENSMMUT00000053422.2 1101 916.712 7.09257 0.554744 +ENSMMUT00000091604.1 124 19.4403 2.30693 8.50847 +ENSMMUT00000041655.3 1089 904.712 0 0 +ENSMMUT00000091233.1 134 23.0207 30.5998 95.3062 +ENSMMUT00000093758.1 86 10.8298 0 0 diff --git a/quant/M1-Ach-EnthMB_S11/abundance.tsv.log b/quant/M1-Ach-EnthMB_S11/abundance.tsv.log new file mode 100644 index 0000000..86fd8f5 --- /dev/null +++ b/quant/M1-Ach-EnthMB_S11/abundance.tsv.log @@ -0,0 +1,16 @@ + +[quant] fragment length distribution will be estimated from the data +[index] k-mer length: 31 +[index] number of targets: 49,537 +[index] number of k-mers: 65,003,617 +[index] number of equivalence classes: 207,940 +[quant] running in paired-end mode +[quant] will process pair 1: M1-Ach-EnthMB_S11.fastq.1.gz + M1-Ach-EnthMB_S11.fastq.2.gz +[quant] finding pseudoalignments for the reads ... done +[quant] processed 27,304,372 reads, 18,344,302 reads pseudoaligned +[quant] estimated average fragment length: 185.288 +[ em] quantifying the abundances ... done +[ em] the Expectation-Maximization algorithm ran for 1,190 rounds +[bstrp] number of EM bootstraps complete: 1 [bstrp] number of EM bootstraps complete: 2 [bstrp] number of EM bootstraps complete: 3 [bstrp] number of EM bootstraps complete: 4 [bstrp] number of EM bootstraps complete: 5 [bstrp] number of EM bootstraps complete: 6 [bstrp] number of EM bootstraps complete: 7 [bstrp] number of EM bootstraps complete: 8 [bstrp] number of EM bootstraps complete: 9 [bstrp] number of EM bootstraps complete: 10 [bstrp] number of EM bootstraps complete: 11 [bstrp] number of EM bootstraps complete: 12 [bstrp] number of EM bootstraps complete: 13 [bstrp] number of EM bootstraps complete: 14 [bstrp] number of EM bootstraps complete: 15 [bstrp] number of EM bootstraps complete: 16 [bstrp] number of EM bootstraps complete: 17 [bstrp] number of EM bootstraps complete: 18 [bstrp] number of EM bootstraps complete: 19 [bstrp] number of EM bootstraps complete: 20 [bstrp] number of EM bootstraps complete: 21 [bstrp] number of EM bootstraps complete: 22 [bstrp] number of EM bootstraps complete: 23 [bstrp] number of EM bootstraps complete: 24 [bstrp] number of EM bootstraps complete: 25 [bstrp] number of EM bootstraps complete: 26 [bstrp] number of EM bootstraps complete: 27 [bstrp] number of EM bootstraps complete: 28 [bstrp] number of EM bootstraps complete: 29 [bstrp] number of EM bootstraps complete: 30 [bstrp] number of EM bootstraps complete: 31 [bstrp] number of EM bootstraps complete: 32 [bstrp] number of EM bootstraps complete: 33 [bstrp] number of EM bootstraps complete: 34 [bstrp] number of EM bootstraps complete: 35 [bstrp] number of EM bootstraps complete: 36 [bstrp] number of EM bootstraps complete: 37 [bstrp] number of EM bootstraps complete: 38 [bstrp] number of EM bootstraps complete: 39 [bstrp] number of EM bootstraps complete: 40 [bstrp] number of EM bootstraps complete: 41 [bstrp] number of EM bootstraps complete: 42 [bstrp] number of EM bootstraps complete: 43 [bstrp] number of EM bootstraps complete: 44 [bstrp] number