diff --git a/renv/activate.R b/renv/activate.R
index d13f9932..0eb51088 100644
--- a/renv/activate.R
+++ b/renv/activate.R
@@ -2,7 +2,7 @@
 local({
 
   # the requested version of renv
-  version <- "1.0.7"
+  version <- "1.0.11"
   attr(version, "sha") <- NULL
 
   # the project directory
@@ -98,6 +98,66 @@ local({
     unloadNamespace("renv")
 
   # load bootstrap tools   
+  ansify <- function(text) {
+    if (renv_ansify_enabled())
+      renv_ansify_enhanced(text)
+    else
+      renv_ansify_default(text)
+  }
+  
+  renv_ansify_enabled <- function() {
+  
+    override <- Sys.getenv("RENV_ANSIFY_ENABLED", unset = NA)
+    if (!is.na(override))
+      return(as.logical(override))
+  
+    pane <- Sys.getenv("RSTUDIO_CHILD_PROCESS_PANE", unset = NA)
+    if (identical(pane, "build"))
+      return(FALSE)
+  
+    testthat <- Sys.getenv("TESTTHAT", unset = "false")
+    if (tolower(testthat) %in% "true")
+      return(FALSE)
+  
+    iderun <- Sys.getenv("R_CLI_HAS_HYPERLINK_IDE_RUN", unset = "false")
+    if (tolower(iderun) %in% "false")
+      return(FALSE)
+  
+    TRUE
+  
+  }
+  
+  renv_ansify_default <- function(text) {
+    text
+  }
+  
+  renv_ansify_enhanced <- function(text) {
+  
+    # R help links
+    pattern <- "`\\?(renv::(?:[^`])+)`"
+    replacement <- "`\033]8;;ide:help:\\1\a?\\1\033]8;;\a`"
+    text <- gsub(pattern, replacement, text, perl = TRUE)
+  
+    # runnable code
+    pattern <- "`(renv::(?:[^`])+)`"
+    replacement <- "`\033]8;;ide:run:\\1\a\\1\033]8;;\a`"
+    text <- gsub(pattern, replacement, text, perl = TRUE)
+  
+    # return ansified text
+    text
+  
+  }
+  
+  renv_ansify_init <- function() {
+  
+    envir <- renv_envir_self()
+    if (renv_ansify_enabled())
+      assign("ansify", renv_ansify_enhanced, envir = envir)
+    else
+      assign("ansify", renv_ansify_default, envir = envir)
+  
+  }
+  
   `%||%` <- function(x, y) {
     if (is.null(x)) y else x
   }
@@ -142,7 +202,10 @@ local({
     # compute common indent
     indent <- regexpr("[^[:space:]]", lines)
     common <- min(setdiff(indent, -1L)) - leave
-    paste(substring(lines, common), collapse = "\n")
+    text <- paste(substring(lines, common), collapse = "\n")
+  
+    # substitute in ANSI links for executable renv code
+    ansify(text)
   
   }
   
@@ -305,8 +368,11 @@ local({
       quiet    = TRUE
     )
   
-    if ("headers" %in% names(formals(utils::download.file)))
-      args$headers <- renv_bootstrap_download_custom_headers(url)
+    if ("headers" %in% names(formals(utils::download.file))) {
+      headers <- renv_bootstrap_download_custom_headers(url)
+      if (length(headers) && is.character(headers))
+        args$headers <- headers
+    }
   
     do.call(utils::download.file, args)
   
@@ -385,10 +451,21 @@ local({
     for (type in types) {
       for (repos in renv_bootstrap_repos()) {
   
+        # build arguments for utils::available.packages() call
+        args <- list(type = type, repos = repos)
+  
+        # add custom headers if available -- note that
+        # utils::available.packages() will pass this to download.file()
+        if ("headers" %in% names(formals(utils::download.file))) {
+          headers <- renv_bootstrap_download_custom_headers(repos)
+          if (length(headers) && is.character(headers))
+            args$headers <- headers
+        }
+  
         # retrieve package database
         db <- tryCatch(
           as.data.frame(
-            utils::available.packages(type = type, repos = repos),
+            do.call(utils::available.packages, args),
             stringsAsFactors = FALSE
           ),
           error = identity
@@ -470,6 +547,14 @@ local({
   
