references.bib

@book{molnar2019,
  title={Interpretable Machine Learning},
  author={Molnar, Christoph},
  year={2019},
  publisher={Leanpub},
  note={https://christophm.github.io/interpretable-ml-book/}
}

@book{james2021,
  title={An Introduction to Statistical Learning with Applications in R},
  author={James, Gareth and Witten, Daniela and Hastie, Trevor and Tibshirani, Robert},
  year={2021},
  edition={2nd},
  publisher={Springer},
  address={New York}
}

@book{ramsay2005functional,
  title={Functional Data Analysis},
  author={Ramsay, J. O. and Silverman, B. W.},
  year={2005},
  edition={2nd},
  publisher={Springer},
  address={New York}
}

@article{krause1975blitecast,
  title     = {BLITECAST: A Computerized Forecast of Potato Late Blight},
  author    = {Krause, R.A. and Massie, L.B. and Hyre, R.A.},
  journal   = {The Plant Disease Reporter},
  volume    = {59},
  number    = {2},
  pages     = {95},
  year      = {1975},
  month     = {feb}
}

@book{campbell1990introduction,
  title={Introduction to Plant Disease Epidemiology},
  author={Campbell, C. L. and Madden, L. V.},
  year={1990},
  publisher={John Wiley \& Sons},
  address={New York}
}

@book{jones2010remote,
  title     = {Remote Sensing of Vegetation: Principles, Techniques, and Applications},
  author    = {Jones, Hamlyn G. and Vaughan, Robin A.},
  year      = {2010},
  publisher = {Oxford University Press},
  address   = {Oxford, United Kingdom},
  isbn      = {9780199207794}
}

@article{reis2002modelo,
  author    = {Reis, Erlei M. and Hoffmann, Laércio L. and Blum, Marta},
  title     = {Modelo de ponto crítico para estimar os danos causados pelo oídio em cevada},
  journal   = {Fitopatologia Brasileira},
  volume    = {27},
  pages     = {644-646},
  year      = {2002}
}

@article{nelson1996simple,
  title={A simple analysis of disease foci},
  author={Nelson, S.C.},
  journal={Phytopathology},
  volume={86},
  number={4},
  pages={432--439},
  year={1996}
}

@article{laranjeira1998dinamica,
  title={Din{\^a}mica e estrutura de focos da clorose variegada dos citros (CVC)},
  author={Laranjeira, F.F. and Bergamin Filho, A.R. and Amorim, L.I.},
  journal={Fitopatologia Brasileira},
  volume={23},
  number={1},
  pages={36--41},
  year={1998}
}

@InBook{chapter2007b,
  author    = {{Madden}, {Laurence V.} and {Hughes}, {Gareth} and {van den Bosch}, {Frank}},
  chapter   = {4},
  pages     = {63--116},
  publisher = {The American Phytopathological Society},
  title     = {Temporal Analysis I: Quantifying and Comparing Epidemics},
  year      = {2007},
  month     = {08},
  date      = {2007-08-02},
  doi       = {10.1094/9780890545058.004},
  url       = {http://dx.doi.org/10.1094/9780890545058.004},
}

@InBook{chapter2007,
  author    = {{Madden}, {Laurence V.} and {Hughes}, {Gareth} and {van den Bosch}, {Frank}},
  chapter   = {9},
  pages     = {235--278},
  publisher = {The American Phytopathological Society},
  title     = {Spatial Aspects of Epidemics{\textemdash}III: Patterns of Plant Disease},
  year      = {2007},
  month     = {08},
  date      = {2007-08-02},
  doi       = {10.1094/9780890545058.009},
  url       = {http://dx.doi.org/10.1094/9780890545058.009},
}

@Book{madden2007,
  author    = {Madden, Laurence V. and Hughes, Gareth and {van den Bosch}, Frank},
  publisher = {The American Phytopathological Society},
  title     = {The Study of Plant Disease Epidemics},
  year      = {2007},
  month     = {08},
  date      = {2007-08-02},
  doi       = {10.1094/9780890545058},
  url       = {http://dx.doi.org/10.1094/9780890545058},
}

@article{jeger2001,
	title = {The use of the area under the disease-progress curve (AUDPC) to assess quantitative disease resistance in crop cultivars},
	author = {Jeger, M. J. and Viljanen-Rollinson, S. L. H.},
	year = {2001},
	month = {01},
	date = {2001-01},
	journal = {Theoretical and Applied Genetics},
	pages = {32--40},
	volume = {102},
	number = {1},
	doi = {10.1007/s001220051615},
	url = {http://dx.doi.org/10.1007/s001220051615},
	langid = {en}
}

@article{simko2012,
	title = {The Area Under the Disease Progress Stairs: Calculation, Advantage, and Application},
	author = {Simko, Ivan and Piepho, Hans-Peter},
	year = {2012},
	month = {04},
	date = {2012-04},
	journal = {Phytopathology®},
	pages = {381--389},
	volume = {102},
	number = {4},
	doi = {10.1094/phyto-07-11-0216},
	url = {http://dx.doi.org/10.1094/phyto-07-11-0216},
	langid = {en}
}

@Article{xu2004,
  author  = {Xu, X.-M. and Madden, L. V.},
  journal = {Plant Pathology},
  title   = {Use of {SADIE} statistics to study spatial dynamics of plant disease epidemics},
  year    = {2004},
  month   = {02},
  number  = {1},
  pages   = {38--49},
  volume  = {53},
  date    = {2004-02},
  doi     = {10.1111/j.1365-3059.2004.00949.x},
  langid  = {en},
  url     = {http://dx.doi.org/10.1111/j.1365-3059.2004.00949.x},
}

@article{li2011,
	title = {Spatial analysis by distance indices: an alternative local clustering index for studying spatial patterns},
	author = {Li, Baohua and Madden, Laurence V. and Xu, Xiangming},
	year = {2011},
	month = {11},
	date = {2011-11-11},
	journal = {Methods in Ecology and Evolution},
	pages = {368--377},
	volume = {3},
	number = {2},
	doi = {10.1111/j.2041-210x.2011.00165.x},
	url = {http://dx.doi.org/10.1111/j.2041-210x.2011.00165.x},
	langid = {en}
}

@article{bock2021,
	title = {A phytopathometry glossary for the twenty-first century: towards consistency and precision in intra- and inter-disciplinary dialogues},
	author = {Bock, Clive H. and Pethybridge, Sarah J. and Barbedo, Jayme G. A. and Esker, Paul D. and Mahlein, Anne-Katrin and Del Ponte, Emerson M.},
	year = {2021},
	month = {08},
	date = {2021-08-02},
	journal = {Tropical Plant Pathology},
	pages = {14--24},
	volume = {47},
	number = {1},
	doi = {10.1007/s40858-021-00454-0},
	url = {http://dx.doi.org/10.1007/s40858-021-00454-0},
	langid = {en}
}

@article{nutter2006,
	title = {Disease Assessment Concepts and the Advancements Made in Improving the Accuracy and Precision of Plant Disease Data},
	author = {Nutter, Forrest W. and Esker, Paul D. and Netto, Rosalee A. Coelho},
	year = {2006},
	month = {05},
	date = {2006-05},
	journal = {European Journal of Plant Pathology},
	pages = {95--103},
	volume = {115},
	number = {1},
	doi = {10.1007/s10658-005-1230-z},
	url = {http://dx.doi.org/10.1007/s10658-005-1230-z},
	langid = {en}
}

@article{shrout1979,
	title = {Intraclass correlations: Uses in assessing rater reliability.},
	author = {Shrout, Patrick E. and Fleiss, Joseph L.},
	year = {1979},
	date = {1979},
	journal = {Psychological Bulletin},
	pages = {420--428},
	volume = {86},
	number = {2},
	doi = {10.1037/0033-2909.86.2.420},
	url = {http://dx.doi.org/10.1037/0033-2909.86.2.420},
	langid = {en}
}

@article{barnhart2002,
	title = {Overall Concordance Correlation Coefficient for Evaluating Agreement Among Multiple Observers},
	author = {Barnhart, Huiman X. and Haber, Michael and Song, Jingli},
	year = {2002},
	month = {12},
	date = {2002-12},
	journal = {Biometrics},
	pages = {1020--1027},
	volume = {58},
	number = {4},
	doi = {10.1111/j.0006-341x.2002.01020.x},
	url = {http://dx.doi.org/10.1111/j.0006-341x.2002.01020.x},
	langid = {en}
}

@article{lin1989,
	title = {A Concordance Correlation Coefficient to Evaluate Reproducibility},
	author = {Lin, Lawrence I-Kuei},
	year = {1989},
	month = {03},
	date = {1989-03},
	journal = {Biometrics},
	pages = {255},
	volume = {45},
	number = {1},
	doi = {10.2307/2532051},
	url = {http://dx.doi.org/10.2307/2532051}
}

@article{olivoto2022,
	title = {Measuring plant disease severity in R: introducing and evaluating the pliman package},
	author = {Olivoto, Tiago and Andrade, Sheila M. P. and M. Del Ponte, Emerson},
	year = {2022},
	month = {02},
	date = {2022-02},
	journal = {Tropical Plant Pathology},
	pages = {95--104},
	volume = {47},
	number = {1},
	doi = {10.1007/s40858-021-00487-5},
	url = {http://dx.doi.org/10.1007/s40858-021-00487-5},
	langid = {en}
}

@article{olivoto2022a,
	title = {Lights, camera, pliman! An R package for plant image analysis},
	author = {Olivoto, Tiago},
	year = {2022},
	month = {02},
	date = {2022-02-12},
	journal = {Methods in Ecology and Evolution},
	pages = {789--798},
	volume = {13},
	number = {4},
	doi = {10.1111/2041-210x.13803},
	url = {http://dx.doi.org/10.1111/2041-210X.13803},
	langid = {en}
}

@article{delponte2017,
	title = {Standard Area Diagrams for Aiding Severity Estimation: Scientometrics, Pathosystems, and Methodological Trends in the Last 25 Years},
	author = {Del Ponte, Emerson M. and Pethybridge, Sarah J. and Bock, Clive H. and Michereff, Sami J. and Machado, Franklin J. and Spolti, {Piérri}},
	year = {2017},
	month = {10},
	date = {2017-10},
	journal = {Phytopathology®},
	pages = {1161--1174},
	volume = {107},
	number = {10},
	doi = {10.1094/phyto-02-17-0069-fi},
	url = {http://dx.doi.org/10.1094/PHYTO-02-17-0069-FI},
	langid = {en}
}

@Article{Moran1950,
  author    = {Moran, P. A. P.},
  journal   = {Biometrika},
  title     = {Notes on Continuous Stochastic Phenomena},
  year      = {1950},
  month     = {jun},
  number    = {1/2},
  pages     = {17},
  volume    = {37},
  doi       = {10.2307/2332142},
  publisher = {{JSTOR}},
}

@Book{Campbell1990,
  author    = {Campbell, C. L. and Madden. L., V.},
  publisher = {Wiley},
  title     = {Introduction to plant disease epidemiology},
  year      = {1990},
  isbn      = {0471832367},
  pages     = {532},
}

@Manual{gigot2018,
  title  = {epiphy: Analysis of Plant Disease Epidemics},
  author = {Christophe Gigot},
  note   = {http://epiphy.org, https://github.com/chgigot/epiphy},
  year   = {2018},
}

@Comment{jabref-meta: databaseType:bibtex;}

@inbook{agrios2005b,
	title = {Plant Disease Epidemiology},
	author = {Agrios, George N.},
	year = {2005},
	date = {2005},
	publisher = {Elsevier},
	pages = {265--291},
	doi = {10.1016/b978-0-08-047378-9.50014-2},
	url = {http://dx.doi.org/10.1016/b978-0-08-047378-9.50014-2}
}

@book{plantdi1963,
	title = {Plant Disease Epidemics and Control},
	author = {Vanderplank, J},
	year = {1963},
	date = {1963},
	publisher = {Elsevier},
	doi = {10.1016/c2013-0-11642-x},
	url = {http://dx.doi.org/10.1016/C2013-0-11642-X}
}

