From f0639ff688df694419583b6ebff1b1fac2182051 Mon Sep 17 00:00:00 2001 From: "Richard C. Burhans" Date: Mon, 14 Oct 2024 14:39:31 -0400 Subject: [PATCH] adding enviroment variable TMPVAR for NCBI FCS GX --- env/common/templates/galaxy/config/tpv/tools.yaml.j2 | 4 ++++ env/common/templates/galaxy/config/tpv/tools_vgp.yaml.j2 | 3 +++ 2 files changed, 7 insertions(+) diff --git a/env/common/templates/galaxy/config/tpv/tools.yaml.j2 b/env/common/templates/galaxy/config/tpv/tools.yaml.j2 index da3155da..c913b8a3 100644 --- a/env/common/templates/galaxy/config/tpv/tools.yaml.j2 +++ b/env/common/templates/galaxy/config/tpv/tools.yaml.j2 @@ -1274,11 +1274,15 @@ tools: # local test tools toolshed.g2.bx.psu.edu/repos/iuc/ncbi_fcs_gx/ncbi_fcs_gx/.*: + env: + - name: TMPDIR + value: /dev/shm scheduling: require: - resize-shm - jetstream2 - pulsar + ncbi_fcs_gx: inherits: toolshed.g2.bx.psu.edu/repos/iuc/ncbi_fcs_gx/ncbi_fcs_gx/.* diff --git a/env/common/templates/galaxy/config/tpv/tools_vgp.yaml.j2 b/env/common/templates/galaxy/config/tpv/tools_vgp.yaml.j2 index d04579ef..191029f0 100644 --- a/env/common/templates/galaxy/config/tpv/tools_vgp.yaml.j2 +++ b/env/common/templates/galaxy/config/tpv/tools_vgp.yaml.j2 @@ -518,6 +518,9 @@ tools: - pulsar toolshed.g2.bx.psu.edu/repos/iuc/ncbi_fcs_gx/ncbi_fcs_gx/.*: + env: + - name: TMPDIR + value: /dev/shm scheduling: require: - resize-shm