   }
   
+  renv_bootstrap_github_token <- function() {
+    for (envvar in c("GITHUB_TOKEN", "GITHUB_PAT", "GH_TOKEN")) {
+      envval <- Sys.getenv(envvar, unset = NA)
+      if (!is.na(envval))
+        return(envval)
+    }
+  }
+  
   renv_bootstrap_download_github <- function(version) {
   
     enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE")
@@ -477,16 +562,16 @@ local({
       return(FALSE)
   
     # prepare download options
-    pat <- Sys.getenv("GITHUB_PAT")
-    if (nzchar(Sys.which("curl")) && nzchar(pat)) {
+    token <- renv_bootstrap_github_token()
+    if (nzchar(Sys.which("curl")) && nzchar(token)) {
       fmt <- "--location --fail --header \"Authorization: token %s\""
-      extra <- sprintf(fmt, pat)
+      extra <- sprintf(fmt, token)
       saved <- options("download.file.method", "download.file.extra")
       options(download.file.method = "curl", download.file.extra = extra)
       on.exit(do.call(base::options, saved), add = TRUE)
-    } else if (nzchar(Sys.which("wget")) && nzchar(pat)) {
+    } else if (nzchar(Sys.which("wget")) && nzchar(token)) {
       fmt <- "--header=\"Authorization: token %s\""
-      extra <- sprintf(fmt, pat)
+      extra <- sprintf(fmt, token)
       saved <- options("download.file.method", "download.file.extra")
       options(download.file.method = "wget", download.file.extra = extra)
       on.exit(do.call(base::options, saved), add = TRUE)
diff --git a/renv/profiles/lesson-requirements/renv.lock b/renv/profiles/lesson-requirements/renv.lock
index 83612b1d..bbc22dd3 100644
--- a/renv/profiles/lesson-requirements/renv.lock
+++ b/renv/profiles/lesson-requirements/renv.lock
@@ -11,10 +11,10 @@
   "Packages": {
     "BH": {
       "Package": "BH",
-      "Version": "1.84.0-0",
+      "Version": "1.87.0-1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "a8235afbcd6316e6e91433ea47661013"
+      "Hash": "468d9a03ba57f22ebde50060fd13ba9f"
     },
     "DBI": {
       "Package": "DBI",
@@ -64,7 +64,7 @@
     },
     "MASS": {
       "Package": "MASS",
-      "Version": "7.3-61",
+      "Version": "7.3-64",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -75,7 +75,7 @@
         "stats",
         "utils"
       ],
-      "Hash": "0cafd6f0500e5deba33be22c46bf6055"
+      "Hash": "49d2d8090b74c1179df1aff16201caf8"
     },
     "Matrix": {
       "Package": "Matrix",
@@ -114,7 +114,7 @@
     },
     "R.oo": {
       "Package": "R.oo",
-      "Version": "1.26.0",
+      "Version": "1.27.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -123,7 +123,7 @@
         "methods",
         "utils"
       ],
-      "Hash": "4fed809e53ddb5407b3da3d0f572e591"
+      "Hash": "6ac79ff194202248cf946fe3a5d6d498"
     },
     "R.utils": {
       "Package": "R.utils",
@@ -186,13 +186,13 @@
     },
     "RcppParallel": {
       "Package": "RcppParallel",
-      "Version": "5.1.7",
+      "Version": "5.1.9",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
-      "Hash": "a45594a00f5dbb073d5ec9f48592a08a"
+      "Hash": "f38a72a419b91faac0ce5d9eee04c120"
     },
     "StanHeaders": {
       "Package": "StanHeaders",
@@ -220,13 +220,13 @@
     },
     "askpass": {
       "Package": "askpass",
-      "Version": "1.2.0",
+      "Version": "1.2.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "sys"
       ],
-      "Hash": "cad6cf7f1d5f6e906700b9d3e718c796"
+      "Hash": "c39f4155b3ceb1a9a2799d700fbd4b6a"
     },
     "backports": {
       "Package": "backports",
@@ -250,13 +250,13 @@
     },
     "bit": {
       "Package": "bit",
-      "Version": "4.5.0",