@article{zadoks1988,
	title = {James Edward Vanderplank: Maverick* and Innovator},
	author = {Zadoks, J. C. and Schein, R. D.},
	year = {1988},
	month = {09},
	date = {1988-09},
	journal = {Annual Review of Phytopathology},
	pages = {31--37},
	volume = {26},
	number = {1},
	doi = {10.1146/annurev.py.26.090188.000335},
	url = {http://dx.doi.org/10.1146/annurev.py.26.090188.000335},
	langid = {en}
}

@article{thresh1998,
	title = {In memory of James Edward Vanderplank 1909{\textendash}1997},
	author = {Thresh, J. M.},
	year = {1998},
	month = {04},
	date = {1998-04},
	journal = {Plant Pathology},
	pages = {114--115},
	volume = {47},
	number = {2},
	doi = {10.1046/j.1365-3059.2998.00220.x},
	url = {http://dx.doi.org/10.1046/j.1365-3059.2998.00220.x},
	langid = {en}
}

@article{mikaberidze2016,
	title = {Invasiveness of plant pathogens depends on the spatial scale of host distribution},
	author = {Mikaberidze, Alexey and Mundt, Christopher C. and Bonhoeffer, Sebastian},
	year = {2016},
	month = {06},
	date = {2016-06},
	journal = {Ecological Applications},
	pages = {1238--1248},
	volume = {26},
	number = {4},
	doi = {10.1890/15-0807},
	url = {http://dx.doi.org/10.1890/15-0807},
	langid = {en}
}

@article{Sackett2005,
	title = {Primary Disease Gradients of Wheat Stripe Rust in Large Field Plots},
	author = {Sackett, Kathryn E. and Mundt, Christopher C.},
	year = {2005},
	month = {09},
	date = {2005-09},
	journal = {Phytopathology®},
	pages = {983--991},
	volume = {95},
	number = {9},
	doi = {10.1094/phyto-95-0983},
	url = {http://dx.doi.org/10.1094/PHYTO-95-0983},
	langid = {en}
}

@misc{mikaberidze2015,
	title = {Data from: Invasiveness of plant pathogens depends on the spatial scale of host distribution},
	author = {Mikaberidze, Alexey and Mundt, Christopher C. and Bonhoeffer, Sebastian},
	year = {2015},
	date = {2015},
	publisher = {Dryad},
	doi = {10.5061/DRYAD.F2J8S},
	url = {http://datadryad.org/stash/dataset/doi:10.5061/dryad.f2j8s},
	langid = {en}
}

@article{mundt1999,
	title = {Primary Disease Gradients of Bacterial Blight of Rice},
	author = {Mundt, Christopher C. and Ahmed, Hafiz U. and Finckh, Maria R. and Nieva, Lorna P. and Alfonso, Rizal F.},
	year = {1999},
	month = {01},
	date = {1999-01},
	journal = {Phytopathology®},
	pages = {64--67},
	volume = {89},
	number = {1},
	doi = {10.1094/phyto.1999.89.1.64},
	url = {http://dx.doi.org/10.1094/phyto.1999.89.1.64},
	langid = {en}
}

@article{parker1997,
	title = {Directional Spread of Septoria Leaf Spot in Tomato Rows},
	author = {Parker, S. K. and Nutter, F. W. and Gleason, M. L.},
	year = {1997},
	month = {03},
	date = {1997-03},
	journal = {Plant Disease},
	pages = {272--276},
	volume = {81},
	number = {3},
	doi = {10.1094/pdis.1997.81.3.272},
	url = {http://dx.doi.org/10.1094/pdis.1997.81.3.272},
	langid = {en}
}

@article{alves2021,
	title = {RGB-based phenotyping of foliar disease severity under controlled conditions},
	author = {Alves, Kaique S. and {Guimarães}, Mariana and Ascari, {João Paulo} and Queiroz, Marcia F. and Alfenas, Rafael F. and Mizubuti, Eduardo S. G. and Del Ponte, Emerson M.},
	year = {2021},
	month = {07},
	date = {2021-07-22},
	journal = {Tropical Plant Pathology},
	pages = {105--117},
	volume = {47},
	number = {1},
	doi = {10.1007/s40858-021-00448-y},
	url = {http://dx.doi.org/10.1007/S40858-021-00448-Y},
	langid = {en}
}

@article{francl2001,
	title = {The..Disease Triangle: A Plant Pathological Paradigm Revisited.},
	author = {Francl, L. J.},
	year = {2001},
	date = {2001},
	journal = {The Plant Health Instructor},
	doi = {10.1094/phi-t-2001-0517-01},
	url = {http://dx.doi.org/10.1094/PHI-T-2001-0517-01}
}

@article{Chiang2022,
	title = {Understanding the ramifications of quantitative ordinal scales on accuracy of estimates of disease severity and data analysis in plant pathology},
	author = {Chiang, Kuo-Szu and Bock, Clive H.},
	year = {2021},
	month = {07},
	date = {2021-07-13},
	journal = {Tropical Plant Pathology},
	pages = {58--73},
	volume = {47},
	number = {1},
	doi = {10.1007/s40858-021-00446-0},
	url = {http://dx.doi.org/10.1007/s40858-021-00446-0},
	langid = {en}
}

@article{hebert1982,
	title = {The Rationale for the Horsfall-Barratt Plant Disease Assessment Scale},
	author = {Hebert, T. T.},
	year = {1982},
	date = {1982},
	journal = {Phytopathology},
	pages = {1269},
	volume = {72},
	number = {10},
	doi = {10.1094/phyto-72-1269},
	url = {http://dx.doi.org/10.1094/phyto-72-1269}
}

@article{chester1950,
	title = {Plant disease losses : their appraisal and interpretation /},
	author = {Chester, K. Starr and , },
	year = {1950},
	date = {1950},
	doi = {10.5962/bhl.title.86198},
	url = {http://dx.doi.org/10.5962/bhl.title.86198}
}

@article{scott1974,
	title = {Effects of eyespot on the yield of winter wheat},
	author = {Scott, P. R. and Hollins, T. W.},
	year = {1974},
	month = {12},
	date = {1974-12},
	journal = {Annals of Applied Biology},
	pages = {269--279},
	volume = {78},
	number = {3},
	doi = {10.1111/j.1744-7348.1974.tb01506.x},
	url = {http://dx.doi.org/10.1111/j.1744-7348.1974.tb01506.x},
	langid = {en}
}

@article{nutter2006a,
	title = {The Role of Psychophysics in Phytopathology: The Weber{\textendash}Fechner Law Revisited},
	author = {Nutter, Forrest W. and Esker, Paul D.},
	year = {2006},
	month = {02},
	date = {2006-02},
	journal = {European Journal of Plant Pathology},
	pages = {199--213},
	volume = {114},
	number = {2},
	doi = {10.1007/s10658-005-4732-9},
	url = {http://dx.doi.org/10.1007/s10658-005-4732-9},
	langid = {en}
}

@article{bock2013,
	title = {The Effect of Horsfall-Barratt Category Size on the Accuracy and Reliability of Estimates of Pecan Scab Severity},
	author = {Bock, Clive H. and Wood, Bruce W. and van den Bosch, Frank and Parnell, Stephen and Gottwald, Tim R.},
	year = {2013},
	month = {06},
	date = {2013-06},
	journal = {Plant Disease},
	pages = {797--806},
	volume = {97},
	number = {6},
	doi = {10.1094/pdis-08-12-0781-re},
	url = {http://dx.doi.org/10.1094/pdis-08-12-0781-re},
	langid = {en}
}

@article{liu2019,
	title = {Effects of Quantitative Ordinal Scale Design on the Accuracy of Estimates of Mean Disease Severity},
	author = {Liu, Hung I. and Tsai, Jia Ren and Chung, Wen Hsin and Bock, Clive H. and Chiang, Kuo Szu},
	year = {2019},
	month = {09},
	date = {2019-09-19},
	journal = {Agronomy},
	pages = {565},
	volume = {9},
	number = {9},
	doi = {10.3390/agronomy9090565},
	url = {http://dx.doi.org/10.3390/agronomy9090565},
	langid = {en}
}

@article{chiang2014,
	title = {What Interval Characteristics Make a Good Categorical Disease Assessment Scale?},
	author = {Chiang, Kuo-Szu and Liu, Shih-Chia and Bock, Clive H. and Gottwald, Tim R.},
	year = {2014},
	month = {06},
	date = {2014-06},
	journal = {Phytopathology®},
	pages = {575--585},
	volume = {104},
	number = {6},
	doi = {10.1094/phyto-10-13-0279-r},
	url = {http://dx.doi.org/10.1094/phyto-10-13-0279-r},
	langid = {en}
}

@article{savary2019,
	title = {The global burden of pathogens and pests on major food crops},
	author = {Savary, Serge and Willocquet, Laetitia and Pethybridge, Sarah Jane and Esker, Paul and McRoberts, Neil and Nelson, Andy},
	year = {2019},
	month = {02},
	date = {2019-02-04},
	journal = {Nature Ecology & Evolution},
	pages = {430--439},
	volume = {3},
	number = {3},
	doi = {10.1038/s41559-018-0793-y},
	url = {http://dx.doi.org/10.1038/s41559-018-0793-y},
	langid = {en}
}

@inbook{chapter2007a,
	title = {CHAPTER 12: Epidemics and Crop Yield},
	editor = {Madden, Laurence V. and Hughes, Gareth and van den Bosch, Frank},
	year = {2007},
	month = {08},
	date = {2007-08-02},
	publisher = {The American Phytopathological Society},
	pages = {353--388},
	doi = {10.1094/9780890545058.012},
	url = {http://dx.doi.org/10.1094/9780890545058.012}
}

@article{malaker2016,
	title = {First Report of Wheat Blast Caused by {\emph{Magnaporthe oryzae}} Pathotype {\emph{triticum}} in Bangladesh},
	author = {Malaker, P. K. and Barma, N. C. D. and Tiwari, T. P. and Collis, W. J. and Duveiller, E. and Singh, P. K. and Joshi, A. K. and Singh, R. P. and Braun, H.-J. and Peterson, G. L. and Pedley, K. F. and Farman, M. L. and Valent, B.},
	year = {2016},
	month = {11},
	date = {2016-11},
	journal = {Plant Disease},
	pages = {2330--2330},
	volume = {100},
	number = {11},
	doi = {10.1094/pdis-05-16-0666-pdn},
	url = {http://dx.doi.org/10.1094/pdis-05-16-0666-pdn},
	langid = {en}
}

@article{islam2019b,
	title = {Wheat Blast in Bangladesh: The Current Situation and Future Impacts},
	author = {Islam, M. Tofazzal and Kim, Kwang-Hyung and Choi, Jaehyuk},
	year = {2019},
	month = {02},
	date = {2019-02-01},
	journal = {The Plant Pathology Journal},
	pages = {1--10},
	volume = {35},
	number = {1},
	doi = {10.5423/ppj.rw.08.2018.0168},
	url = {http://dx.doi.org/10.5423/ppj.rw.08.2018.0168},
	langid = {en}
}

@article{godoy2016,
	title = {Asian soybean rust in Brazil: past, present, and future},
	author = {Godoy, {Cláudia Vieira} and Seixas, Claudine Dinali Santos and Soares, Rafael Moreira and {Marcelino-Guimarães}, Franscismar Correa and Meyer, {Maurício Conrado} and Costamilan, Leila Maria},
	year = {2016},
	month = {05},
	date = {2016-05},
	journal = {Pesquisa Agropecuária Brasileira},
	pages = {407--421},
	volume = {51},
	number = {5},
	doi = {10.1590/s0100-204x2016000500002},
	url = {http://dx.doi.org/10.1590/S0100-204X2016000500002}
}

@article{dallalana2018,
	title = {Meta-analytic modeling of the decline in performance of fungicides for managing soybean rust after a decade of use in Brazil},
	author = {Dalla Lana, F. and Paul, P.A. and Godoy, C.V. and Utiamada, C.M. and Da Silva, L.H.C.P. and Siqueri, F.V. and Forcelini, C.A. and Jaccoud-Filho, D.S. and Miguel-Wruck, D.S. and Borges, E.P. and Juliatti, F.C. and Campos, H.D. and Nunes, J. and Carneiro, L.C. and Canteri, M.G. and Ito, M.F. and Meyer, M.C. and Martins, M.C. and Balardin, R.S. and Furlan, S.H. and Carlin, V.J. and Del Ponte, E.M.},
	year = {2018},
	date = {2018},
	journal = {Plant Disease},
	pages = {807--817},
	volume = {102},
	number = {4},
	doi = {10.1094/PDIS-03-17-0408-RE},
	url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85044211160&doi=10.1094%2fPDIS-03-17-0408-RE&partnerID=40&md5=0437d7a37d3c670c526b2c00985c2429}
}

