From 17811e992ecb5b8491444b95c944fd9f9b64e440 Mon Sep 17 00:00:00 2001
From: Martin Cech <marten@bx.psu.edu>
Date: Fri, 20 Sep 2024 08:42:20 +0200
Subject: [PATCH] order output collection elements

newer profile expects that
---
 tools/ucsc_tools/fasplit/fasplit.xml | 48 ++++++++++++++--------------
 1 file changed, 24 insertions(+), 24 deletions(-)

diff --git a/tools/ucsc_tools/fasplit/fasplit.xml b/tools/ucsc_tools/fasplit/fasplit.xml
index a2282c48f68..b86ffcf4a46 100644
--- a/tools/ucsc_tools/fasplit/fasplit.xml
+++ b/tools/ucsc_tools/fasplit/fasplit.xml
@@ -64,43 +64,43 @@ out/
             <param name="split_type" value="byname"/>
             <output_collection name="output_list" type="list">
                 <element name="ENSCAFT00000022939_canisfamiliaris" file="ENSCAFT00000022939_canisfamiliaris.fa" />
-                <element name="ENSMUST00000207100_musmusculus" file="ENSMUST00000207100_musmusculus.fa" />
-                <element name="ENSSSCT00000014817_susscrofa" file="ENSSSCT00000014817_susscrofa.fa" />
                 <element name="ENSCAFT00000022963_canisfamiliaris" file="ENSCAFT00000022963_canisfamiliaris.fa" />
-                <element name="ENSMUST00000208839_musmusculus" file="ENSMUST00000208839_musmusculus.fa" />
-                <element name="ENSSSCT00000023183_susscrofa" file="ENSSSCT00000023183_susscrofa.fa" />
                 <element name="ENSCAFT00000025950_canisfamiliaris" file="ENSCAFT00000025950_canisfamiliaris.fa" />
-                <element name="ENSPTRT00000019089_pantroglodytes" file="ENSPTRT00000019089_pantroglodytes.fa" />
-                <element name="ENSSSCT00000032764_susscrofa" file="ENSSSCT00000032764_susscrofa.fa" />
                 <element name="ENSMUST00000026013_musmusculus" file="ENSMUST00000026013_musmusculus.fa" />
-                <element name="ENSPTRT00000034846_pantroglodytes" file="ENSPTRT00000034846_pantroglodytes.fa" />
-                <element name="ENSSSCT00000033745_susscrofa" file="ENSSSCT00000033745_susscrofa.fa" />
                 <element name="ENSMUST00000040820_musmusculus" file="ENSMUST00000040820_musmusculus.fa" />
-                <element name="ENSPTRT00000040520_pantroglodytes" file="ENSPTRT00000040520_pantroglodytes.fa" />
-                <element name="ENSSSCT00000035258_susscrofa" file="ENSSSCT00000035258_susscrofa.fa" />
                 <element name="ENSMUST00000041588_musmusculus" file="ENSMUST00000041588_musmusculus.fa" />
-                <element name="ENSPTRT00000040521_pantroglodytes" file="ENSPTRT00000040521_pantroglodytes.fa" />
-                <element name="ENST00000302850_homosapiens" file="ENST00000302850_homosapiens.fa" />
                 <element name="ENSMUST00000091291_musmusculus" file="ENSMUST00000091291_musmusculus.fa" />
-                <element name="ENSRNOT00000041155_rattusnorvegicus" file="ENSRNOT00000041155_rattusnorvegicus.fa" />
-                <element name="ENST00000338702_homosapiens" file="ENST00000338702_homosapiens.fa" />
                 <element name="ENSMUST00000100505_musmusculus" file="ENSMUST00000100505_musmusculus.fa" />
-                <element name="ENSRNOT00000044009_rattusnorvegicus" file="ENSRNOT00000044009_rattusnorvegicus.fa" />
-                <element name="ENST00000340611_homosapiens" file="ENST00000340611_homosapiens.fa" />
                 <element name="ENSMUST00000110806_musmusculus" file="ENSMUST00000110806_musmusculus.fa" />
-                <element name="ENSRNOT00000064726_rattusnorvegicus" file="ENSRNOT00000064726_rattusnorvegicus.fa" />
-                <element name="ENST00000341500_homosapiens" file="ENST00000341500_homosapiens.fa" />
                 <element name="ENSMUST00000153440_musmusculus" file="ENSMUST00000153440_musmusculus.fa" />