+      "Version": "4.5.0.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
-      "Hash": "5dc7b2677d65d0e874fc4aaf0e879987"
+      "Hash": "f89f074e0e49bf1dbe3eba0a15a91476"
     },
     "bit64": {
       "Package": "bit64",
@@ -286,7 +286,7 @@
     },
     "broom": {
       "Package": "broom",
-      "Version": "1.0.6",
+      "Version": "1.0.7",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -302,11 +302,11 @@
         "tibble",
         "tidyr"
       ],
-      "Hash": "a4652c36d1f8abfc3ddf4774f768c934"
+      "Hash": "8fcc818f3b9887aebaf206f141437cc9"
     },
     "bslib": {
       "Package": "bslib",
-      "Version": "0.7.0",
+      "Version": "0.8.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -324,7 +324,7 @@
         "rlang",
         "sass"
       ],
-      "Hash": "8644cc53f43828f19133548195d7e59e"
+      "Hash": "b299c6741ca9746fb227debcb0f9fb6c"
     },
     "cachem": {
       "Package": "cachem",
@@ -421,31 +421,6 @@
       ],
       "Hash": "d954cb1c57e8d8b756165d7ba18aa55a"
     },
-    "colourpicker": {
-      "Package": "colourpicker",
-      "Version": "1.3.0",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "ggplot2",
-        "htmltools",
-        "htmlwidgets",
-        "jsonlite",
-        "miniUI",
-        "shiny",
-        "shinyjs",
-        "utils"
-      ],
-      "Hash": "daec8f7d4ba89df06fe2c0802c3a9dac"
-    },
-    "commonmark": {
-      "Package": "commonmark",
-      "Version": "1.9.1",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Hash": "5d8225445acb167abf7797de48b2ee3c"
-    },
     "conflicted": {
       "Package": "conflicted",
       "Version": "1.2.0",
@@ -471,13 +446,13 @@
     },
     "cpp11": {
       "Package": "cpp11",
-      "Version": "0.5.0",
+      "Version": "0.5.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
-      "Hash": "91570bba75d0c9d3f1040c835cee8fba"
+      "Hash": "9df43854f1c84685d095ed6270b52387"
     },
     "crayon": {
       "Package": "crayon",
@@ -506,24 +481,24 @@
     },
     "curl": {
       "Package": "curl",
-      "Version": "5.2.1",
+      "Version": "6.1.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
-      "Hash": "411ca2c03b1ce5f548345d2fc2685f7a"
+      "Hash": "8dd23d308c751efdf675124aad4bf5d7"
     },
     "data.table": {
       "Package": "data.table",
-      "Version": "1.16.2",
+      "Version": "1.16.4",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "methods"
       ],
-      "Hash": "2e00b378fc3be69c865120d9f313039a"
+      "Hash": "38bbf05fc2503143db4c734a7e5cab66"
     },
     "dbplyr": {
       "Package": "dbplyr",
@@ -568,14 +543,14 @@
     },
     "digest": {
       "Package": "digest",
-      "Version": "0.6.35",
+      "Version": "0.6.37",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "utils"
       ],
-      "Hash": "698ece7ba5a4fa4559e3d537e7ec3d31"
+      "Hash": "33698c4b3127fc9f506654607fb73676"
     },
     "distcrete": {
       "Package": "distcrete",
@@ -680,7 +655,6 @@
       "RemoteRepo": "epiparameter",
       "RemoteUsername": "epiverse-trace",
       "RemotePkgRef": "epiverse-trace/epiparameter",
-      "RemoteRef": "HEAD",
       "RemoteSha": "b67cdd31cdc182db8d39b41118aa5e05ed3e496e",
       "Requirements": [
         "R",
@@ -699,14 +673,13 @@
     },
     "evaluate": {
       "Package": "evaluate",
-      "Version": "0.24.0",
+      "Version": "1.0.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
-        "R",
-        "methods"
+        "R"
       ],
-      "Hash": "a1066cbc05caee9a4bf6d90f194ff4da"
+      "Hash": "3fd29944b231036ad67c3edb32e02201"