of EM bootstraps complete: 45 [bstrp] number of EM bootstraps complete: 46 [bstrp] number of EM bootstraps complete: 47 [bstrp] number of EM bootstraps complete: 48 [bstrp] number of EM bootstraps complete: 49 [bstrp] number of EM bootstraps complete: 50 [bstrp] number of EM bootstraps complete: 51 [bstrp] number of EM bootstraps complete: 52 [bstrp] number of EM bootstraps complete: 53 [bstrp] number of EM bootstraps complete: 54 [bstrp] number of EM bootstraps complete: 55 [bstrp] number of EM bootstraps complete: 56 [bstrp] number of EM bootstraps complete: 57 [bstrp] number of EM bootstraps complete: 58 [bstrp] number of EM bootstraps complete: 59 [bstrp] number of EM bootstraps complete: 60 [bstrp] number of EM bootstraps complete: 61 [bstrp] number of EM bootstraps complete: 62 [bstrp] number of EM bootstraps complete: 63 [bstrp] number of EM bootstraps complete: 64 [bstrp] number of EM bootstraps complete: 65 [bstrp] number of EM bootstraps complete: 66 [bstrp] number of EM bootstraps complete: 67 [bstrp] number of EM bootstraps complete: 68 [bstrp] number of EM bootstraps complete: 69 [bstrp] number of EM bootstraps complete: 70 [bstrp] number of EM bootstraps complete: 71 [bstrp] number of EM bootstraps complete: 72 [bstrp] number of EM bootstraps complete: 73 [bstrp] number of EM bootstraps complete: 74 [bstrp] number of EM bootstraps complete: 75 [bstrp] number of EM bootstraps complete: 76 [bstrp] number of EM bootstraps complete: 77 [bstrp] number of EM bootstraps complete: 78 [bstrp] number of EM bootstraps complete: 79 [bstrp] number of EM bootstraps complete: 80 [bstrp] number of EM bootstraps complete: 81 [bstrp] number of EM bootstraps complete: 82 [bstrp] number of EM bootstraps complete: 83 [bstrp] number of EM bootstraps complete: 84 [bstrp] number of EM bootstraps complete: 85 [bstrp] number of EM bootstraps complete: 86 [bstrp] number of EM bootstraps complete: 87 [bstrp] number of EM bootstraps complete: 88 [bstrp] number of EM bootstraps complete: 89 [bstrp] number of EM bootstraps complete: 90 [bstrp] number of EM bootstraps complete: 91 [bstrp] number of EM bootstraps complete: 92 [bstrp] number of EM bootstraps complete: 93 [bstrp] number of EM bootstraps complete: 94 [bstrp] number of EM bootstraps complete: 95 [bstrp] number of EM bootstraps complete: 96 [bstrp] number of EM bootstraps complete: 97 [bstrp] number of EM bootstraps complete: 98 [bstrp] number of EM bootstraps complete: 99 [bstrp] number of EM bootstraps complete: 100 + diff --git a/quant/M1-Ach-EnthMB_S11/run_info.json b/quant/M1-Ach-EnthMB_S11/run_info.json new file mode 100644 index 0000000..76f1144 --- /dev/null +++ b/quant/M1-Ach-EnthMB_S11/run_info.json @@ -0,0 +1,13 @@ +{ + "n_targets": 49537, + "n_bootstraps": 100, + "n_processed": 27304372, + "n_pseudoaligned": 18344302, + "n_unique": 8895377, + "p_pseudoaligned": 67.2, + "p_unique": 32.6, + "kallisto_version": "0.46.2", + "index_version": 10, + "start_time": "Wed Jul 28 20:45:18 2021", + "call": "kallisto quant --rf-stranded -t 8 -b 100 -i