Old pipeline

[mandresm]

Describes the full SEAMORE pipeline

[this is work in progress]

flowchart LR

    o.process[<a href='https://github.com/FESOM/seamore/blob/7725366f7b68ea3824ac6baa500ea49531722b72/bin/seamore#L83-L92'>seamore process</a>] 

    subgraph cmorizer.Project.execute[<a href='https://github.com/FESOM/seamore/blob/7725366f7b68ea3824ac6baa500ea49531722b72/lib/cmorizer.rb#L23'>cmorizer.Project.execute</a>]
        direction TB
        FesomOutputDir[<a href='https://github.com/FESOM/seamore/blob/7725366f7b68ea3824ac6baa500ea49531722b72/lib/fesom_output_dir.rb#L24'>FesomOutputDir</a>]
         --> sort_by_year[Sort files by year]
         --> first_year[define first year]
         -->  last_year[define last year]
         --> year_ranges[<a href='https://github.com/FESOM/seamore/blob/7725366f7b68ea3824ac6baa500ea49531722b72/lib/cmorizer.rb#L182'>calculate year ranges</a>]
         --> mkdir_out[mkdir output directory]
         --> continue[<a href=https://github.com/FESOM/seamore/blob/7725366f7b68ea3824ac6baa500ea49531722b72/lib/cmorizer.rb#L48'>to_be_continued</a>]
    end

    subgraph user_script[user script]
        direction TB
        var_definitions[var definitions]
        --> experiment_id[experiment id block definition]
        --> cmorize_defaults[define default cmorization pipeline]
        --> cmorize1[<a href='https://github.com/FESOM/seamore/blob/7725366f7b68ea3824ac6baa500ea49531722b72/lib/cmorizer.rb#L169-L176'>cmorizer.Project.<b>cmorize</b> fesom_var1_freq => &lbrack;table_var1_SIfreq&rbrack;</a>]
        --> cmorize2[cmorizer.Project.<b>cmorize</b> fesom_var2_freq => &lbrack;table_var2_SIfreq&rbrack;]
        --> cmorize3[cmorizer.Project.<b>cmorize</b> fesom_var3_freq => &lbrack;table_var3_SIfreq&rbrack;]
        --> user_script_d1[...]
    end


    o.process --> cmorizer.Project.new --> cmorizer.Project.execute

    cmorize1 --> step_chains_new[add a StepChains to the steps]

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