     },
     "fansi": {
       "Package": "fansi",
@@ -752,7 +725,7 @@
     },
     "fontawesome": {
       "Package": "fontawesome",
-      "Version": "0.5.2",
+      "Version": "0.5.3",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -760,7 +733,7 @@
         "htmltools",
         "rlang"
       ],
-      "Hash": "c2efdd5f0bcd1ea861c2d4e2a883a67d"
+      "Hash": "bd1297f9b5b1fc1372d19e2c4cd82215"
     },
     "forcats": {
       "Package": "forcats",
@@ -790,14 +763,14 @@
     },
     "fs": {
       "Package": "fs",
-      "Version": "1.6.4",
+      "Version": "1.6.5",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "methods"
       ],
-      "Hash": "15aeb8c27f5ea5161f9f6a641fafd93a"
+      "Hash": "7f48af39fa27711ea5fbd183b399920d"
     },
     "futile.logger": {
       "Package": "futile.logger",
@@ -855,27 +828,6 @@
       ],
       "Hash": "15e9634c0fcd294799e9b2e929ed1b86"
     },
-    "ggExtra": {
-      "Package": "ggExtra",
-      "Version": "0.10.1",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "R6",
-        "colourpicker",
-        "ggplot2",
-        "grDevices",
-        "grid",
-        "gtable",
-        "miniUI",
-        "scales",
-        "shiny",
-        "shinyjs",
-        "utils"
-      ],
-      "Hash": "49ec8c1b50cef22596e30ace623bc116"
-    },
     "ggplot2": {
       "Package": "ggplot2",
       "Version": "3.5.1",
@@ -967,14 +919,14 @@
     },
     "grates": {
       "Package": "grates",
-      "Version": "1.2.1",
+      "Version": "1.3.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "utils"
       ],
-      "Hash": "077185d8236bfbb0225d6d7a370bbfae"
+      "Hash": "4bd35d41d06c3beb984ebfddf54a2861"
     },
     "gridExtra": {
       "Package": "gridExtra",
@@ -992,7 +944,7 @@
     },
     "gtable": {
       "Package": "gtable",
-      "Version": "0.3.5",
+      "Version": "0.3.6",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1001,9 +953,10 @@
         "glue",
         "grid",
         "lifecycle",
-        "rlang"
+        "rlang",
+        "stats"
       ],
-      "Hash": "e18861963cbc65a27736e02b3cd3c4a0"
+      "Hash": "de949855009e2d4d0e52a844e30617ae"
     },
     "haven": {
       "Package": "haven",
@@ -1082,21 +1035,6 @@
       ],
       "Hash": "04291cc45198225444a397606810ac37"
     },
-    "httpuv": {
-      "Package": "httpuv",
-      "Version": "1.6.15",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "R6",
-        "Rcpp",
-        "later",
-        "promises",
-        "utils"
-      ],
-      "Hash": "d55aa087c47a63ead0f6fc10f8fa1ee0"
-    },
     "httr": {
       "Package": "httr",
       "Version": "1.4.7",
@@ -1125,7 +1063,7 @@
     },
     "igraph": {
       "Package": "igraph",
-      "Version": "2.0.3",
+      "Version": "2.1.2",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1144,11 +1082,11 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "c3b7d801d722e26e4cd888e042bf9af5"
+      "Hash": "9a93b743b2461ba06ba3b5df12011145"
     },
     "incidence2": {
       "Package": "incidence2",
-      "Version": "2.5.0",
+      "Version": "2.6.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1167,17 +1105,17 @@
         "vctrs",
         "ympes"
       ],
-      "Hash": "4a2838c53aea7d0bdac6a3a0618aaf26"
+      "Hash": "4f5b9d070f9094114bb97cfdce4eb0d8"
     },
     "inline": {
       "Package": "inline",
-      "Version": "0.3.19",
+      "Version": "0.3.20",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "methods"
       ],
-      "Hash": "1deaf1de3eac7e1d3377954b3a283652"
+      "Hash": "e53e635cd18fc8b0d82f2896517ac786"