@article{tembo2020,
	title = {Detection and characterization of fungus (Magnaporthe oryzae pathotype Triticum) causing wheat blast disease on rain-fed grown wheat (Triticum aestivum L.) in Zambia},
	author = {Tembo, Batiseba and Mulenga, Rabson M. and Sichilima, Suwilanji and {M{\textquoteright}siska}, Kenneth K. and Mwale, Moses and Chikoti, Patrick C. and Singh, Pawan K. and He, Xinyao and Pedley, Kerry F. and Peterson, Gary L. and Singh, Ravi P. and Braun, Hans J.},
	editor = {Wang, Zonghua},
	year = {2020},
	month = {09},
	date = {2020-09-21},
	journal = {PLOS ONE},
	pages = {e0238724},
	volume = {15},
	number = {9},
	doi = {10.1371/journal.pone.0238724},
	url = {http://dx.doi.org/10.1371/journal.pone.0238724},
	langid = {en}
}

@article{Yorinori2005,
	title = {Epidemics of Soybean Rust ({\emph{Phakopsora pachyrhizi}}) in Brazil and Paraguay from 2001 to 2003},
	author = {Yorinori, J. T. and Paiva, W. M. and Frederick, R. D. and Costamilan, L. M. and Bertagnolli, P. F. and Hartman, G. E. and Godoy, C. V. and Nunes, J.},
	year = {2005},
	month = {06},
	date = {2005-06},
	journal = {Plant Disease},
	pages = {675--677},
	volume = {89},
	number = {6},
	doi = {10.1094/pd-89-0675},
	url = {http://dx.doi.org/10.1094/PD-89-0675},
	langid = {en}
}

@article{li2019,
	title = {Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation},
	author = {Li, Feng and Upadhyaya, Narayana M. and Sperschneider, Jana and Matny, Oadi and Nguyen-Phuc, Hoa and Mago, Rohit and Raley, Castle and Miller, Marisa E. and Silverstein, Kevin A. T. and Henningsen, Eva and Hirsch, Cory D. and Visser, Botma and Pretorius, Zacharias A. and Steffenson, Brian J. and Schwessinger, Benjamin and Dodds, Peter N. and Figueroa, Melania},
	year = {2019},
	month = {11},
	date = {2019-11-07},
	journal = {Nature Communications},
	volume = {10},
	number = {1},
	doi = {10.1038/s41467-019-12927-7},
	url = {http://dx.doi.org/10.1038/s41467-019-12927-7},
	langid = {en}
}

@article{simulati2014,
	title = {Simulation Modeling in Botanical Epidemiology and Crop Loss Analysis},
	year = {2014},
	date = {2014},
	journal = {The Plant Health Instructor},
	doi = {10.1094/phi-a-2014-0314-01},
	url = {http://dx.doi.org/10.1094/PHI-A-2014-0314-01}
}

@article{Savary2006,
	title = {Quantification and Modeling of Crop Losses: A Review of Purposes},
	author = {Savary, Serge and Teng, Paul S. and Willocquet, Laetitia and Nutter, Forrest W.},
	year = {2006},
	month = {09},
	date = {2006-09-01},
	journal = {Annual Review of Phytopathology},
	pages = {89--112},
	volume = {44},
	number = {1},
	doi = {10.1146/annurev.phyto.44.070505.143342},
	url = {http://dx.doi.org/10.1146/annurev.phyto.44.070505.143342},
	langid = {en}
}

@article{Duffeck2020,
	title = {Modeling Yield Losses and Fungicide Profitability for Managing Fusarium Head Blight in Brazilian Spring Wheat},
	author = {Duffeck, {Maíra Rodrigues} and dos Santos Alves, Kaique and Machado, Franklin Jackson and Esker, Paul David and Del Ponte, Emerson Medeiros},
	year = {2020},
	month = {02},
	date = {2020-02},
	journal = {Phytopathology®},
	pages = {370--378},
	volume = {110},
	number = {2},
	doi = {10.1094/phyto-04-19-0122-r},
	url = {http://dx.doi.org/10.1094/PHYTO-04-19-0122-R},
	langid = {en}
}

@article{lehner2016,
	title = {Meta{-}analytic modelling of the incidence{\textendash}yield and incidence{\textendash}sclerotial production relationships in soybean white mould epidemics},
	author = {Lehner, M. S. and Pethybridge, S. J. and Meyer, M. C. and Del Ponte, E. M.},
	year = {2016},
	month = {08},
	date = {2016-08-14},
	journal = {Plant Pathology},
	pages = {460--468},
	volume = {66},
	number = {3},
	doi = {10.1111/ppa.12590},
	url = {http://dx.doi.org/10.1111/ppa.12590},
	langid = {en}
}

@article{cruz2017,
	title = {Wheat blast disease: danger on the move},
	author = {Cruz, Christian D. and Valent, Barbara},
	year = {2017},
	month = {05},
	date = {2017-05-31},
	journal = {Tropical Plant Pathology},
	pages = {210--222},
	volume = {42},
	number = {3},
	doi = {10.1007/s40858-017-0159-z},
	url = {http://dx.doi.org/10.1007/s40858-017-0159-z},
	langid = {en}
}

@inbook{agrios2005d,
	title = {INTRODUCTION},
	author = {Agrios, George N.},
	year = {2005},
	date = {2005},
	publisher = {Elsevier},
	pages = {3--75},
	doi = {10.1016/b978-0-08-047378-9.50007-5},
	url = {http://dx.doi.org/10.1016/b978-0-08-047378-9.50007-5}
}

@article{Navas-Cortés2000,
	title = {Yield Loss in Chickpeas in Relation to Development of Fusarium Wilt Epidemics},
	author = {{Navas-Cortés}, Juan A. and Hau, Bernhard and {Jiménez-Díaz}, Rafael M.},
	year = {2000},
	month = {11},
	date = {2000-11},
	journal = {Phytopathology®},
	pages = {1269--1278},
	volume = {90},
	number = {11},
	doi = {10.1094/phyto.2000.90.11.1269},
	url = {http://dx.doi.org/10.1094/PHYTO.2000.90.11.1269},
	langid = {en}
}

@article{gonzález-domínguez2014,
	title = {Development and validation of a standard area diagram set to aid assessment of severity of loquat scab on fruit},
	author = {{González-Domínguez}, Elisa and Martins, Ricardo Brainer and Del Ponte, Emerson Medeiros and Michereff, Sami Jorge and {García-Jiménez}, {José} and Armengol, Josep},
	year = {2014},
	month = {02},
	date = {2014-02-21},
	journal = {European Journal of Plant Pathology},
	doi = {10.1007/s10658-014-0400-2},
	url = {http://dx.doi.org/10.1007/s10658-014-0400-2},
	langid = {en}
}

@article{franceschi2020,
	title = {A new standard area diagram set for assessment of severity of soybean rust improves accuracy of estimates and optimizes resource use},
	author = {Franceschi, Vinicius T. and Alves, Kaique S. and Mazaro, Sergio M. and Godoy, {Cláudia V.} and Duarte, Henrique S. S. and Del Ponte, Emerson M.},
	year = {2020},
	month = {02},
	date = {2020-02-04},
	journal = {Plant Pathology},
	pages = {495--505},
	volume = {69},
	number = {3},
	doi = {10.1111/ppa.13148},
	url = {http://dx.doi.org/10.1111/ppa.13148},
	langid = {en}
}

@article{yadav2012,
	title = {Development and validation of standard area diagrams to aid assessment of pecan scab symptoms on fruit},
	author = {Yadav, N. V. S. and de Vos, S. M. and Bock, C. H. and Wood, B. W.},
	year = {2012},
	month = {07},
	date = {2012-07-02},
	journal = {Plant Pathology},
	pages = {325--335},
	volume = {62},
	number = {2},
	doi = {10.1111/j.1365-3059.2012.02641.x},
	url = {http://dx.doi.org/10.1111/j.1365-3059.2012.02641.x},
	langid = {en}
}

@article{delponte2022,
	title = {How much do standard area diagrams improve accuracy of visual estimates of the percentage area diseased? A systematic review and meta-analysis},
	author = {Del Ponte, Emerson M. and {Cazón}, Luis Ignacio and Alves, Kaique S. and Pethybridge, Sarah J. and Bock, Clive H.},
	year = {2022},
	month = {01},
	date = {2022-01-11},
	journal = {Tropical Plant Pathology},
	pages = {43--57},
	volume = {47},
	number = {1},
	doi = {10.1007/s40858-021-00479-5},
	url = {http://dx.doi.org/10.1007/s40858-021-00479-5},
	langid = {en}
}

@article{moreira2018,
	title = {Improving accuracy, precision and reliability of severity estimates of Glomerella leaf spot on apple leaves using a new standard area diagram set},
	author = {Moreira, Rafaele Regina and da Silva Silveira Duarte, Henrique and De Mio, Louise Larissa May},
	year = {2018},
	month = {10},
	date = {2018-10-26},
	journal = {European Journal of Plant Pathology},
	pages = {975--982},
	volume = {153},
	number = {3},
	doi = {10.1007/s10658-018-01610-0},
	url = {http://dx.doi.org/10.1007/s10658-018-01610-0},
	langid = {en}
}

@article{pereira2020,
	title = {Severity assessment in the Nicotiana tabacum-Xylella fastidiosa subsp. pauca pathosystem: design and interlaboratory validation of a standard area diagram set},
	author = {Pereira, Willian Eduardo Lino and de Andrade, Sheila Maria Pereira and Del Ponte, Emerson M. and Esteves, Mariana Bossi and Canale, Maria Cristina and Takita, {Marco Aurélio} and Coletta-Filho, {Helvécio Della} and De Souza, Alessandra Alves},
	year = {2020},
	month = {11},
	date = {2020-11-09},
	journal = {Tropical Plant Pathology},
	pages = {710--722},
	volume = {45},
	number = {6},
	doi = {10.1007/s40858-020-00401-5},
	url = {http://dx.doi.org/10.1007/s40858-020-00401-5},
	langid = {en}
}

@article{brown2021,
	title = {An Introduction to Linear Mixed-Effects Modeling in R},
	author = {Brown, Violet A.},
	year = {2021},
	month = {01},
	date = {2021-01},
	journal = {Advances in Methods and Practices in Psychological Science},
	pages = {251524592096035},
	volume = {4},
	number = {1},
	doi = {10.1177/2515245920960351},
	url = {http://dx.doi.org/10.1177/2515245920960351},
	langid = {en}
}

@article{heck2021,
	title = {Incidence, spatial pattern and temporal progress of fusarium wilt of bananas},
	author = {Heck, D.W. and Dita, M. and Del Ponte, E.M. and Mizubuti, E.S.G.},
	year = {2021},
	date = {2021},
	journal = {Journal of Fungi},
	volume = {7},
	number = {8},
	doi = {10.3390/jof7080646},
	url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85112784905&doi=10.3390%2fjof7080646&partnerID=40&md5=4169ec6f1d53e1a8c536522522e77ffa}
}

@article{baddeley2014,
	title = {On tests of spatial pattern based on simulation envelopes},
	author = {Baddeley, Adrian and Diggle, Peter J. and Hardegen, Andrew and Lawrence, Thomas and Milne, Robin K. and Nair, Gopalan},
	year = {2014},
	month = {08},
	date = {2014-08},
	journal = {Ecological Monographs},
	pages = {477--489},
	volume = {84},
	number = {3},
	doi = {10.1890/13-2042.1},
	url = {http://dx.doi.org/10.1890/13-2042.1},
	langid = {en}
}

@article{baddeley2005,
	title = {Residual analysis for spatial point processes (with discussion)},
	author = {Baddeley, A. and Turner, R. and Moller, J. and Hazelton, M.},
	year = {2005},
	month = {11},
	date = {2005-11},
	journal = {Journal of the Royal Statistical Society: Series B (Statistical Methodology)},
	pages = {617--666},
	volume = {67},
	number = {5},
	doi = {10.1111/j.1467-9868.2005.00519.x},
	url = {http://dx.doi.org/10.1111/j.1467-9868.2005.00519.x},
	langid = {en}
}

