DESCRIPTION

Package: scfind
Type: Package
Title: A search tool for single cell RNA-seq data by gene lists
Version: 3.7.1
Author: Jimmy Lee, Nikolaos Patikas
Maintainer: Jimmy Lee <thjimmylee@gmail.com>, Nikolaos Patikas <nik.patik@gmail.com>
Authors@R: c(person("Jimmy Tsz Hang","Lee",
             email = "thjimmylee@gmail.com",
             role=c("aut", "cre")),
             person("Nikolaos","Patikas",
             email = "nik.patik@gmail.com",
             role=c("aut", "cre")),
             person("Vladimir", "Kiselev",
             email = "vladimir.yu.kiselev@gmail.com",
             role=c("aut")),
             person("Martin", "Hemberg",
             role=c("aut")))
Description: Recently a very large collection of single-cell RNA-seq (scRNA-seq) datasets 
             has been generated and publicly released. For the collection to be 
             useful, the information must be organized in a way that supports 
             queries that are relevant to researchers. `scfind` builds an index 
             from scRNA-seq datasets which organizes the information in a suitable
             and compact manner so that the datasets can be very efficiently 
             searched for either cells or cell types in which a given list of 
             genes is expressed.
License: GPL-3 + file LICENSE
Imports:
    SingleCellExperiment, methods, Rcpp (>= 0.8.5), SummarizedExperiment, shiny, data.table, DT, hash, ggplot2, stats
LinkingTo: Rcpp, RcppArmadillo
Depends: R(>= 3.5)
RcppModules: EliasFanoDB
Encoding: UTF-8
LazyLoad: yes
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: SingleCell, Software, RNASeq, Transcriptomics, 
            DataRepresentation, Transcription, Sequencing,
            GeneExpression
NeedsCompilation: yes
URL: https://github.com/hemberg-lab/scfind
BugReports: https://github.com/hemberg-lab/scfind/issues
LazyData: true
Collate: 
    'AllGenerics.R'
    'CoreFunctions.R'
    'CoreMethods.R'
    'ExampleIndex.R'
    'ShinyMethods.R'
    'Utils.R'
    'scfind-package.R'
    'tm10x.R'
    'tmfacs.R'
    'global.R'
    'server.R'
    'ui.R'
    'zzz.R'