     },
     "isoband": {
       "Package": "isoband",
@@ -1202,17 +1140,17 @@
     },
     "jsonlite": {
       "Package": "jsonlite",
-      "Version": "1.8.8",
+      "Version": "1.8.9",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Requirements": [
         "methods"
       ],
-      "Hash": "e1b9c55281c5adc4dd113652d9e26768"
+      "Hash": "4e993b65c2c3ffbffce7bb3e2c6f832b"
     },
     "knitr": {
       "Package": "knitr",
-      "Version": "1.48",
+      "Version": "1.49",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1224,7 +1162,7 @@
         "xfun",
         "yaml"
       ],
-      "Hash": "acf380f300c721da9fde7df115a5f86f"
+      "Hash": "9fcb189926d93c636dea94fbe4f44480"
     },
     "labeling": {
       "Package": "labeling",
@@ -1248,22 +1186,11 @@
       ],
       "Hash": "b1e925c4b9ffeb901bacf812cbe9a6ad"
     },
-    "later": {
-      "Package": "later",
-      "Version": "1.3.2",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "Rcpp",
-        "rlang"
-      ],
-      "Hash": "a3e051d405326b8b0012377434c62b37"
-    },
     "lattice": {
       "Package": "lattice",
       "Version": "0.22-6",
       "Source": "Repository",
-      "Repository": "CRAN",
+      "Repository": "RSPM",
       "Requirements": [
         "R",
         "grDevices",
@@ -1314,7 +1241,7 @@
     },
     "lubridate": {
       "Package": "lubridate",
-      "Version": "1.9.3",
+      "Version": "1.9.4",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1323,7 +1250,7 @@
         "methods",
         "timechange"
       ],
-      "Hash": "680ad542fbcf801442c83a6ac5a2126c"
+      "Hash": "be38bc740fc51783a78edb5a157e4104"
     },
     "magrittr": {
       "Package": "magrittr",
@@ -1383,18 +1310,6 @@
       ],
       "Hash": "18e9c28c1d3ca1560ce30658b22ce104"
     },
-    "miniUI": {
-      "Package": "miniUI",
-      "Version": "0.1.1.1",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "htmltools",
-        "shiny",
-        "utils"
-      ],
-      "Hash": "fec5f52652d60615fdb3957b3d74324a"
-    },
     "modelr": {
       "Package": "modelr",
       "Version": "0.1.11",
@@ -1428,7 +1343,7 @@
       "Package": "nlme",
       "Version": "3.1-166",
       "Source": "Repository",
-      "Repository": "CRAN",
+      "Repository": "RSPM",
       "Requirements": [
         "R",
         "graphics",
@@ -1464,13 +1379,13 @@
     },
     "openssl": {
       "Package": "openssl",
-      "Version": "2.2.0",
+      "Version": "2.3.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "askpass"
       ],
-      "Hash": "2bcca3848e4734eb3b16103bc9aa4b8e"
+      "Hash": "5bfe2927efa9f87766ca9605301ea48f"
     },
     "outbreaks": {
       "Package": "outbreaks",
@@ -1503,12 +1418,11 @@
     },
     "pillar": {
       "Package": "pillar",
-      "Version": "1.9.0",
+      "Version": "1.10.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "cli",
-        "fansi",
         "glue",
         "lifecycle",
         "rlang",
@@ -1516,11 +1430,11 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "15da5a8412f317beeee6175fbc76f4bb"
+      "Hash": "101ca350beea21261a15ba169d7a8513"
     },
     "pkgbuild": {
       "Package": "pkgbuild",
-      "Version": "1.4.4",
+      "Version": "1.4.5",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1531,7 +1445,7 @@
         "desc",
         "processx"
       ],
-      "Hash": "a29e8e134a460a01e0ca67a4763c595b"
+      "Hash": "30eaaab94db72652e72e3475c1b55278"
     },
     "pkgconfig": {
       "Package": "pkgconfig",
@@ -1613,32 +1527,16 @@
       ],