@article{bock2021a,
	title = {Plant disease severity estimated visually: a century of research, best practices, and opportunities for improving methods and practices to maximize accuracy},
	author = {Bock, Clive H. and Chiang, Kuo-Szu and Del Ponte, Emerson M.},
	year = {2021},
	month = {06},
	date = {2021-06-22},
	journal = {Tropical Plant Pathology},
	pages = {25--42},
	volume = {47},
	number = {1},
	doi = {10.1007/s40858-021-00439-z},
	url = {http://dx.doi.org/10.1007/s40858-021-00439-z},
	langid = {en}
}

@article{madden2021,
	title = {Forrest W. Nutter, Jr.: a career in phytopathometry},
	author = {Madden, Laurence V. and Esker, Paul D. and Pethybridge, Sarah J.},
	year = {2021},
	month = {11},
	date = {2021-11-12},
	journal = {Tropical Plant Pathology},
	pages = {5--13},
	volume = {47},
	number = {1},
	doi = {10.1007/s40858-021-00469-7},
	url = {http://dx.doi.org/10.1007/s40858-021-00469-7},
	langid = {en}
}

@article{jesusjunior2004,
	title = {Análise da dinâmica e estrutura de focos da morte súbita dos citros},
	author = {Jesus Junior, Waldir C. de and Bassanezi, Renato B.},
	year = {2004},
	month = {08},
	date = {2004-08},
	journal = {Fitopatologia Brasileira},
	pages = {399--405},
	volume = {29},
	number = {4},
	doi = {10.1590/s0100-41582004000400007},
	url = {http://dx.doi.org/10.1590/S0100-41582004000400007}
}

@article{laranjeira2004,
	title = {Dinâmica espacial da clorose variegada dos citros em três regiões do Estado de São Paulo},
	author = {Laranjeira, Francisco F and Bergamin Filho, Armando and Amorim, Lilian and Gottwald, Tim R},
	year = {2004},
	month = {02},
	date = {2004-02},
	journal = {Fitopatologia Brasileira},
	pages = {56--65},
	volume = {29},
	number = {1},
	doi = {10.1590/s0100-41582004000100009},
	url = {http://dx.doi.org/10.1590/S0100-41582004000100009}
}

@article{wiegand2004,
	title = {Rings, circles, and null-models for point pattern analysis in ecology},
	author = {Wiegand, Thorsten and A. Moloney, Kirk},
	year = {2004},
	month = {02},
	date = {2004-02},
	journal = {Oikos},
	pages = {209--229},
	volume = {104},
	number = {2},
	doi = {10.1111/j.0030-1299.2004.12497.x},
	url = {http://dx.doi.org/10.1111/j.0030-1299.2004.12497.x},
	langid = {en}
}

@article{esser2014,
	title = {Spatial scales of interactions among bacteria and between bacteria and the leaf surface},
	author = {Esser, Daniel S. and Leveau, Johan H.J. and Meyer, Katrin M. and Wiegand, Kerstin},
	year = {2014},
	month = {12},
	date = {2014-12-24},
	journal = {FEMS Microbiology Ecology},
	volume = {91},
	number = {3},
	doi = {10.1093/femsec/fiu034},
	url = {http://dx.doi.org/10.1093/femsec/fiu034},
	langid = {en}
}

 @article{brooks2017,
    author = {Mollie E. Brooks and Kasper Kristensen and Koen J. {van
      Benthem} and Arni Magnusson and Casper W. Berg and Anders Nielsen
      and Hans J. Skaug and Martin Maechler and Benjamin M. Bolker},
    title = {{glmmTMB} Balances Speed and Flexibility Among Packages
      for Zero-inflated Generalized Linear Mixed Modeling},
    year = {2017},
    journal = {The R Journal},
    doi = {10.32614/RJ-2017-066},
    pages = {378--400},
    volume = {9},
    number = {2},
  }

@article{alves2021a,
	title = {Analysis and simulation of plant disease progress curves in R: introducing the epifitter package},
	author = {Alves, Kaique S. and Del Ponte, Emerson M.},
	year = {2021},
	month = {09},
	date = {2021-09-03},
	journal = {Phytopathology Research},
	volume = {3},
	number = {1},
	doi = {10.1186/s42483-021-00098-7},
	url = {http://dx.doi.org/10.1186/s42483-021-00098-7},
	langid = {en}
}

@article{café-filho2010,
	title = {Temporal and spatial dynamics of watermelon gummy stem blight epidemics},
	author = {{Café-Filho}, Adalberto C. and Santos, Gil R. and Laranjeira, Francisco F.},
	year = {2010},
	month = {08},
	date = {2010-08-31},
	journal = {European Journal of Plant Pathology},
	pages = {473--482},
	volume = {128},
	number = {4},
	doi = {10.1007/s10658-010-9674-1},
	url = {http://dx.doi.org/10.1007/s10658-010-9674-1},
	langid = {en}
}

@article{madden1982,
	title = {Evaluation of Tests for Randomness of Infected Plants},
	author = {Madden, L. V.},
	year = {1982},
	date = {1982},
	journal = {Phytopathology},
	pages = {195},
	volume = {72},
	number = {2},
	doi = {10.1094/phyto-72-195},
	url = {http://dx.doi.org/10.1094/phyto-72-195}
}

@article{chiang2023a,
	title = {Survival Analysis as a Basis to Test Hypotheses When Using Quantitative Ordinal Scale Disease Severity Data},
	author = {Chiang, Kuo-Szu and Chang, Y. M. and Liu, H. I. and Lee, J. Y. and El Jarroudi, Moussa and Bock, Clive},
	year = {2023},
	month = {08},
	date = {2023-08-22},
	journal = {Phytopathology®},
	doi = {10.1094/phyto-02-23-0055-r},
	url = {http://dx.doi.org/10.1094/PHYTO-02-23-0055-R},
	langid = {en}
}

@article{shah2004,
	title = {Nonparametric Analysis of Ordinal Data in Designed Factorial Experiments},
	author = {Shah, D. A. and Madden, L. V.},
	year = {2004},
	month = {01},
	date = {2004-01},
	journal = {Phytopathology®},
	pages = {33--43},
	volume = {94},
	number = {1},
	doi = {10.1094/phyto.2004.94.1.33},
	url = {http://dx.doi.org/10.1094/PHYTO.2004.94.1.33},
	langid = {en}
}

@article{onofri2018,
	title = {Analysing censored data in agricultural research: A review with examples and software tips},
	author = {Onofri, Andrea and Piepho, {Hans{-}Peter} and Kozak, Marcin},
	year = {2018},
	month = {12},
	date = {2018-12-21},
	journal = {Annals of Applied Biology},
	pages = {3--13},
	volume = {174},
	number = {1},
	doi = {10.1111/aab.12477},
	url = {http://dx.doi.org/10.1111/aab.12477},
	langid = {en}
}

@article{madden2011,
	title = {Meta-Analysis for Evidence Synthesis in Plant Pathology: An Overview},
	author = {Madden, L. V. and Paul, P. A.},
	year = {2011},
	month = {01},
	date = {2011-01},
	journal = {Phytopathology®},
	pages = {16--30},
	volume = {101},
	number = {1},
	doi = {10.1094/phyto-03-10-0069},
	url = {http://dx.doi.org/10.1094/PHYTO-03-10-0069},
	langid = {en}
}

@article{dallalana2015,
	title = {Meta-Analysis of the Relationship Between Crop Yield and Soybean Rust Severity},
	author = {Dalla Lana, Felipe and Ziegelmann, Patricia K. and Maia, Aline de H. N. and Godoy, {Cláudia V.} and Del Ponte, Emerson M.},
	year = {2015},
	month = {03},
	date = {2015-03},
	journal = {Phytopathology®},
	pages = {307--315},
	volume = {105},
	number = {3},
	doi = {10.1094/phyto-06-14-0157-r},
	url = {http://dx.doi.org/10.1094/PHYTO-06-14-0157-R},
	langid = {en}
}

@article{lehner2016,
	title = {Meta{-}analytic modelling of the incidence{\textendash}yield and incidence{\textendash}sclerotial production relationships in soybean white mould epidemics},
	author = {Lehner, M. S. and Pethybridge, S. J. and Meyer, M. C. and Del Ponte, E. M.},
	year = {2016},
	month = {08},
	date = {2016-08-14},
	journal = {Plant Pathology},
	pages = {460--468},
	volume = {66},
	number = {3},
	doi = {10.1111/ppa.12590},
	url = {http://dx.doi.org/10.1111/ppa.12590},
	langid = {en}
}

@article{madden2009,
	title = {Assessing Heterogeneity in the Relationship Between Wheat Yield and Fusarium Head Blight Intensity Using Random-Coefficient Mixed Models},
	author = {Madden, L. V. and Paul, P. A.},
	year = {2009},
	month = {07},
	date = {2009-07},
	journal = {Phytopathology®},
	pages = {850--860},
	volume = {99},
	number = {7},
	doi = {10.1094/phyto-99-7-0850},
	url = {http://dx.doi.org/10.1094/PHYTO-99-7-0850},
	langid = {en}
}

@article{viechtbauer2010,
	title = {Conducting Meta-Analyses in{\emph{R}}with the{\textbf{metafor}}Package},
	author = {Viechtbauer, Wolfgang},
	year = {2010},
	date = {2010},
	journal = {Journal of Statistical Software},
	volume = {36},
	number = {3},
	doi = {10.18637/jss.v036.i03},
	url = {http://dx.doi.org/10.18637/jss.v036.i03},
	langid = {en}
}

@article{bates2015,
	title = {Fitting Linear Mixed-Effects Models Using{\textbf{lme4}}},
	author = {Bates, Douglas and {Mächler}, Martin and Bolker, Ben and Walker, Steve},
	year = {2015},
	date = {2015},
	journal = {Journal of Statistical Software},
	volume = {67},
	number = {1},
	doi = {10.18637/jss.v067.i01},
	url = {http://dx.doi.org/10.18637/jss.v067.i01},
	langid = {en}
}

@article{renshaw1982,
	title = {Spatial Processes, Models and Applications},
	author = {Renshaw, Eric and Cliff, A. D. and Ord, J. K.},
	year = {1982},
	month = {03},
	date = {1982-03},
	journal = {Biometrics},
	pages = {287},
	volume = {38},
	number = {1},
	doi = {10.2307/2530324},
	url = {http://dx.doi.org/10.2307/2530324}
}

@article{barro2023,
	title = {Modeling the Severity-Yield Relationships in Soybean Frogeye Leaf Spot Epidemics},
	author = {Barro, Jhonatan and Del Ponte, Emerson Medeiros and Allen, Tom and Bond, Jason P. and Faske, Travis R. and Hollier, Clayton and Kandel, Yuba Raj and Mueller, Daren S. and Kelly, Heather M. and Kleczewski, Nathan Michael and Ames, Keith A. and Price, Paul and Sikora, Edward and Bradley, Carl},
	year = {2023},
	month = {04},
	date = {2023-04-24},
	journal = {Plant Disease},
	doi = {10.1094/pdis-03-23-0440-re},
	url = {http://dx.doi.org/10.1094/PDIS-03-23-0440-RE},
	langid = {en}
}

@article{mumford1984,
	title = {Economics of Decision Making in Pest Management},
	author = {Mumford, J D and Norton, G A},
	year = {1984},
	month = {01},
	date = {1984-01},
	journal = {Annual Review of Entomology},
	pages = {157--174},
	volume = {29},
	number = {1},
	doi = {10.1146/annurev.en.29.010184.001105},
	url = {http://dx.doi.org/10.1146/annurev.en.29.010184.001105},
	langid = {en}
}

@article{derossi2022,
	title = {Crop damage, economic losses, and the economic damage threshold for northern corn leaf blight},
	author = {De Rossi, R.L. and Guerra, F.A. and Plazas, M.C. and Vuletic, E.E. and {Brücher}, E. and Guerra, G.D. and Reis, E.M.},
	year = {2022},
	month = {04},
	date = {2022-04},
	journal = {Crop Protection},
	pages = {105901},
	volume = {154},
	doi = {10.1016/j.cropro.2021.105901},
	url = {http://dx.doi.org/10.1016/j.cropro.2021.105901},
	langid = {en}
}

