diff --git a/.github/workflows/check_project.yml b/.github/workflows/check_project.yml new file mode 100755 index 0000000..80fabe3 --- /dev/null +++ b/.github/workflows/check_project.yml @@ -0,0 +1,17 @@ +on: + push: + branches-ignore: + - gh-pages + +name: check-project + +jobs: + check-src: + runs-on: ubuntu-latest + name: "check project with checklist" + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + permissions: + contents: read + steps: + - uses: inbo/actions/check_project@main diff --git a/.gitignore b/.gitignore index 7ea26a2..650d3c4 100644 --- a/.gitignore +++ b/.gitignore @@ -1,9 +1,18 @@ +*.dbf +*.doc* +*.gddoc +*.gdsheet *.gpkg *.gpkg-shm *.gpkg-wal *.html +*.mdb *.pbf +*.shp* +*.shx +*.xls* *.zip +*_files .DS_Store .RData .Rhistory @@ -13,5 +22,8 @@ cover.txt data/* docs +libs open_ruimte/* +output output/* +renv/library diff --git a/.zenodo.json b/.zenodo.json index 99b5156..c03d25a 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -1,4 +1,5 @@ { + "access_right": "open", "title": "Sampling frame for partridge (Perdrix perdrix) in Flanders", "version": "2023.1", "description": "

Since 2008, partridge hunting in Flanders has been subject to a\nnumber of conditions. The first condition states compliance with an\naverage density of at least 3 breeding pairs per 100 ha of open space.\nThe Research Institute for Nature and Forest (INBO<\/a>) is responsible for\nthe calculation of these densities and advises the Agency for Nature and\nForests (ANB<\/a>) on this.<\/p>\n

This repository contains the source code to generate the layer with\nopen space within hunting grounds<\/a> in\nFlanders. The selection is based on relevant categories of the OpenStreetMap<\/a> information.<\/p>\n

We aim to make the layer reproducible by making the code publicly\navailable under an open source license. The code itself requires only\nfreeware open source software (R<\/a> and QGIS<\/a>). The OpenStreetMap database updates\ncontinuously. Rerunning the code on the current database might yield a\ndifferent layer. Therefore we also republish the snapshot<\/a> of the\nOpenStreetMap data we used. When we need to update the open space layer,\nwe will add an updated snapshot as a new version. Having both the code\nand the data available under version control, allows to recreate both\nthe most recent version as any older version.<\/p>", @@ -18,7 +19,7 @@ "type": "ContactPerson" }, { - "name": "Research Institute for Nature and Forest", + "name": "Research Institute for Nature and Forest (INBO)", "type": "RightsHolder" } ], @@ -34,7 +35,6 @@ "orcid": "0000-0003-1025-8702" } ], - "access_right": "open", "communities": [ { "identifier": "inbo" diff --git a/CITATION.cff b/CITATION.cff index 9cab30d..0f73500 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -21,7 +21,7 @@ contact: orcid: 0000-0001-8804-4216 doi: 10.5281/zenodo.5814813 license: CC-BY-4.0 -repository-code: https://github.com/inbo/patrijs-steekproefkader +repository-code: https://github.com/inbo/patrijs-steekproefkader/ type: software abstract: |- Since 2008, partridge hunting in Flanders has been subject to a number of conditions. diff --git a/README.md b/README.md index 239acde..ceae42e 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,7 @@ [Onkelinx, Thierry![ORCID logo](https://info.orcid.org/wp-content/uploads/2019/11/orcid_16x16.png)](https://orcid.org/0000-0001-8804-4216)[^aut][^cre][^INBO]; [Carmen, Raïsa![ORCID logo](https://info.orcid.org/wp-content/uploads/2019/11/orcid_16x16.png)](https://orcid.org/0000-0003-1025-8702)[^aut][^INBO]; -Research Institute for Nature and Forest[^cph][^fnd] +Research Institute for Nature and Forest (INBO)[^cph][^fnd] [^aut]: author [^cre]: contact person diff --git a/checklist.yml b/checklist.yml index 4ad3d98..1c724c5 100644 --- a/checklist.yml +++ b/checklist.yml @@ -7,6 +7,7 @@ required: - CITATION - checklist - filename conventions +- folder conventions - license - lintr - spelling @@ -15,13 +16,10 @@ spelling: ignore: - .github - LICENSE.md - - output - renv - - source/create_map + - source/rapport/LICENSE.md other: nl-BE: - - source/density/detectie.Rmd - - source/density/detectie2.Rmd - source/rapport/01_inleiding.Rmd - source/rapport/1_alternatief.Rmd - source/rapport/2_relevant.Rmd diff --git a/data/downloads/checksum.csv b/data/downloads/checksum.csv index 092567b..92aa0d8 100644 --- a/data/downloads/checksum.csv +++ b/data/downloads/checksum.csv @@ -1,5 +1,5 @@ file,sha512 -geofabrik_belgium-latest.osm.pbf,c97842519b455fe399a854361d363d6d656a66fb745b498a1535d8c7a44481ea194c6f2ee4344aeb93fb7c5dceb4a309a389d168d94c40ff42a715352f4ec46c +geofabrik_belgium-latest.osm.pbf,bd685b823d12ae1322a17b7f56ef566bd3ae37966b2a814137bee11894076ae3541813e01f83e312a09ee402cf74faf30202c94fc5a3f7c69110a12aeb949807 jacht.zip,e948916e507ce4b4b66b328e7ad8ae72f74304da141e01421119d16de5a84c4f3d96191b900ddf6641a05eddb88c9c80302ea49fc6cad8388f1e0891149a6f6a jachtter.dbf,4038b72b47495333b83b36b8542b8e89f3b20d450bb5620032d2643d4d537b2840d8d67ec98e63ee4619ccc90b9a2aae4449aa1434a883b8e95fb38a61ce2c35 jachtter.prj,ee7b429567697bd7f4121c69aeb3d345a9176be5206f339b5902c755a567cdf78706326706ad682cd80fe167726cbfe9ecc12a746681bbeeada5226426d2aaf2 diff --git a/data/downloads/checksum.yml b/data/downloads/checksum.yml index 6c0f3a9..bc63b1e 100644 --- a/data/downloads/checksum.yml +++ b/data/downloads/checksum.yml @@ -4,7 +4,7 @@ NA string: NA sorting: file hash: 4357f869729f2486f31b410815b8dbd8fa089baf - data_hash: c13513f7b776d7fa1199faa6f621a24b0153fde2 + data_hash: 1c6612a0dd5ead667de79a73736f6c3a1fd96054 file: class: character sha512: diff --git a/inst/en_gb.dic b/inst/en_gb.dic new file mode 100644 index 0000000..9f4b310 --- /dev/null +++ b/inst/en_gb.dic @@ -0,0 +1,10 @@ +BVM +Cartoweb +GMU +Limburg +Onkelinx +OpenStreetMap +Perdrix +QGIS +Raïsa +perdrix diff --git a/inst/nl_be.dic b/inst/nl_be.dic new file mode 100644 index 0000000..2f77716 --- /dev/null +++ b/inst/nl_be.dic @@ -0,0 +1,15 @@ +Bosonderzoek +Delaunay-triangulatie +Natuur- +OpenStreetMap-kaart +QGIS +WBE +begrenzingsvak +compactheidscore +landsgebruikskaart +open-ruimte-kaart +perceelsaangifte +telblok +telblokken +telprotocol +voorjaarsstand diff --git a/renv.lock b/renv.lock index 1853ada..301c067 100644 --- a/renv.lock +++ b/renv.lock @@ -1,6 +1,6 @@ { "R": { - "Version": "4.2.1", + "Version": "4.3.0", "Repositories": [ { "Name": "CRAN", @@ -9,6 +9,10 @@ { "Name": "INLA", "URL": "https://inla.r-inla-download.org/R/testing" + }, + { + "Name": "inbo", + "URL": "https://inbo.r-universe.dev" } ] }, @@ -18,31 +22,37 @@ "Version": "1.1.3", "Source": "Repository", "Repository": "CRAN", - "Hash": "b2866e62bab9378c3cc9476a1954226b", - "Requirements": [] + "Requirements": [ + "R", + "methods" + ], + "Hash": "b2866e62bab9378c3cc9476a1954226b" }, "INBOmd": { "Package": "INBOmd", - "Version": "0.5.3", + "Version": "0.6.0", "Source": "GitHub", "RemoteType": "github", "RemoteUsername": "inbo", "RemoteRepo": "INBOmd", "RemoteRef": "main", - "RemoteSha": "33fdf6c06ec1f357ba048c5f24831726be2ea3b1", + "RemoteSha": "63e582a2bf905505d48cff04e13fcaea602f6c5e", "RemoteHost": "api.github.com", - "Hash": "828ae2e1aa1333dab493271ac4aa6340", "Requirements": [ "assertthat", "bookdown", + "checklist", "dplyr", + "fs", "gert", "htmltools", "knitr", "pdftools", "qrcode", - "rmarkdown" - ] + "rmarkdown", + "utils" + ], + "Hash": "e53347188187eafd807afd00a17151d7" }, "INBOtheme": { "Package": "INBOtheme", @@ -55,216 +65,217 @@ "RemoteSha": "3ec81698ef57495b6480a51805d91cdb383cc10f", "RemoteHost": "api.github.com", "Remotes": "clauswilke/colorblindr", - "Hash": "b7e3aaf5daee34ea9c94d898e5b57243", + "Remotes": "clauswilke/colorblindr", "Requirements": [ + "R", "assertthat", "colorspace", "ggplot2", + "grid", "scales" - 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"Version": "0.4.1", + "Version": "0.4.