       "Hash": "f4625e061cb2865f111b47ff163a5ca6"
     },
-    "promises": {
-      "Package": "promises",
-      "Version": "1.3.0",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R6",
-        "Rcpp",
-        "fastmap",
-        "later",
-        "magrittr",
-        "rlang",
-        "stats"
-      ],
-      "Hash": "434cd5388a3979e74be5c219bcd6e77d"
-    },
     "ps": {
       "Package": "ps",
-      "Version": "1.8.0",
+      "Version": "1.8.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "utils"
       ],
-      "Hash": "4b9c8485b0c7eecdf0a9ba5132a45576"
+      "Hash": "b4404b1de13758dea1c0484ad0d48563"
     },
     "purrr": {
       "Package": "purrr",
@@ -1657,14 +1555,14 @@
     },
     "ragg": {
       "Package": "ragg",
-      "Version": "1.3.2",
+      "Version": "1.3.3",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "systemfonts",
         "textshaping"
       ],
-      "Hash": "e3087db406e079a8a2fd87f413918ed3"
+      "Hash": "0595fe5e47357111f29ad19101c7d271"
     },
     "rappdirs": {
       "Package": "rappdirs",
@@ -1733,13 +1631,13 @@
     },
     "renv": {
       "Package": "renv",
-      "Version": "1.0.7",
+      "Version": "1.0.11",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "utils"
       ],
-      "Hash": "397b7b2a265bc5a7a06852524dabae20"
+      "Hash": "47623f66b4e80b3b0587bc5d7b309888"
     },
     "reprex": {
       "Package": "reprex",
@@ -1836,10 +1734,10 @@
     },
     "rstudioapi": {
       "Package": "rstudioapi",
-      "Version": "0.16.0",
+      "Version": "0.17.1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "96710351d642b70e8f02ddeb237c46a7"
+      "Hash": "5f90cd73946d706cfe26024294236113"
     },
     "runner": {
       "Package": "runner",
@@ -1920,52 +1818,6 @@
       ],
       "Hash": "3838071b66e0c566d55cc26bd6e27bf4"
     },
-    "shiny": {
-      "Package": "shiny",
-      "Version": "1.8.1.1",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "R6",
-        "bslib",
-        "cachem",
-        "commonmark",
-        "crayon",
-        "fastmap",
-        "fontawesome",
-        "glue",
-        "grDevices",
-        "htmltools",
-        "httpuv",
-        "jsonlite",
-        "later",
-        "lifecycle",
-        "methods",
-        "mime",
-        "promises",
-        "rlang",
-        "sourcetools",
-        "tools",
-        "utils",
-        "withr",
-        "xtable"
-      ],
-      "Hash": "54b26646816af9960a4c64d8ceec75d6"
-    },
-    "shinyjs": {
-      "Package": "shinyjs",
-      "Version": "2.1.0",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "digest",
-        "jsonlite",
-        "shiny"
-      ],
-      "Hash": "802e4786b353a4bb27116957558548d5"
-    },
     "socialmixr": {
       "Package": "socialmixr",
       "Version": "0.4.0",
@@ -1987,16 +1839,6 @@
       ],
       "Hash": "24478502db802c8108c503bf726ebf16"
     },
-    "sourcetools": {
-      "Package": "sourcetools",
-      "Version": "0.1.7-1",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R"
-      ],
-      "Hash": "5f5a7629f956619d519205ec475fe647"
-    },
     "stringi": {
       "Package": "stringi",
       "Version": "1.8.4",
@@ -2032,12 +1874,10 @@
       "Version": "0.2.0.9000",
       "Source": "GitHub",
       "RemoteType": "github",
-      "Remotes": "epiverse-trace/epiparameter",
       "RemoteHost": "api.github.com",
       "RemoteRepo": "superspreading",
       "RemoteUsername": "epiverse-trace",
       "RemotePkgRef": "epiverse-trace/superspreading",
-      "RemoteRef": "HEAD",
       "RemoteSha": "c235e9612a521ec381197fe9872f8459967142b1",