@article{wallin1962,
	title = {Summary of recent progress in predicting late blight epidemics in United States and Canada},
	author = {Wallin, Jack R.},
	year = {1962},
	month = {08},
	date = {1962-08},
	journal = {American Potato Journal},
	pages = {306--312},
	volume = {39},
	number = {8},
	doi = {10.1007/bf02862155},
	url = {http://dx.doi.org/10.1007/bf02862155},
	langid = {en}
}

@article{madden1978,
	title = {FAST, a Forecast System for Alternaria solani on Tomato},
	author = {Madden, L.},
	year = {1978},
	date = {1978},
	journal = {Phytopathology},
	pages = {1354},
	volume = {68},
	number = {9},
	doi = {10.1094/phyto-68-1354},
	url = {http://dx.doi.org/10.1094/phyto-68-1354}
}

@article{pedigo1986,
	title = {Economic Injury Levels in Theory and Practice},
	author = {Pedigo, L P and Hutchins, S H and Higley, L G},
	year = {1986},
	month = {01},
	date = {1986-01},
	journal = {Annual Review of Entomology},
	pages = {341--368},
	volume = {31},
	number = {1},
	doi = {10.1146/annurev.en.31.010186.002013},
	url = {http://dx.doi.org/10.1146/annurev.en.31.010186.002013},
	langid = {en}
}

@article{nutter1993terms,
  title={Terms and Concepts for Yield, Crop Loss, and Disease Thresholds},
  author={Nutter, Forrest and Teng, Paul and Royer, Matthew},
  journal={Plant Disease},
  volume={77},
  pages={193--211},
  year={1993},
  url={http://doi.org/10.1094/PD-77-211}
}

@article{leiminger2012,
	title = {Early Blight Control in Potato Using Disease-Orientated Threshold Values},
	author = {Leiminger, J. H. and Hausladen, H.},
	year = {2012},
	month = {01},
	date = {2012-01},
	journal = {Plant Disease},
	pages = {124--130},
	volume = {96},
	number = {1},
	doi = {10.1094/pdis-05-11-0431},
	url = {http://dx.doi.org/10.1094/PDIS-05-11-0431},
	langid = {en}
}

@article{bourke1970,
	title = {Use of Weather Information in the Prediction of Plant Disease Epiphytotics},
	author = {Bourke, P M A},
	year = {1970},
	month = {09},
	date = {1970-09},
	journal = {Annual Review of Phytopathology},
	pages = {345--370},
	volume = {8},
	number = {1},
	doi = {10.1146/annurev.py.08.090170.002021},
	url = {http://dx.doi.org/10.1146/annurev.py.08.090170.002021},
	langid = {en}
}

@article{krause1975,
	title = {Predictive Systems: Modern Approaches to Disease Control},
	author = {Krause, R A and Massie, L B},
	year = {1975},
	month = {09},
	date = {1975-09},
	journal = {Annual Review of Phytopathology},
	pages = {31--47},
	volume = {13},
	number = {1},
	doi = {10.1146/annurev.py.13.090175.000335},
	url = {http://dx.doi.org/10.1146/annurev.py.13.090175.000335},
	langid = {en}
}

@article{dewolf2003,
	title = {Risk Assessment Models for Wheat Fusarium Head Blight Epidemics Based on Within-Season Weather Data},
	author = {De Wolf, E. D. and Madden, L. V. and Lipps, P. E.},
	year = {2003},
	month = {04},
	date = {2003-04},
	journal = {Phytopathology®},
	pages = {428--435},
	volume = {93},
	number = {4},
	doi = {10.1094/phyto.2003.93.4.428},
	url = {http://dx.doi.org/10.1094/PHYTO.2003.93.4.428},
	langid = {en}
}

@article{willbur2018,
	title = {Weather-Based Models for Assessing the Risk of {\emph{Sclerotinia sclerotiorum}} Apothecial Presence in Soybean ({\emph{Glycine max}}) Fields},
	author = {Willbur, Jaime F. and Fall, Mamadou L. and Bloomingdale, Christopher and Byrne, Adam M. and Chapman, Scott A. and Isard, Scott A. and Magarey, Roger D. and McCaghey, Megan M. and Mueller, Brian D. and Russo, Joseph M. and Schlegel, Jay and Chilvers, Martin I. and Mueller, Daren S. and Kabbage, Mehdi and Smith, Damon L.},
	year = {2018},
	month = {01},
	date = {2018-01},
	journal = {Plant Disease},
	pages = {73--84},
	volume = {102},
	number = {1},
	doi = {10.1094/pdis-04-17-0504-re},
	url = {http://dx.doi.org/10.1094/PDIS-04-17-0504-RE},
	langid = {en}
}

@article{delponte2006,
	title = {Predicting Severity of Asian Soybean Rust Epidemics with Empirical Rainfall Models},
	author = {Del Ponte, E. M. and Godoy, C. V. and Li, X. and Yang, X. B.},
	year = {2006},
	month = {07},
	date = {2006-07},
	journal = {Phytopathology®},
	pages = {797--803},
	volume = {96},
	number = {7},
	doi = {10.1094/phyto-96-0797},
	url = {http://dx.doi.org/10.1094/PHYTO-96-0797},
	langid = {en}
}

@article{beruski2020,
	title = {Performance and Profitability of Rain-Based Thresholds for Timing Fungicide Applications in Soybean Rust Control},
	author = {Beruski, Gustavo C. and Del Ponte, Emerson M. and Pereira, {André. B.} and Gleason, Mark L. and {Câmara}, Gil M. S. and {Araújo Junior}, Ivan P. and Sentelhas, Paulo C.},
	year = {2020},
	month = {10},
	date = {2020-10},
	journal = {Plant Disease},
	pages = {2704--2712},
	volume = {104},
	number = {10},
	doi = {10.1094/pdis-01-20-0210-re},
	url = {http://dx.doi.org/10.1094/PDIS-01-20-0210-RE},
	langid = {en}
}

@article{rossi2003,
	title = {A model estimating the risk of {\emph{Fusarium}} head blight on wheat*},
	author = {Rossi, V. and {Giosuè}, S. and Pattori, E. and Spanna, F. and Del Vecchio, A.},
	year = {2003},
	month = {12},
	date = {2003-12},
	journal = {EPPO Bulletin},
	pages = {421--425},
	volume = {33},
	number = {3},
	doi = {10.1111/j.1365-2338.2003.00667.x},
	url = {http://dx.doi.org/10.1111/j.1365-2338.2003.00667.x},
	langid = {en}
}

@article{salotti2023,
	title = {A Mechanistic Model Accounting for the Effect of Soil Moisture, Weather, and Host Growth Stage on the Development of {\emph{Sclerotinia sclerotiorum}}},
	author = {Salotti, Irene and Rossi, Vittorio},
	year = {2023},
	month = {02},
	date = {2023-02-01},
	journal = {Plant Disease},
	pages = {514--533},
	volume = {107},
	number = {2},
	doi = {10.1094/pdis-12-21-2743-re},
	url = {http://dx.doi.org/10.1094/pdis-12-21-2743-re},
	langid = {en}
}

@article{rossi2014,
	title = {Use of systems analysis to develop plant disease models based on literature data: grape black-rot as a case-study},
	author = {Rossi, Vittorio and Onesti, Giovanni and Legler, Sara E. and Caffi, Tito},
	year = {2014},
	month = {10},
	date = {2014-10-25},
	journal = {European Journal of Plant Pathology},
	pages = {427--444},
	volume = {141},
	number = {3},
	doi = {10.1007/s10658-014-0553-z},
	url = {http://dx.doi.org/10.1007/s10658-014-0553-z},
	langid = {en}
}

@article{salotti2022,
	title = {Development and Validation of a Mechanistic, Weather-Based Model for Predicting Puccinia graminis f. sp. tritici Infections and Stem Rust Progress in Wheat},
	author = {Salotti, Irene and Bove, Federica and Rossi, Vittorio},
	year = {2022},
	month = {05},
	date = {2022-05-27},
	journal = {Frontiers in Plant Science},
	volume = {13},
	doi = {10.3389/fpls.2022.897680},
	url = {http://dx.doi.org/10.3389/fpls.2022.897680}
}

@article{caffi2010,
	title = {A mechanistic model simulating ascosporic infections by {\emph{Erysiphe necator}}, the powdery mildew fungus of grapevine},
	author = {Caffi, T. and Rossi, V. and Legler, S. E. and Bugiani, R.},
	year = {2010},
	month = {11},
	date = {2010-11-23},
	journal = {Plant Pathology},
	pages = {522--531},
	volume = {60},
	number = {3},
	doi = {10.1111/j.1365-3059.2010.02395.x},
	url = {http://dx.doi.org/10.1111/j.1365-3059.2010.02395.x},
	langid = {en}
}

@article{gonzález-domínguez2023,
	title = {Plant Disease Models and Forecasting: Changes in Principles and Applications over the Last 50 Years},
	author = {{González-Domínguez}, Elisa and Caffi, Tito and Rossi, Vittorio and Salotti, Irene and Fedele, Giorgia},
	year = {2023},
	month = {04},
	date = {2023-04},
	journal = {Phytopathology®},
	pages = {678--693},
	volume = {113},
	number = {4},
	doi = {10.1094/phyto-10-22-0362-kd},
	url = {http://dx.doi.org/10.1094/phyto-10-22-0362-kd},
	langid = {en}
}

@article{caffi2007,
	title = {Empirical vs. mechanistic models for primary infections of {\emph{ Plasmopara viticola}}*},
	author = {Caffi, T. and Rossi, V. and Cossu, A. and Fronteddu, F.},
	year = {2007},
	month = {08},
	date = {2007-08},
	journal = {EPPO Bulletin},
	pages = {261--271},
	volume = {37},
	number = {2},
	doi = {10.1111/j.1365-2338.2007.01120.x},
	url = {http://dx.doi.org/10.1111/j.1365-2338.2007.01120.x},
	langid = {en}
}

@article{delponte2005,
	title = {A risk infection simulation model for fusarium head blight of wheat},
	author = {Del Ponte, Emerson M. and Fernandes, {José Maurício C.} and Pavan, Willingthon},
	year = {2005},
	month = {12},
	date = {2005-12},
	journal = {Fitopatologia Brasileira},
	pages = {634--642},
	volume = {30},
	number = {6},
	doi = {10.1590/s0100-41582005000600011},
	url = {http://dx.doi.org/10.1590/S0100-41582005000600011}
}

@article{hughes1993,
	title = {Using the Beta-Binomial Distribution to Describe Aggregated Patterns of Disease Incidence},
	author = {Hughes, G.},
	year = {1993},
	date = {1993},
	journal = {Phytopathology},
	pages = {759},
	volume = {83},
	number = {9},
	doi = {10.1094/phyto-83-759},
	url = {http://dx.doi.org/10.1094/phyto-83-759}
}

@article{Madden2018,
	title = {Twenty-Five Years of the Binary Power Law for Characterizing Heterogeneity of Disease Incidence},
	author = {Madden, L. V. and Hughes, G. and Moraes, W. Bucker and Xu, X.-M. and Turechek, W. W.},
	year = {2018},
	month = {06},
	date = {2018-06},
	journal = {Phytopathology®},
	pages = {656--680},
	volume = {108},
	number = {6},
	doi = {10.1094/phyto-07-17-0234-rvw},
	url = {http://dx.doi.org/10.1094/PHYTO-07-17-0234-RVW},
	langid = {en}
}

@article{hughes1992,
	title = {Aggregation and incidence of disease},
	author = {Hughes, G. and Madden, L. V.},
	year = {1992},
	month = {12},
	date = {1992-12},
	journal = {Plant Pathology},
	pages = {657--660},
	volume = {41},
	number = {6},
	doi = {10.1111/j.1365-3059.1992.tb02549.x},
	url = {http://dx.doi.org/10.1111/j.1365-3059.1992.tb02549.x},
	langid = {en}
}

