diff --git a/tools/edger/edger.xml b/tools/edger/edger.xml
index a8c58938642..e8df7ce74db 100644
--- a/tools/edger/edger.xml
+++ b/tools/edger/edger.xml
@@ -3,7 +3,7 @@
         Perform differential expression of count data
     </description>
     <macros>
-        <token name="@TOOL_VERSION@">3.42.4</token>
+        <token name="@TOOL_VERSION@">4.0.2</token>
         <token name="@VERSION_SUFFIX@">0</token>
     </macros>
     <xrefs>
@@ -19,12 +19,12 @@
 
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">bioconductor-edger</requirement>
-        <requirement type="package" version="3.56.2">bioconductor-limma</requirement>
+        <requirement type="package" version="3.58.1">bioconductor-limma</requirement>
         <requirement type="package" version="0.2.21">r-rjson</requirement>
-        <requirement type="package" version="1.20.3">r-getopt</requirement>
+        <requirement type="package" version="1.20.4">r-getopt</requirement>
         <requirement type="package" version="1.5.0">r-statmod</requirement>
         <!-- required for alpha function used with plotMD -->
-        <requirement type="package" version="1.2.1">r-scales</requirement>
+        <requirement type="package" version="1.3.0">r-scales</requirement>
     </requirements>
 
     <version_command><![CDATA[