Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

add 3 hybrid strategy #41

Open
fmalmeida opened this issue Dec 20, 2022 · 2 comments
Open

add 3 hybrid strategy #41

fmalmeida opened this issue Dec 20, 2022 · 2 comments
Assignees
@fmalmeida
Labels
enhancement New feature or request

Comments

@fmalmeida
Copy link
Owner

Add another hybrid strategy for samples where this might be the best option.

This strategy is to perform a short reads assembly and then scaffold with long reads.
@fmalmeida
Copy link
Owner Author

A tool that can be used for this is LongStitch.

@fmalmeida fmalmeida self-assigned this Jul 21, 2024
@fmalmeida fmalmeida added the enhancement New feature or request label Jul 21, 2024
@fmalmeida
Copy link
Owner Author

In specific branch, this workflow has already started with pipeline already accepting it and generating short reads assemblies.

Now, scaffolding needs to be added, then connect it to QC and update all documentation.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@fmalmeida fmalmeida

Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

When branches are created from issues, their pull requests are automatically linked.

41-add-3-hybrid-strategy fmalmeida/MpGAP
1 participant
@fmalmeida