@article{hank2018,
	title = {Spaceborne Imaging Spectroscopy for Sustainable Agriculture: Contributions and Challenges},
	author = {Hank, Tobias B. and Berger, Katja and Bach, Heike and Clevers, Jan G. P. W. and Gitelson, Anatoly and Zarco-Tejada, Pablo and Mauser, Wolfram},
	year = {2018},
	month = {07},
	date = {2018-07-26},
	journal = {Surveys in Geophysics},
	pages = {515--551},
	volume = {40},
	number = {3},
	doi = {10.1007/s10712-018-9492-0},
	url = {http://dx.doi.org/10.1007/s10712-018-9492-0},
	langid = {en}
}

@article{lowe2017,
	title = {Hyperspectral image analysis techniques for the detection and classification of the early onset of plant disease and stress},
	author = {Lowe, Amy and Harrison, Nicola and French, Andrew P},
	year = {2017},
	month = {10},
	date = {2017-10-10},
	journal = {Plant Methods},
	volume = {13},
	number = {1},
	doi = {10.1186/s13007-017-0233-z},
	url = {http://dx.doi.org/10.1186/s13007-017-0233-z},
	langid = {en}
}

@inbook{delponte2024,
	title = {Plant disease quantification},
	author = {Del Ponte, Emerson M. and Mahlein, Anne-Katrin and Bock, Clive H.},
	year = {2024},
	date = {2024},
	publisher = {Elsevier},
	pages = {211--225},
	doi = {10.1016/b978-0-12-822429-8.00006-6},
	url = {http://dx.doi.org/10.1016/b978-0-12-822429-8.00006-6},
	langid = {en}
}

@article{oerke2020,
	title = {Remote Sensing of Diseases},
	author = {Oerke, Erich-Christian},
	year = {2020},
	month = {08},
	date = {2020-08-25},
	journal = {Annual Review of Phytopathology},
	pages = {225--252},
	volume = {58},
	number = {1},
	doi = {10.1146/annurev-phyto-010820-012832},
	url = {http://dx.doi.org/10.1146/annurev-phyto-010820-012832},
	langid = {en}
}

@article{kouadio2023,
	title = {A Review on UAV-Based Applications for Plant Disease Detection and Monitoring},
	author = {Kouadio, Louis and El Jarroudi, Moussa and Belabess, Zineb and Laasli, Salah-Eddine and Roni, Md Zohurul Kadir and Amine, Ibn Dahou Idrissi and Mokhtari, Nourreddine and Mokrini, Fouad and Junk, {Jürgen} and Lahlali, Rachid},
	year = {2023},
	month = {08},
	date = {2023-08-31},
	journal = {Remote Sensing},
	pages = {4273},
	volume = {15},
	number = {17},
	doi = {10.3390/rs15174273},
	url = {http://dx.doi.org/10.3390/rs15174273},
	langid = {en}
}

@article{pegg2019,
	title = {The Epidemiology of Fusarium Wilt of Banana},
	author = {Pegg, Kenneth G. and Coates, Lindel M. and {O{\textquoteright}Neill}, Wayne T. and Turner, David W.},
	year = {2019},
	month = {12},
	date = {2019-12-20},
	journal = {Frontiers in Plant Science},
	volume = {10},
	doi = {10.3389/fpls.2019.01395},
	url = {http://dx.doi.org/10.3389/fpls.2019.01395}
}

@article{ye2020,
	title = {Recognition of Banana Fusarium Wilt Based on UAV Remote Sensing},
	author = {Ye, Huichun and Huang, Wenjiang and Huang, Shanyu and Cui, Bei and Dong, Yingying and Guo, Anting and Ren, Yu and Jin, Yu},
	year = {2020},
	month = {03},
	date = {2020-03-13},
	journal = {Remote Sensing},
	pages = {938},
	volume = {12},
	number = {6},
	doi = {10.3390/rs12060938},
	url = {http://dx.doi.org/10.3390/rs12060938},
	langid = {en}
}

@misc{HuichunYE2023,
	title = {A dataset of UAV multispectral images for banana Fusarium wilt survey},
	author = {{Huichun YE} and {Senzheng CHEN} and {Anting GUO} and {Chaojia NIE} and {Jingjing WANG}},
	year = {2022},
	month = {12},
	date = {2022-12-30},
	publisher = {Science Data Bank},
	doi = {10.57760/SCIENCEDB.07000},
	url = {https://www.scidb.cn/en/detail?dataSetId=8d77781a1d754db4b8842708a69c2c22},
	langid = {zh}
}

@article{skaracis2010,
	title = {Cercospora Leaf Spot Disease of Sugar Beet},
	author = {Skaracis, George N. and Pavli, Ourania I. and Biancardi, Enrico},
	year = {2010},
	month = {12},
	date = {2010-12},
	journal = {Sugar Tech},
	pages = {220--228},
	volume = {12},
	number = {3-4},
	doi = {10.1007/s12355-010-0055-z},
	url = {http://dx.doi.org/10.1007/s12355-010-0055-z},
	langid = {en}
}

@article{tan2023,
	title = {Cercospora leaf spot disease of sugar beet},
	author = {Tan, Wenbo and Li, Kexuan and Liu, Dali and Xing, Wang},
	year = {2023},
	month = {05},
	date = {2023-05-20},
	journal = {Plant Signaling & Behavior},
	volume = {18},
	number = {1},
	doi = {10.1080/15592324.2023.2214765},
	url = {http://dx.doi.org/10.1080/15592324.2023.2214765},
	langid = {en}
}

@misc{Saif2024,
	title = {Data for: Estimation of Cercospora Leaf Spot Disease Severity in Table Beets from UAS Multispectral Images},
	author = {Saif, Mohammad Shahriar and Chancia, Robert and Sharma, Pratibha and Murphy, Sean and Raqueno, Nina and Bauch, Timothy and Pethybridge, Sarah and van Aardt, Jan},
	year = {2024},
	month = {08},
	date = {2024-08-13},
	publisher = {Mendeley Data},
	doi = {10.17632/V9B7RWRWX9.1},
	url = {https://data.mendeley.com/datasets/v9b7rwrwx9/1}
}

@article{saif2023,
	title = {Forecasting Table Beet Root Yield Using Spectral and Textural Features from Hyperspectral UAS Imagery},
	author = {Saif, Mohammad S. and Chancia, Robert and Pethybridge, Sarah and Murphy, Sean P. and Hassanzadeh, Amirhossein and van Aardt, Jan},
	year = {2023},
	month = {01},
	date = {2023-01-31},
	journal = {Remote Sensing},
	pages = {794},
	volume = {15},
	number = {3},
	doi = {10.3390/rs15030794},
	url = {http://dx.doi.org/10.3390/rs15030794},
	langid = {en}
}

@article{delponte2019,
	title = {Evaluation of App-Embedded Disease Scales for Aiding Visual Severity Estimation of Cercospora Leaf Spot of Table Beet},
	author = {Del Ponte, Emerson M. and Nelson, Scot C. and Pethybridge, Sarah J.},
	year = {2019},
	month = {06},
	date = {2019-06},
	journal = {Plant Disease},
	pages = {1347--1356},
	volume = {103},
	number = {6},
	doi = {10.1094/pdis-10-18-1718-re},
	url = {http://dx.doi.org/10.1094/pdis-10-18-1718-re},
	langid = {en}
}

@article{dewolf2007,
	title = {Disease Cycle Approach to Plant Disease Prediction},
	author = {De Wolf, Erick D. and Isard, Scott A.},
	year = {2007},
	month = {09},
	date = {2007-09-08},
	journal = {Annual Review of Phytopathology},
	pages = {203--220},
	volume = {45},
	number = {1},
	doi = {10.1146/annurev.phyto.44.070505.143329},
	url = {http://dx.doi.org/10.1146/annurev.phyto.44.070505.143329},
	langid = {en}
}

@article{fedele2022a,
	title = {A Systematic Map of the Research on Disease Modelling for Agricultural Crops Worldwide},
	author = {Fedele, Giorgia and Brischetto, Chiara and Rossi, Vittorio and Gonzalez-Dominguez, Elisa},
	year = {2022},
	month = {03},
	date = {2022-03-09},
	journal = {Plants},
	pages = {724},
	volume = {11},
	number = {6},
	doi = {10.3390/plants11060724},
	url = {http://dx.doi.org/10.3390/plants11060724},
	langid = {en}
}

@article{savary2018,
	title = {Concepts, approaches, and avenues for modelling crop health and crop losses},
	author = {Savary, Serge and Nelson, Andrew D. and Djurle, Annika and Esker, Paul D. and Sparks, Adam and Amorim, Lilian and Bergamin Filho, Armando and Caffi, Tito and Castilla, Nancy and Garrett, Karen and McRoberts, Neil and Rossi, Vittorio and Yuen, Jonathan and Willocquet, Laetitia},
	year = {2018},
	month = {10},
	date = {2018-10},
	journal = {European Journal of Agronomy},
	pages = {4--18},
	volume = {100},
	doi = {10.1016/j.eja.2018.04.003},
	url = {http://dx.doi.org/10.1016/j.eja.2018.04.003},
	langid = {en}
}

@inbook{rossi2010a,
	title = {Modelling Plant Diseases for Decision Making in Crop Protection},
	author = {Rossi, Vittorio and {Giosuè}, Simona and Caffi, Tito},
	year = {2010},
	date = {2010},
	publisher = {Springer Netherlands},
	pages = {241--258},
	doi = {10.1007/978-90-481-9277-9_15},
	url = {http://dx.doi.org/10.1007/978-90-481-9277-9_15},
	langid = {en}
}

@article{rossi2008,
	title = {A mechanistic model simulating primary infections of downy mildew in grapevine},
	author = {Rossi, Vittorio and Caffi, Tito and {Giosuè}, Simona and Bugiani, Riccardo},
	year = {2008},
	month = {04},
	date = {2008-04},
	journal = {Ecological Modelling},
	pages = {480--491},
	volume = {212},
	number = {3-4},
	doi = {10.1016/j.ecolmodel.2007.10.046},
	url = {http://dx.doi.org/10.1016/j.ecolmodel.2007.10.046},
	langid = {en}
}

@article{magarey2005,
	title = {A Simple Generic Infection Model for Foliar Fungal Plant Pathogens},
	author = {Magarey, R. D. and Sutton, T. B. and Thayer, C. L.},
	year = {2005},
	month = {01},
	date = {2005-01},
	journal = {Phytopathology®},
	pages = {92--100},
	volume = {95},
	number = {1},
	doi = {10.1094/phyto-95-0092},
	url = {http://dx.doi.org/10.1094/phyto-95-0092},
	langid = {en}
}

@article{machardy1989,
	title = {A Revision of Mills's Criteria for Predicting Apple Scab Infection Periods},
	author = {MacHardy, William E.},
	year = {1989},
	date = {1989},
	journal = {Phytopathology},
	pages = {304},
	volume = {79},
	number = {3},
	doi = {10.1094/phyto-79-304},
	url = {http://dx.doi.org/10.1094/phyto-79-304}
}

@inbook{hau1990,
	title = {Mathematics and Statistics for Analyses in Epidemiology},
	author = {Hau, B. and Kranz, J.},
	year = {1990},
	date = {1990},
	publisher = {Springer Berlin Heidelberg},
	pages = {12--52},
	doi = {10.1007/978-3-642-75398-5_2},
	url = {http://dx.doi.org/10.1007/978-3-642-75398-5_2}
}

@inbook{rotem1988,
	title = {Techniques of Controlled-Condition Experiments},
	author = {Rotem, Joseph},
	year = {1988},
	date = {1988},
	publisher = {Springer Berlin Heidelberg},
	pages = {19--31},
	doi = {10.1007/978-3-642-95534-1_3},
	url = {http://dx.doi.org/10.1007/978-3-642-95534-1_3},
	langid = {en}
}

@article{dallapria2006,
	title = {Effect of temperature and leaf wetness duration on infection of sweet oranges by Asiatic citrus canker},
	author = {Dalla Pria, M. and Christiano, R. C. S. and Furtado, E. L. and Amorim, L. and Bergamin Filho, A.},
	year = {2006},
	month = {07},
	date = {2006-07-17},
	journal = {Plant Pathology},
	pages = {657--663},
	volume = {55},
	number = {5},
	doi = {10.1111/j.1365-3059.2006.01393.x},
	url = {http://dx.doi.org/10.1111/j.1365-3059.2006.01393.x},
	langid = {en}
}