-                <element name="ENSRNOT00000066674_rattusnorvegicus" file="ENSRNOT00000066674_rattusnorvegicus.fa" />
-                <element name="ENST00000378069_homosapiens" file="ENST00000378069_homosapiens.fa" />
                 <element name="ENSMUST00000163344_musmusculus" file="ENSMUST00000163344_musmusculus.fa" />
-                <element name="ENSRNOT00000067448_rattusnorvegicus" file="ENSRNOT00000067448_rattusnorvegicus.fa" />
-                <element name="ENST00000421712_homosapiens" file="ENST00000421712_homosapiens.fa" />
                 <element name="ENSMUST00000168613_musmusculus" file="ENSMUST00000168613_musmusculus.fa" />
-                <element name="ENSSSCT00000008295_susscrofa" file="ENSSSCT00000008295_susscrofa.fa" />
-                <element name="ENST00000542639_homosapiens" file="ENST00000542639_homosapiens.fa" />
                 <element name="ENSMUST00000173143_musmusculus" file="ENSMUST00000173143_musmusculus.fa" />
+                <element name="ENSMUST00000207100_musmusculus" file="ENSMUST00000207100_musmusculus.fa" />
+                <element name="ENSMUST00000208839_musmusculus" file="ENSMUST00000208839_musmusculus.fa" />
+                <element name="ENSPTRT00000019089_pantroglodytes" file="ENSPTRT00000019089_pantroglodytes.fa" />
+                <element name="ENSPTRT00000034846_pantroglodytes" file="ENSPTRT00000034846_pantroglodytes.fa" />
+                <element name="ENSPTRT00000040520_pantroglodytes" file="ENSPTRT00000040520_pantroglodytes.fa" />
+                <element name="ENSPTRT00000040521_pantroglodytes" file="ENSPTRT00000040521_pantroglodytes.fa" />
+                <element name="ENSRNOT00000041155_rattusnorvegicus" file="ENSRNOT00000041155_rattusnorvegicus.fa" />
+                <element name="ENSRNOT00000044009_rattusnorvegicus" file="ENSRNOT00000044009_rattusnorvegicus.fa" />
+                <element name="ENSRNOT00000064726_rattusnorvegicus" file="ENSRNOT00000064726_rattusnorvegicus.fa" />
+                <element name="ENSRNOT00000066674_rattusnorvegicus" file="ENSRNOT00000066674_rattusnorvegicus.fa" />
+                <element name="ENSRNOT00000067448_rattusnorvegicus" file="ENSRNOT00000067448_rattusnorvegicus.fa" />
+                <element name="ENSSSCT00000008295_susscrofa" file="ENSSSCT00000008295_susscrofa.fa" />
                 <element name="ENSSSCT00000013404_susscrofa" file="ENSSSCT00000013404_susscrofa.fa" />
+                <element name="ENSSSCT00000014817_susscrofa" file="ENSSSCT00000014817_susscrofa.fa" />
+                <element name="ENSSSCT00000023183_susscrofa" file="ENSSSCT00000023183_susscrofa.fa" />
+                <element name="ENSSSCT00000032764_susscrofa" file="ENSSSCT00000032764_susscrofa.fa" />
+                <element name="ENSSSCT00000033745_susscrofa" file="ENSSSCT00000033745_susscrofa.fa" />
+                <element name="ENSSSCT00000035258_susscrofa" file="ENSSSCT00000035258_susscrofa.fa" />
+                <element name="ENST00000302850_homosapiens" file="ENST00000302850_homosapiens.fa" />
+                <element name="ENST00000338702_homosapiens" file="ENST00000338702_homosapiens.fa" />
+                <element name="ENST00000340611_homosapiens" file="ENST00000340611_homosapiens.fa" />
+                <element name="ENST00000341500_homosapiens" file="ENST00000341500_homosapiens.fa" />
+                <element name="ENST00000378069_homosapiens" file="ENST00000378069_homosapiens.fa" />
+                <element name="ENST00000421712_homosapiens" file="ENST00000421712_homosapiens.fa" />
+                <element name="ENST00000542639_homosapiens" file="ENST00000542639_homosapiens.fa" />
                 <element name="ENST00000600492_homosapiens" file="ENST00000600492_homosapiens.fa" />
             </output_collection>
         </test>