kalindex/Macaca_mulatta.Mmul_10.cdna.all.idx -o quant/M1-Ach-EnthMB_S11 M1-Ach-EnthMB_S11.fastq.1.gz M1-Ach-EnthMB_S11.fastq.2.gz" +} diff --git a/quant/M1-Ach-Enth_S10/abundance.h5 b/quant/M1-Ach-Enth_S10/abundance.h5 new file mode 100644 index 0000000..a9ab5f3 Binary files /dev/null and b/quant/M1-Ach-Enth_S10/abundance.h5 differ diff --git a/quant/M1-Ach-Enth_S10/abundance.tsv b/quant/M1-Ach-Enth_S10/abundance.tsv new file mode 100644 index 0000000..03e6a60 --- /dev/null +++ b/quant/M1-Ach-Enth_S10/abundance.tsv @@ -0,0 +1,49538 @@ +target_id length eff_length est_counts tpm +ENSMMUT00000085913.1 378 194.065 0 0 +ENSMMUT00000096925.1 354 171.949 0 0 +ENSMMUT00000086702.1 354 171.949 1 0.525457 +ENSMMUT00000103209.1 372 188.473 0 0 +ENSMMUT00000091584.1 336 155.691 0 0 +ENSMMUT00000095663.1 336 155.691 0 0 +ENSMMUT00000095240.1 336 155.691 0 0 +ENSMMUT00000100853.1 252 86.9196 0 0 +ENSMMUT00000041640.3 348 166.489 0 0 +ENSMMUT00000104099.1 339 158.374 1 0.570498 +ENSMMUT00000079906.1 336 155.691 0 0 +ENSMMUT00000104266.1 267 98.154 0 0 +ENSMMUT00000100496.1 336 155.691 0 0 +ENSMMUT00000101173.1 336 155.691 0 0 +ENSMMUT00000101507.1 333 153.092 0 0 +ENSMMUT00000091100.1 336 155.691 0 0 +ENSMMUT00000091126.1 342 160.978 0 0 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0.502263 +ENSMMUT00000030445.4 1413 1224.39 54 3.98486 +ENSMMUT00000086432.1 1829 1640.39 9.12536 0.502622 +ENSMMUT00000095261.1 1958 1769.39 0 0 +ENSMMUT00000092319.1 2278 2089.39 9.44949 0.408627 +ENSMMUT00000088388.1 1990 1801.39 30.5268 1.53113 +ENSMMUT00000080531.1 1051 862.385 6.6628 0.69806 +ENSMMUT00000071608.2 912 723.424 9 1.12405 +ENSMMUT00000081142.1 1409 1220.39 35.7553 2.64716 +ENSMMUT00000091852.1 4426 4237.39 30.2259 0.644493 +ENSMMUT00000087980.1 1572 1383.39 177 11.5602 +ENSMMUT00000101750.1 1520 1331.39 14 0.950083 +ENSMMUT00000027644.3 2354 2165.39 355 14.8126 +ENSMMUT00000103604.1 1482 1293.39 53.584 3.74321 +ENSMMUT00000056798.2 555 366.663 22 5.42116 +ENSMMUT00000085829.1 5809 5620.39 153.349 2.4652 +ENSMMUT00000108780.1 1825 1636.39 43 2.37421 +ENSMMUT00000093365.1 3919 3730.39 8.29137 0.200821 +ENSMMUT00000074047.2 345 163.735 249 137.402 +ENSMMUT00000085502.1 2308 2119.39 17 0.72473 +ENSMMUT00000047231.3 462 274.631 0 0 +ENSMMUT00000070294.2 3768 3579.39 17.0972 0.431574 +ENSMMUT00000080535.1 2701 2512.39 23.7262 0.853255 +ENSMMUT00000088498.1 8098 7909.39 127.906 1.46111 +ENSMMUT00000101929.1 1717 1528.39 1 0.0591159 +ENSMMUT00000093756.1 1482 1293.39 0 0 +ENSMMUT00000080547.1 42234 42045.4 0 0 +ENSMMUT00000079146.2 1533 1344.39 877 58.9404 +ENSMMUT00000057233.2 22881 22692.4 1740 6.92797 +ENSMMUT00000007119.4 3414 3225.39 105 2.94134 +ENSMMUT00000098331.1 344 162.777 0 0 +ENSMMUT00000091168.1 874 685.424 0 0 +ENSMMUT00000088318.1 1880 1691.39 0 0 +ENSMMUT00000018477.4 4992 4803.39 437.399 8.22749 +ENSMMUT00000103867.1 1289 1100.39 30.002 2.46344 +ENSMMUT00000087362.1 2183 1994.39 10.3039 0.4668 +ENSMMUT00000001207.4 2268 2079.39 0 0 +ENSMMUT00000080714.1 1787 1598.39 16.0943 0.909763 +ENSMMUT00000091362.1 1050 861.385 0 0 +ENSMMUT00000106714.1 312 134.706 0 0 +ENSMMUT00000056774.2 957 768.424 8.96306 1.05388 +ENSMMUT00000017828.4 2236 2047.39 169 7.45803 +ENSMMUT00000088068.1 1584 1395.39 0 0 +ENSMMUT00000109699.1 1561 1372.39 7 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+ENSMMUT00000084326.1 794 605.424 1.43218 0.213735 +ENSMMUT00000026332.4 336 155.691 5.21279 3.02512 +ENSMMUT00000070869.2 1059 870.385 0 0 +ENSMMUT00000072330.2 480 292.275 0 0 +ENSMMUT00000096129.1 165 35.1996 17.7667 45.6042 +ENSMMUT00000006008.4 213 60.7706 0 0 +ENSMMUT00000082317.1 175 39.8695 54.3917 123.262 +ENSMMUT00000081998.1 139 24.2231 0 0 +ENSMMUT00000105340.1 142 25.4259 59 209.658 +ENSMMUT00000109486.1 107 13.5216 5.76345 38.5115 +ENSMMUT00000082239.1 1098 909.385 7.53121 0.748262 +ENSMMUT00000023224.4 537 348.735 0 0 +ENSMMUT00000089131.1 1438 1249.39 0 0 +ENSMMUT00000087359.1 136 23.0433 0 0 +ENSMMUT00000105797.1 1503 1314.39 20.4298 1.40436 +ENSMMUT00000107993.1 131 21.1381 0 0 +ENSMMUT00000084999.1 92 11.526 1.19413 9.36072 +ENSMMUT00000087528.1 81 11.2874 0 0 +ENSMMUT00000041146.3 525 336.838 0 0 +ENSMMUT00000046138.3 369 185.673 0 0 +ENSMMUT00000025155.4 993 804.385 0 0 +ENSMMUT00000103302.1 186 45.3411 7 13.949 +ENSMMUT00000083769.1 416 230.098 0 0 +ENSMMUT00000089916.1 115 15.6003 1 5.79169 +ENSMMUT00000055015.2 384 199.715 0 0 +ENSMMUT00000102161.1 165 35.1996 22.0826 56.6824 +ENSMMUT00000071254.2 225 68.1106 0 0 +ENSMMUT00000067664.2 1251 1062.39 1.89043 0.160774 +ENSMMUT00000083401.1 1104 915.385 2.37555 0.234475 +ENSMMUT00000023663.4 387 202.592 0 0 +ENSMMUT00000084931.1 140 24.5249 137.503 506.573 +ENSMMUT00000103013.1 704 515.424 7.06425 1.23833 +ENSMMUT00000015971.3 411 225.247 1.05763 0.42424 +ENSMMUT00000087189.1 2103 1914.39 0 0 +ENSMMUT00000058107.2 550 361.7 52.7163 13.1684 +ENSMMUT00000019761.4 1119 930.385 0 0 +ENSMMUT00000024558.3 678 489.424 0 0 +ENSMMUT00000084743.1 119 16.9423 1.35946 7.24987 +ENSMMUT00000107771.1 169 37.0769 0 0 +ENSMMUT00000029718.4 402 216.702 328.703 137.05 +ENSMMUT00000102785.1 132 21.5303 0 0 +ENSMMUT00000074599.2 462 274.631 14.5602 4.79021 +ENSMMUT00000070858.2 327 147.703 0 0 +ENSMMUT00000101898.1 312 134.706 0 0 +ENSMMUT00000085100.1 625 436.424 8.01064 1.65842 +ENSMMUT00000088563.1 109 13.9439 0 0 +ENSMMUT00000080979.1 454 266.808 44.6642 15.1251 +ENSMMUT00000098533.1 252 86.9196 15.9265 16.5554 +ENSMMUT00000086129.1 480 292.275 1.01134 0.312637 +ENSMMUT00000092709.1 248 83.8926 0 0 +ENSMMUT00000015678.4 582 393.55 0 0 +ENSMMUT00000094900.1 936 747.424 22.3496 2.70171 +ENSMMUT00000054231.2 1193 1004.39 3.08308 0.277346 +ENSMMUT00000064571.2 231 71.9829 0 0 +ENSMMUT00000079648.1 195 50.2597 0 0 +ENSMMUT00000094335.1 141 24.9097 4 14.5087 +ENSMMUT00000096734.1 240 78.1364 0 0 +ENSMMUT00000109367.1 1122 933.385 3.14851 0.304777 +ENSMMUT00000072045.2 162 33.8945 5 13.3284 +ENSMMUT00000075531.2 243 80.3495 1 1.12449 +ENSMMUT00000087839.1 156 31.3069 15.6922 45.2876 +ENSMMUT00000097034.1 182 43.3543 8.11882 16.9199 +ENSMMUT00000053422.2 1101 912.385 10.1155 1.00172 +ENSMMUT00000091604.1 124 18.7541 0 