       "Requirements": [
         "checkmate",
@@ -2048,7 +1888,7 @@
     },
     "survival": {
       "Package": "survival",
-      "Version": "3.7-0",
+      "Version": "3.8-3",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -2060,14 +1900,14 @@
         "stats",
         "utils"
       ],
-      "Hash": "5aaa9cbaf4aba20f8e06fdea1850a398"
+      "Hash": "fe42836742a4f065b3f3f5de81fccab9"
     },
     "sys": {
       "Package": "sys",
-      "Version": "3.4.2",
+      "Version": "3.4.3",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "3a1be13d68d47a8cd0bfd74739ca1555"
+      "Hash": "de342ebfebdbf40477d0758d05426646"
     },
     "systemfonts": {
       "Package": "systemfonts",
@@ -2094,7 +1934,7 @@
     },
     "textshaping": {
       "Package": "textshaping",
-      "Version": "0.4.0",
+      "Version": "0.4.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -2103,7 +1943,7 @@
         "lifecycle",
         "systemfonts"
       ],
-      "Hash": "5142f8bc78ed3d819d26461b641627ce"
+      "Hash": "573e0d015b7fc3e555f83e254cad7533"
     },
     "threejs": {
       "Package": "threejs",
@@ -2232,13 +2072,13 @@
     },
     "tinytex": {
       "Package": "tinytex",
-      "Version": "0.52",
+      "Version": "0.54",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "xfun"
       ],
-      "Hash": "cfbad971a71f0e27cec22e544a08bc3b"
+      "Hash": "3ec7e3ddcacc2d34a9046941222bf94d"
     },
     "truncnorm": {
       "Package": "truncnorm",
@@ -2273,13 +2113,13 @@
     },
     "uuid": {
       "Package": "uuid",
-      "Version": "1.2-0",
+      "Version": "1.2-1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
-      "Hash": "303c19bfd970bece872f93a824e323d9"
+      "Hash": "34e965e62a41fcafb1ca60e9b142085b"
     },
     "vctrs": {
       "Package": "vctrs",
@@ -2364,7 +2204,7 @@
     },
     "withr": {
       "Package": "withr",
-      "Version": "3.0.1",
+      "Version": "3.0.2",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -2372,7 +2212,7 @@
         "grDevices",
         "graphics"
       ],
-      "Hash": "07909200e8bbe90426fbfeb73e1e27aa"
+      "Hash": "cc2d62c76458d425210d1eb1478b30b4"
     },
     "wpp2017": {
       "Package": "wpp2017",
@@ -2387,15 +2227,16 @@
     },
     "xfun": {
       "Package": "xfun",
-      "Version": "0.46",
+      "Version": "0.49",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
+        "R",
         "grDevices",
         "stats",
         "tools"
       ],
-      "Hash": "00ce32f398db0415dde61abfef11300c"
+      "Hash": "8687398773806cfff9401a2feca96298"
     },
     "xml2": {
       "Package": "xml2",
@@ -2410,28 +2251,16 @@
       ],
       "Hash": "1d0336142f4cd25d8d23cd3ba7a8fb61"
     },
-    "xtable": {
-      "Package": "xtable",
-      "Version": "1.8-4",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "stats",
-        "utils"
-      ],
-      "Hash": "b8acdf8af494d9ec19ccb2481a9b11c2"
-    },
     "yaml": {
       "Package": "yaml",
-      "Version": "2.3.8",
+      "Version": "2.3.10",
       "Source": "Repository",
-      "Repository": "RSPM",
-      "Hash": "29240487a071f535f5e5d5a323b7afbd"
+      "Repository": "CRAN",
+      "Hash": "51dab85c6c98e50a18d7551e9d49f76c"
     },
     "ympes": {
       "Package": "ympes",
-      "Version": "1.6.0",
+      "Version": "1.7.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -2441,7 +2270,7 @@
         "methods",
         "utils"
       ],
-      "Hash": "2f6d0d9311fe94740517f32ae079a6dc"
+      "Hash": "9f7012d52998142492ec8dea22c32efe"
     }
   }
 }