diff --git a/markdown/CHANGELOG.md b/markdown/CHANGELOG.md index d8be2487..03aa2d4a 100644 --- a/markdown/CHANGELOG.md +++ b/markdown/CHANGELOG.md @@ -4,6 +4,8 @@ The tracking for changes started in v2. ## v3.2.1 +* [#77](https://github.com/fmalmeida/MpGAP/issues/77) + * Add cleanup to avoid `overwrite existing files` error in BUSCO when resuming a run. * [#79](https://github.com/fmalmeida/MpGAP/issues/79) * Add if-else in MultiQC module so that if Quast report has different set of columns. diff --git a/modules/local/QualityAssessment/quast.nf b/modules/local/QualityAssessment/quast.nf index 4e920042..c17f581e 100644 --- a/modules/local/QualityAssessment/quast.nf +++ b/modules/local/QualityAssessment/quast.nf @@ -54,6 +54,7 @@ process quast { // any case """ # run quast + rm -rf ${assembler}/ quast.py \\ -o ${assembler} \\ -t $task.cpus \\ @@ -68,6 +69,7 @@ process quast { # run busco cp -r /opt/busco_db . busco \\ + -f \\ --tar \\ --download_path ./ \\ -i ${contigs} \\