0 +ENSMMUT00000041655.3 1089 900.385 1 0.100348 +ENSMMUT00000091233.1 134 22.3362 31.2792 126.527 +ENSMMUT00000093758.1 86 11.1479 0 0 diff --git a/quant/M1-Ach-Enth_S10/abundance.tsv.log b/quant/M1-Ach-Enth_S10/abundance.tsv.log new file mode 100644 index 0000000..c5c1f66 --- /dev/null +++ b/quant/M1-Ach-Enth_S10/abundance.tsv.log @@ -0,0 +1,16 @@ + +[quant] fragment length distribution will be estimated from the data +[index] k-mer length: 31 +[index] number of targets: 49,537 +[index] number of k-mers: 65,003,617 +[index] number of equivalence classes: 207,940 +[quant] running in paired-end mode +[quant] will process pair 1: M1-Ach-Enth_S10.fastq.1.gz + M1-Ach-Enth_S10.fastq.2.gz +[quant] finding pseudoalignments for the reads ... done +[quant] processed 23,867,755 reads, 16,718,762 reads pseudoaligned +[quant] estimated average fragment length: 189.615 +[ em] quantifying the abundances ... done +[ em] the Expectation-Maximization algorithm ran for 1,180 rounds +[bstrp] number of EM bootstraps complete: 1 [bstrp] number of EM bootstraps complete: 2 [bstrp] number of EM bootstraps complete: 3 [bstrp] number of EM bootstraps complete: 4 [bstrp] number of EM bootstraps complete: 5 [bstrp] number of EM bootstraps complete: 6 [bstrp] number of EM bootstraps complete: 7 [bstrp] number of EM bootstraps complete: 8 [bstrp] number of EM bootstraps complete: 9 [bstrp] number of EM bootstraps complete: 10 [bstrp] number of EM bootstraps complete: 11 [bstrp] number of EM bootstraps complete: 12 [bstrp] number of EM bootstraps complete: 13 [bstrp] number of EM bootstraps complete: 14 [bstrp] number of EM bootstraps complete: 15 [bstrp] number of EM bootstraps complete: 16 [bstrp] number of EM bootstraps complete: 17 [bstrp] number of EM bootstraps complete: 18 [bstrp] number of EM bootstraps complete: 19 [bstrp] number of EM bootstraps complete: 20 [bstrp] number of EM bootstraps complete: 21 [bstrp] number of EM bootstraps complete: 22 [bstrp] number of EM bootstraps complete: 23 [bstrp] number of EM bootstraps complete: 24 [bstrp] number of EM bootstraps complete: 25 [bstrp] number of EM bootstraps complete: 26 [bstrp] number of EM bootstraps complete: 27 [bstrp] number of EM bootstraps complete: 28 [bstrp] number of EM bootstraps complete: 29 [bstrp] number of EM bootstraps complete: 30 [bstrp] number of EM bootstraps complete: 31 [bstrp] number of EM bootstraps complete: 32 [bstrp] number of EM bootstraps complete: 33 [bstrp] number of EM bootstraps complete: 34 [bstrp] number of EM bootstraps complete: 35 [bstrp] number of EM bootstraps complete: 36 [bstrp] number of EM bootstraps complete: 37 [bstrp] number of EM bootstraps complete: 38 [bstrp] number of EM bootstraps complete: 39 [bstrp] number of EM bootstraps complete: 40 [bstrp] number of EM bootstraps complete: 41 [bstrp] number of EM bootstraps complete: 42 [bstrp] number of EM bootstraps complete: 43 [bstrp] number of EM bootstraps complete: 44 [bstrp] number of EM bootstraps complete: 45 [bstrp] number of EM bootstraps complete: 46 [bstrp] number of EM