colorset.R

# Color palette for mouse kidney snRNA/ATAC and ST project
# v7 - 04/03/2023

col_cell_type = c("NP" = "#E41A1C",
"UBP" = "#377EB8",
"NZS_CS_mix" = "#4DAF4A",
"LOH_AL" = "#984EA3",
"NZS" = "#FF7F00",
"IM" = "#FFFF33",
"CS" = "#A65628",
"Endo" = "#F781BF",
"Podo" = "#999999",
"PT" = "#8DD3C7",
"unknown" = "#FFFFB3",
"MS" = "#BEBADA",
"Macro" = "#FB8072",
"CD_IC" = "#80B1D3",
"CNT" = "#FDB462",
"DCT" = "#B3DE69",
"Fib" = "#FCCDE5",
"T" = "#D9D9D9",
"CD_PC" = "#BC80BD",
"B/Plasma" = "#CCEBC5",
"PT(S1)" = "#D95F02",
"PT(S2)" = "#003366",
"PT(S3)" = "#1B9E77",
"LOH_DL" = "#7570B3",
"PT(proliferating)" = "#E7298A",
"Uro" = "#66A61E",
"JGA" = "#E6AB02",
"cDC" = "#FFC0CB")

col_age = c("E16.5" = "#8DD3C7",
"P0" = "#FFFFB3",
"W1" = "#B3DE69",
"W2" = "#BC80BD",
"W3" = "#BEBADA",
"W12" = "#FB8072",
"W52" = "#80B1D3",
"W92" = "#B3DE69",
"W113" = "#FDB462")

col_sex = c('M' = 'blue',
	'F' = 'red',
	'Male' = 'blue',
	'Female' = 'red')

col_platform = c('snATAC' = "#80c39b", 
	'snRNA' = "#85a8d0", 
	'ST' = "#f668b3")