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DESCRIPTION
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Package: GEOexplorer
Title: GEOexplorer: a webserver for gene expression analysis and visualisation
Date: 2023/10/17
Version: 1.6.1
Authors@R:
c(person(given = "Guy",
family = "Hunt",
role = c("aut", "cre"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-5217-2678")),
person(given = "Rafael",
family = "Henkin",
role = c("ctb", "ths"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-5511-5230")),
person(given = "Alfredo",
family = "Iacoangeli",
role = c("ctb", "ths"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-5280-5017")),
person(given = "Fabrizio",
family = "Smeraldi",
role = c("ctb", "ths"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-0057-8940")),
person(given = "Michael",
family = "Barnes",
role = c("ctb", "ths"),
email = "[email protected]",
comment = c(ORCID = "0000-0001-9097-7381")))
Description: GEOexplorer is a webserver and R/Bioconductor package and web application
that enables users to perform gene expression analysis. The development of
GEOexplorer was made possible because of the excellent code provided by
GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).
License: GPL-3
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
URL: https://github.com/guypwhunt/GEOexplorer/
BugReports: https://github.com/guypwhunt/GEOexplorer/issues
RoxygenNote: 7.2.3
biocViews:
Software,
GeneExpression,
mRNAMicroarray,
DifferentialExpression,
Microarray,
MicroRNAArray,
Transcriptomics,
RNASeq
Depends:
shiny,
limma,
Biobase,
plotly,
enrichR,
R (>= 4.1.0)
Imports:
DT,
XML,
httr,
sva,
xfun,
edgeR,
htmltools,
factoextra,
heatmaply,
pheatmap,
scales,
shinyHeatmaply,
shinybusy,
ggplot2,
stringr,
umap,
GEOquery,
impute,
grDevices,
stats,
graphics,
markdown,
knitr,
utils,
xml2,
R.utils,
readxl,
shinycssloaders
Suggests:
rmarkdown,
usethis,
testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3