bootstraps complete: 47 [bstrp] number of EM bootstraps complete: 48 [bstrp] number of EM bootstraps complete: 49 [bstrp] number of EM bootstraps complete: 50 [bstrp] number of EM bootstraps complete: 51 [bstrp] number of EM bootstraps complete: 52 [bstrp] number of EM bootstraps complete: 53 [bstrp] number of EM bootstraps complete: 54 [bstrp] number of EM bootstraps complete: 55 [bstrp] number of EM bootstraps complete: 56 [bstrp] number of EM bootstraps complete: 57 [bstrp] number of EM bootstraps complete: 58 [bstrp] number of EM bootstraps complete: 59 [bstrp] number of EM bootstraps complete: 60 [bstrp] number of EM bootstraps complete: 61 [bstrp] number of EM bootstraps complete: 62 [bstrp] number of EM bootstraps complete: 63 [bstrp] number of EM bootstraps complete: 64 [bstrp] number of EM bootstraps complete: 65 [bstrp] number of EM bootstraps complete: 66 [bstrp] number of EM bootstraps complete: 67 [bstrp] number of EM bootstraps complete: 68 [bstrp] number of EM bootstraps complete: 69 [bstrp] number of EM bootstraps complete: 70 [bstrp] number of EM bootstraps complete: 71 [bstrp] number of EM bootstraps complete: 72 [bstrp] number of EM bootstraps complete: 73 [bstrp] number of EM bootstraps complete: 74 [bstrp] number of EM bootstraps complete: 75 [bstrp] number of EM bootstraps complete: 76 [bstrp] number of EM bootstraps complete: 77 [bstrp] number of EM bootstraps complete: 78 [bstrp] number of EM bootstraps complete: 79 [bstrp] number of EM bootstraps complete: 80 [bstrp] number of EM bootstraps complete: 81 [bstrp] number of EM bootstraps complete: 82 [bstrp] number of EM bootstraps complete: 83 [bstrp] number of EM bootstraps complete: 84 [bstrp] number of EM bootstraps complete: 85 [bstrp] number of EM bootstraps complete: 86 [bstrp] number of EM bootstraps complete: 87 [bstrp] number of EM bootstraps complete: 88 [bstrp] number of EM bootstraps complete: 89 [bstrp] number of EM bootstraps complete: 90 [bstrp] number of EM bootstraps complete: 91 [bstrp] number of EM bootstraps complete: 92 [bstrp] number of EM bootstraps complete: 93 [bstrp] number of EM bootstraps complete: 94 [bstrp] number of EM bootstraps complete: 95 [bstrp] number of EM bootstraps complete: 96 [bstrp] number of EM bootstraps complete: 97 [bstrp] number of EM bootstraps complete: 98 [bstrp] number of EM bootstraps complete: 99 [bstrp] number of EM bootstraps complete: 100 + diff --git a/quant/M1-Ach-Enth_S10/run_info.json b/quant/M1-Ach-Enth_S10/run_info.json new file mode 100644 index 0000000..f001811 --- /dev/null +++ b/quant/M1-Ach-Enth_S10/run_info.json @@ -0,0 +1,13 @@ +{ + "n_targets": 49537, + "n_bootstraps": 100, + "n_processed": 23867755, + "n_pseudoaligned": 16718762, + "n_unique": 7378556, + "p_pseudoaligned": 70.0, + "p_unique": 30.9, + "kallisto_version": "0.46.2", + "index_version": 10, + "start_time": "Wed Jul 28 20:45:18 2021", + "call": "kallisto quant --rf-stranded -t 8 -b 100 -i kalindex/Macaca_mulatta.Mmul_10.cdna.all.idx -o quant/M1-Ach-Enth_S10 M1-Ach-Enth_S10.fastq.1.gz M1-Ach-Enth_S10.fastq.2.gz" +}