@article{ji2023a,
	title = {Temperature-Dependent Growth and Spore Germination of Fungi Causing Grapevine Trunk Diseases: Quantitative Analysis of Literature Data},
	author = {Ji, Tao and Salotti, Irene and Altieri, Valeria and Li, Ming and Rossi, Vittorio},
	year = {2023},
	month = {05},
	date = {2023-05-01},
	journal = {Plant Disease},
	pages = {1386--1398},
	volume = {107},
	number = {5},
	doi = {10.1094/pdis-09-22-2249-re},
	url = {http://dx.doi.org/10.1094/PDIS-09-22-2249-RE},
	langid = {en}
}

@article{analytis1977,
	title = {Über die Relation zwischen biologischer Entwicklung und Temperatur bei phytopathogenen Pilzen},
	author = {Analytis, S.},
	year = {1977},
	month = {09},
	date = {1977-09},
	journal = {Journal of Phytopathology},
	pages = {64--76},
	volume = {90},
	number = {1},
	doi = {10.1111/j.1439-0434.1977.tb02886.x},
	url = {http://dx.doi.org/10.1111/j.1439-0434.1977.tb02886.x},
	langid = {en}
}

@article{ji2021,
	title = {Effects of Temperature and Wetness Duration on Infection by Coniella diplodiella, the Fungus Causing White Rot of Grape Berries},
	author = {Ji, Tao and Languasco, Luca and Li, Ming and Rossi, Vittorio},
	year = {2021},
	month = {08},
	date = {2021-08-18},
	journal = {Plants},
	pages = {1696},
	volume = {10},
	number = {8},
	doi = {10.3390/plants10081696},
	url = {http://dx.doi.org/10.3390/plants10081696},
	langid = {en}
}

@inbook{magarey2007,
	title = {How to Create and Deploy Infection Models for Plant Pathogens},
	author = {Magarey, R. D. and Sutton, T. B.},
	year = {2007},
	date = {2007},
	publisher = {Springer Netherlands},
	pages = {3--25},
	doi = {10.1007/978-1-4020-6061-8_1},
	url = {http://dx.doi.org/10.1007/978-1-4020-6061-8_1},
	langid = {en}
}

@article{bailey1999,
	title = {Integrated Method of Organizing, Computing, and Deploying Weather-Based Disease Advisories for Selected Peanut Disease},
	author = {Bailey, J. E.},
	year = {1999},
	month = {01},
	date = {1999-01-01},
	journal = {Peanut Science},
	pages = {74--80},
	volume = {26},
	number = {2},
	doi = {10.3146/i0095-3679-26-2-3},
	url = {http://dx.doi.org/10.3146/i0095-3679-26-2-3},
	langid = {en}
}

@article{seem1984,
	title = {Simple Decision Aids for Practical Control of Pests},
	author = {Seem, Robert C.},
	year = {1984},
	date = {1984},
	journal = {Plant Disease},
	pages = {656},
	volume = {68},
	number = {8},
	doi = {10.1094/pd-69-656},
	url = {http://dx.doi.org/10.1094/pd-69-656}
}

@article{magarey2002,
	title = {Decision Support Systems: Quenching the Thirst},
	author = {Magarey, R. D. and Travis, J. W. and Russo, J. M. and Seem, R. C. and Magarey, P. A.},
	year = {2002},
	month = {01},
	date = {2002-01},
	journal = {Plant Disease},
	pages = {4--14},
	volume = {86},
	number = {1},
	doi = {10.1094/pdis.2002.86.1.4},
	url = {http://dx.doi.org/10.1094/pdis.2002.86.1.4},
	langid = {en}
}

@article{mills1944,
  author = {Mills, W. D.},
  title = {Efficient use of sulfur dusts and sprays during rain to control apple scab},
  journal = {Cornell Extension Bulletin},
  year = {1944},
  volume = {630}
}
@article{windels1998,
	title = {A Cerospora Leaf Spot Model for Sugar Beet: In Practice by an Industry},
	author = {Windels, Carol E. and Lamey, H. Arthur and Hilde, Dave and Widner, Jim and Knudsen, Tom},
	year = {1998},
	month = {07},
	date = {1998-07},
	journal = {Plant Disease},
	pages = {716--726},
	volume = {82},
	number = {7},
	doi = {10.1094/pdis.1998.82.7.716},
	url = {http://dx.doi.org/10.1094/PDIS.1998.82.7.716},
	langid = {en}
}

@article{evans1992,
	title = {A Model Based on Temperature and Leaf Wetness Duration for Establishment of Alternaria Leaf Blight of Muskmelon},
	author = {Evans, K. J.},
	year = {1992},
	date = {1992},
	journal = {Phytopathology},
	pages = {890},
	volume = {82},
	number = {8},
	doi = {10.1094/phyto-82-890},
	url = {http://dx.doi.org/10.1094/phyto-82-890}
}

@article{bulger1987,
	title = {Influence of Temperature and Wetness Duration on Infection of Strawberry Flowers by{\emph{Botrytis cinerea}}and Disease Incidence of Fruit Originating from Infected Flowers},
	author = {Bulger, M. A.},
	year = {1987},
	date = {1987},
	journal = {Phytopathology},
	pages = {1225},
	volume = {77},
	number = {8},
	doi = {10.1094/phyto-77-1225},
	url = {http://dx.doi.org/10.1094/phyto-77-1225}
}

@article{duthie1997,
	title = {Models of the Response of Foliar Parasites to the Combined Effects of Temperature and Duration of Wetness},
	author = {Duthie, James A.},
	year = {1997},
	month = {11},
	date = {1997-11},
	journal = {Phytopathology®},
	pages = {1088--1095},
	volume = {87},
	number = {11},
	doi = {10.1094/phyto.1997.87.11.1088},
	url = {http://dx.doi.org/10.1094/phyto.1997.87.11.1088},
	langid = {en}
}

@article{pfender2003,
	title = {Prediction of Stem Rust Infection Favorability, by Means of Degree-Hour Wetness Duration, for Perennial Ryegrass Seed Crops},
	author = {Pfender, W. F.},
	year = {2003},
	month = {04},
	date = {2003-04},
	journal = {Phytopathology®},
	pages = {467--477},
	volume = {93},
	number = {4},
	doi = {10.1094/phyto.2003.93.4.467},
	url = {http://dx.doi.org/10.1094/phyto.2003.93.4.467},
	langid = {en}
}

@article{lannou2012,
	title = {Variation and Selection of Quantitative Traits in Plant Pathogens},
	author = {Lannou, Christian},
	year = {2012},
	month = {09},
	date = {2012-09-08},
	journal = {Annual Review of Phytopathology},
	pages = {319--338},
	volume = {50},
	number = {1},
	doi = {10.1146/annurev-phyto-081211-173031},
	url = {http://dx.doi.org/10.1146/annurev-phyto-081211-173031},
	langid = {en}
}

@article{xu2000,
	title = {Effects of temperature on the incubation and latent periods of hawthorn powdery mildew ({\emph{Podosphaera clandestina}})},
	author = {Xu, {X{-}M.} and Robinson, J. D.},
	year = {2000},
	month = {12},
	date = {2000-12},
	journal = {Plant Pathology},
	pages = {791--797},
	volume = {49},
	number = {6},
	doi = {10.1046/j.1365-3059.2000.00520.x},
	url = {http://dx.doi.org/10.1046/j.1365-3059.2000.00520.x},
	langid = {en}
}

@article{bernard2013,
	title = {The development of a foliar fungal pathogen does react to leaf temperature!},
	author = {Bernard, {Frédéric} and Sache, Ivan and Suffert, {Frédéric} and Chelle, {Michaël}},
	year = {2013},
	month = {02},
	date = {2013-02-04},
	journal = {New Phytologist},
	pages = {232--240},
	volume = {198},
	number = {1},
	doi = {10.1111/nph.12134},
	url = {http://dx.doi.org/10.1111/nph.12134},
	langid = {en}
}

@article{shah2019,
	title = {Predicting plant disease epidemics from functionally represented weather series},
	author = {Shah, D. A. and Paul, P. A. and De Wolf, E. D. and Madden, L. V.},
	year = {2019},
	month = {05},
	date = {2019-05-06},
	journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
	pages = {20180273},
	volume = {374},
	number = {1775},
	doi = {10.1098/rstb.2018.0273},
	url = {http://dx.doi.org/10.1098/rstb.2018.0273},
	langid = {en}
}

@article{pietravalle2003,
	title = {Modeling of Relationships Between Weather and {\emph{Septoria tritici}} Epidemics on Winter Wheat: A Critical Approach},
	author = {Pietravalle, S. and Shaw, M. W. and Parker, S. R. and van den Bosch, F.},
	year = {2003},
	month = {10},
	date = {2003-10},
	journal = {Phytopathology®},
	pages = {1329--1339},
	volume = {93},
	number = {10},
	doi = {10.1094/phyto.2003.93.10.1329},
	url = {http://dx.doi.org/10.1094/phyto.2003.93.10.1329},
	langid = {en}
}

@article{eljarroudi2017,
	title = {A Threshold-Based Weather Model for Predicting Stripe Rust Infection in Winter Wheat},
	author = {El Jarroudi, Moussa and Kouadio, Louis and Bock, Clive H. and El Jarroudi, Mustapha and Junk, {Jürgen} and Pasquali, Matias and Maraite, Henri and Delfosse, Philippe},
	year = {2017},
	month = {05},
	date = {2017-05},
	journal = {Plant Disease},
	pages = {693--703},
	volume = {101},
	number = {5},
	doi = {10.1094/pdis-12-16-1766-re},
	url = {http://dx.doi.org/10.1094/pdis-12-16-1766-re},
	langid = {en}
}

@article{coakley1988,
	title = {Quantifying how climatic factors affect variation in plant disease severity: A general method using a new way to analyze meteorological data},
	author = {Coakley, Stella Melugin and McDaniel, Larry R. and Line, Roland F.},
	year = {1988},
	month = {02},
	date = {1988-02},
	journal = {Climatic Change},
	pages = {57--75},
	volume = {12},
	number = {1},
	doi = {10.1007/bf00140264},
	url = {http://dx.doi.org/10.1007/bf00140264},
	langid = {en}
}

@article{coakley1988a,
	title = {Predicting Stripe Rust Severity on Winter Wheat Using an Improved Method for Analyzing Meteorological and Rust Data},
	author = {Coakley, Stella Melugin},
	year = {1988},
	date = {1988},
	journal = {Phytopathology},
	pages = {543},
	volume = {78},
	number = {5},
	doi = {10.1094/phyto-78-543},
	url = {http://dx.doi.org/10.1094/Phyto-78-543}
}

@article{shah2013,
	title = {Predicting Fusarium Head Blight Epidemics With Weather-Driven Pre- and Post-Anthesis Logistic Regression Models},
	author = {Shah, D. A. and Molineros, J. E. and Paul, P. A. and Willyerd, K. T. and Madden, L. V. and De Wolf, E. D.},
	year = {2013},
	month = {09},
	date = {2013-09},
	journal = {Phytopathology®},
	pages = {906--919},
	volume = {103},
	number = {9},
	doi = {10.1094/phyto-11-12-0304-r},
	url = {http://dx.doi.org/10.1094/PHYTO-11-12-0304-R},
	langid = {en}
}

@article{cao2015,
	title = {Development of Weather- and Airborne Inoculum-Based Models to Describe Disease Severity of Wheat Powdery Mildew},
	author = {Cao, Xueren and Yao, Dongming and Xu, Xiangming and Zhou, Yilin and Ding, Kejian and Duan, Xiayu and Fan, Jieru and Luo, Yong},
	year = {2015},
	month = {03},
	date = {2015-03},
	journal = {Plant Disease},
	pages = {395--400},
	volume = {99},
	number = {3},
	doi = {10.1094/pdis-02-14-0201-re},
	url = {http://dx.doi.org/10.1094/PDIS-02-14-0201-RE},
	langid = {en}
}

@article{mehra2016,
	title = {Predicting Pre-planting Risk of Stagonospora nodorum blotch in Winter Wheat Using Machine Learning Models},
	author = {Mehra, Lucky K. and Cowger, Christina and Gross, Kevin and Ojiambo, Peter S.},
	year = {2016},
	month = {03},
	date = {2016-03-30},
	journal = {Frontiers in Plant Science},
	volume = {7},
	doi = {10.3389/fpls.2016.00390},
	url = {http://dx.doi.org/10.3389/fpls.2016.00390}
}

@article{paul2004,
	title = {A Model-Based Approach to Preplanting Risk Assessment for Gray Leaf Spot of Maize},
	author = {Paul, P. A. and Munkvold, G. P.},
	year = {2004},
	month = {12},
	date = {2004-12},
	journal = {Phytopathology®},
	pages = {1350--1357},
	volume = {94},
	number = {12},
	doi = {10.1094/phyto.2004.94.12.1350},
	url = {http://dx.doi.org/10.1094/PHYTO.2004.94.12.1350},
	langid = {en}
}

@article{decól2024,
	title = {Weather-Based Logistic Regression Models for Predicting Wheat Head Blast Epidemics},
	author = {{De Cól}, Monalisa and Coelho, Mauricio and Del Ponte, Emerson M.},
	year = {2024},
	month = {07},
	date = {2024-07-01},
	journal = {Plant Disease},
	pages = {2206--2213},
	volume = {108},
	number = {7},
	doi = {10.1094/pdis-11-23-2513-re},
	url = {http://dx.doi.org/10.1094/PDIS-11-23-2513-RE},
	langid = {en}
}

@article{mehra2017,
	title = {A Model for Predicting Onset of Stagonospora nodorum Blotch in Winter Wheat Based on Preplanting and Weather Factors},
	author = {Mehra, L. K. and Cowger, C. and Ojiambo, P. S.},
	year = {2017},
	month = {06},
	date = {2017-06},
	journal = {Phytopathology®},
	pages = {635--644},
	volume = {107},
	number = {6},
	doi = {10.1094/phyto-03-16-0133-r},
	url = {http://dx.doi.org/10.1094/phyto-03-16-0133-r},
	langid = {en}
}

@article{gouache2015a,
	title = {A novel solution to the variable selection problem in Window Pane approaches of plant pathogen {\textendash} Climate models: Development, evaluation and application of a climatological model for brown rust of wheat},
	author = {Gouache, David and {Léon}, Marie Sandrine and Duyme, Florent and Braun, Philippe},
	year = {2015},
	month = {06},
	date = {2015-06},
	journal = {Agricultural and Forest Meteorology},
	pages = {51--59},
	volume = {205},
	doi = {10.1016/j.agrformet.2015.02.013},
	url = {http://dx.doi.org/10.1016/j.agrformet.2015.02.013},
	langid = {en}
}

@article{kriss2010,
	title = {Relationship Between Yearly Fluctuations in Fusarium Head Blight Intensity and Environmental Variables: A Window-Pane Analysis},
	author = {Kriss, A. B. and Paul, P. A. and Madden, L. V.},
	year = {2010},
	month = {08},
	date = {2010-08},
	journal = {Phytopathology®},
	pages = {784--797},
	volume = {100},
	number = {8},
	doi = {10.1094/phyto-100-8-0784},
	url = {http://dx.doi.org/10.1094/PHYTO-100-8-0784},
	langid = {en}
}

@article{coakley1985,
	title = {Model for Predicting Severity of Septoria tritici Blotch on Winter Wheat},
	author = {Coakley, Stella Melugin},
	year = {1985},
	date = {1985},
	journal = {Phytopathology},
	pages = {1245},
	volume = {75},
	number = {11},
	doi = {10.1094/phyto-75-1245},
	url = {http://dx.doi.org/10.1094/phyto-75-1245}
}

@article{calverojr1996,
	title = {Development of empirical forecasting models for rice blast based on weather factors},
	author = {Calvero Jr, S. B. and Coakley, S. M. and Teng, P. S.},
	year = {1996},
	month = {08},
	date = {1996-08},
	journal = {Plant Pathology},
	pages = {667--678},
	volume = {45},
	number = {4},
	doi = {10.1046/j.1365-3059.1996.d01-168.x},
	url = {http://dx.doi.org/10.1046/j.1365-3059.1996.d01-168.x},
	langid = {en}
}

@article{tebeest2008a,
	title = {Disease{\textendash}Weather Relationships for Powdery Mildew and Yellow Rust on Winter Wheat},
	author = {Te Beest, D. E. and Paveley, N. D. and Shaw, M. W. and van den Bosch, F.},
	year = {2008},
	month = {05},
	date = {2008-05},
	journal = {Phytopathology®},
	pages = {609--617},
	volume = {98},
	number = {5},
	doi = {10.1094/phyto-98-5-0609},
	url = {http://dx.doi.org/10.1094/PHYTO-98-5-0609},
	langid = {en}
}

@article{dallalana2021,
	title = {Natural Occurrence of Maize Gibberella Ear Rot and Contamination of Grain with Mycotoxins in Association with Weather Variables},
	author = {Dalla Lana, F. and Madden, L. V. and Paul, P. A.},
	year = {2021},
	month = {01},
	date = {2021-01},
	journal = {Plant Disease},
	pages = {114--126},
	volume = {105},
	number = {1},
	doi = {10.1094/pdis-05-20-0952-re},
	url = {http://dx.doi.org/10.1094/PDIS-05-20-0952-RE},
	langid = {en}
}

@article{shah2019a,
	title = {Functional Data Analysis of Weather Variables Linked to Fusarium Head Blight Epidemics in the United States},
	author = {Shah, D. A. and De Wolf, E. D. and Paul, P. A. and Madden, L. V.},
	year = {2019},
	month = {01},
	date = {2019-01},
	journal = {Phytopathology®},
	pages = {96--110},
	volume = {109},
	number = {1},
	doi = {10.1094/phyto-11-17-0386-r},
	url = {http://dx.doi.org/10.1094/PHYTO-11-17-0386-R},
	langid = {en}
}

@article{hjelkrem2021a,
	title = {Weather Patterns Associated with DON Levels in Norwegian Spring Oat Grain: A Functional Data Approach},
	author = {Hjelkrem, Anne-Grete Roer and Aamot, Heidi Udnes and Lillemo, Morten and {Sørensen}, Espen Sannes and Brodal, Guro and Russenes, Aina Lundon and Edwards, Simon G. and Hofgaard, Ingerd Skow},
	year = {2021},
	month = {12},
	date = {2021-12-27},
	journal = {Plants},
	pages = {73},
	volume = {11},
	number = {1},
	doi = {10.3390/plants11010073},
	url = {http://dx.doi.org/10.3390/plants11010073},
	langid = {en}
}

@article{Gertheiss2024,
	title = {Functional Data Analysis: An Introduction and Recent Developments},
	author = {Gertheiss, Jan and {Rügamer}, David and Liew, Bernard X. W. and Greven, Sonja},
	year = {2024},
	month = {09},
	date = {2024-09-27},
	journal = {Biometrical Journal},
	volume = {66},
	number = {7},
	doi = {10.1002/bimj.202300363},
	url = {http://dx.doi.org/10.1002/bimj.202300363},
	langid = {en}
}

@article{alves2022,
	title = {Research Compendium: From reanalysis data to inference: a framework for linking environment to plant disease epidemics at the regional scale},
	author = {Alves, Kaique and Shah, Denis and Dillard, Helene. and Del Ponte, Emerson and Pethybridge, Sarah},
	year = {2022},
	month = {08},
	date = {2022-08-03},
	journal = {Open Science Framework},
	doi = {10.17605/OSF.IO/V53PY},
	url = {https://osf.io/v53py/}
}

@misc{alves2022a,
	title = {From reanalysis data to inference: a framework for linking environment to plant disease epidemics at the regional scale},
	author = {Alves, Kaique Santos and Shah, Denis A. and Dillard, Helene R. and Del Ponte, Emerson Medeiros and Pethybridge, Sarah J.},
	year = {2022},
	month = {08},
	date = {2022-08-22},
	url = {http://dx.doi.org/10.31219/osf.io/9tgau}
}

@article{pini2016,
	title = {The Interval Testing Procedure: A General Framework for Inference in Functional Data Analysis},
	author = {Pini, Alessia and Vantini, Simone},
	year = {2016},
	month = {01},
	date = {2016-01-26},
	journal = {Biometrics},
	pages = {835--845},
	volume = {72},
	number = {3},
	doi = {10.1111/biom.12476},
	url = {http://dx.doi.org/10.1111/biom.12476},
	langid = {en}
}

@article{harikrishnan2008,
	title = {A Logistic Regression Model for Predicting Risk of White Mold Incidence on Dry Bean in North Dakota},
	author = {Harikrishnan, R. and {Río}, L. E. del},
	year = {2008},
	month = {01},
	date = {2008-01},
	journal = {Plant Disease},
	pages = {42--46},
	volume = {92},
	number = {1},
	doi = {10.1094/pdis-92-1-0042},
	url = {http://dx.doi.org/10.1094/pdis-92-1-0042},
	langid = {en}
}

@article{mila2004,
	title = {Logistic Regression Modeling of Prevalence of Soybean Sclerotinia Stem Rot in the North-Central Region of the United States},
	author = {Mila, A. L. and Carriquiry, A. L. and Yang, X. B.},
	year = {2004},
	month = {01},
	date = {2004-01},
	journal = {Phytopathology®},
	pages = {102--110},
	volume = {94},
	number = {1},
	doi = {10.1094/phyto.2004.94.1.102},
	url = {http://dx.doi.org/10.1094/phyto.2004.94.1.102},
	langid = {en}
}

@article{romero2021,
	title = {Logistic models to predict olive anthracnose under field conditions},
	author = {Romero, {Joaquín} and Moral, Juan and Gonzalez-Dominguez, Elisa and {Agustí-Brisach}, Carlos and Roca, Luis F. and Rossi, Vittorio and Trapero, Antonio},
	year = {2021},
	month = {10},
	date = {2021-10},
	journal = {Crop Protection},
	pages = {105714},
	volume = {148},
	doi = {10.1016/j.cropro.2021.105714},
	url = {http://dx.doi.org/10.1016/j.cropro.2021.105714},
	langid = {en}
}

@article{xu2013,
	title = {Developing logistic models to relate the accumulation of DON associated with Fusarium head blight to climatic conditions in Europe},
	author = {Xu, Xiangming and Madden, Laurence V. and Edwards, Simon G. and Doohan, Fiona M. and Moretti, Antonio and Hornok, L. and Nicholson, P. and Ritieni, A.},
	year = {2013},
	month = {09},
	date = {2013-09-03},
	journal = {European Journal of Plant Pathology},
	pages = {689--706},
	volume = {137},
	number = {4},
	doi = {10.1007/s10658-013-0280-x},
	url = {http://dx.doi.org/10.1007/s10658-013-0280-x},
	langid = {en}
}

@article{dallalana2021a,
	title = {Logistic Models Derived via LASSO Methods for Quantifying the Risk of Natural Contamination of Maize Grain with Deoxynivalenol},
	author = {Dalla Lana, Felipe and Madden, Laurence V. and Paul, Pierce A.},
	year = {2021},
	month = {12},
	date = {2021-12},
	journal = {Phytopathology®},
	pages = {2250--2267},
	volume = {111},
	number = {12},
	doi = {10.1094/phyto-03-21-0104-r},
	url = {http://dx.doi.org/10.1094/PHYTO-03-21-0104-R},
	langid = {en}
}

@article{dewolf2023,
	title = {Early Season Environmental Indicators of Wheat Stripe Rust Epidemics in Kansas and the Central Great Plains Region of the United States},
	author = {De Wolf, Erick D. and Andersen Onofre, Kelsey F. and Lollato, Romulo P.},
	year = {2023},
	month = {07},
	date = {2023-07-01},
	journal = {Plant Disease},
	pages = {2119--2125},
	volume = {107},
	number = {7},
	doi = {10.1094/pdis-08-22-1873-re},
	url = {http://dx.doi.org/10.1094/PDIS-08-22-1873-RE},
	langid = {en}
}

@book{hastie2009,
	title = {The Elements of Statistical Learning},
	author = {Hastie, Trevor and Tibshirani, Robert and Friedman, Jerome},
	year = {2009},
	date = {2009},
	publisher = {Springer New York},
	doi = {10.1007/978-0-387-84858-7},
	url = {http://dx.doi.org/10.1007/978-0-387-84858-7}
}