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "62f4b5da3e08d8e5bcba6cac15603f70", - "Requirements": [] + "Requirements": [ + "R" + ], + "Hash": "c826c7c4241b6fc89ff55aaea3fa7491" }, "vroom": { "Package": "vroom", - "Version": "1.6.0", + "Version": "1.6.3", "Source": "Repository", "Repository": "CRAN", - "Hash": "64f81fdead6e0d250fb041e175d123ab", "Requirements": [ + "R", "bit64", "cli", "cpp11", @@ -1922,78 +2811,155 @@ "glue", "hms", "lifecycle", + "methods", "progress", "rlang", + "stats", "tibble", "tidyselect", "tzdb", "vctrs", "withr" - ] + ], + "Hash": "8318e64ffb3a70e652494017ec455561" + }, + "waldo": { + "Package": "waldo", + "Version": "0.5.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "cli", + "diffobj", + "fansi", + "glue", + "methods", + "rematch2", + "rlang", + "tibble" + ], + "Hash": "2c993415154cdb94649d99ae138ff5e5" + }, + "whisker": { + "Package": "whisker", + "Version": "0.4.1", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "c6abfa47a46d281a7d5159d0a8891e88" }, "withr": { "Package": "withr", "Version": "2.5.0", "Source": "Repository", "Repository": "CRAN", - 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"Hash": "40682ed6a969ea5abfd351eb67833adc", - "Requirements": [] + "Requirements": [ + "R" + ], + "Hash": "45e4bf3c46476896e821fc0a408fb4fc" + }, + "xopen": { + "Package": "xopen", + "Version": "1.0.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "processx" + ], + "Hash": "6c85f015dee9cc7710ddd20f86881f58" + }, + "xtable": { + "Package": "xtable", + "Version": "1.8-4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "stats", + "utils" + ], + "Hash": "b8acdf8af494d9ec19ccb2481a9b11c2" }, "yaml": { "Package": "yaml", - "Version": "2.3.5", + "Version": "2.3.7", "Source": "Repository", "Repository": "CRAN", - "Hash": "458bb38374d73bf83b1bb85e353da200", - "Requirements": [] + "Hash": "0d0056cc5383fbc240ccd0cb584bf436" }, "zen4R": { "Package": "zen4R", - "Version": "0.7", + "Version": "0.9", "Source": "Repository", - "Repository": "CRAN", - "Hash": "ca2aac63f392bb5c5c8dffe5511019f8", + "Repository": "https://inbo.r-universe.dev", + "RemoteUrl": "https://github.com/eblondel/zen4R", + "RemoteRef": "HEAD", + "RemoteSha": "41c14a9b602dd5eebb514f48829b0d747581dd1c", "Requirements": [ + "R", "R6", "XML", "atom4R", "httr", "jsonlite", "keyring", + "methods", + "tools", "xml2" - ] + ], + "Hash": "0875c573b2aaeb46a2189981ddd0e435" }, "zip": { "Package": "zip", - "Version": "2.2.1", + "Version": "2.3.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "a7e91189fa51d9029a30eba3831ce53f", - "Requirements": [] + "Hash": "d98c94dacb7e0efcf83b0a133a705504" } } } diff --git a/renv/activate.R b/renv/activate.R index 019b5a6..a8fdc32 100644 --- a/renv/activate.R +++ b/renv/activate.R @@ -2,7 +2,7 @@ local({ # the requested version of renv - version <- "0.16.0" + version <- "0.17.3" # the project directory project <- getwd() @@ -63,6 +63,10 @@ local({ if (is.environment(x) || length(x)) x else y } + `%??%` <- function(x, y) { + if (is.null(x)) y else x + } + bootstrap <- function(version, library) { # attempt to download renv @@ -83,28 +87,39 @@ local({ renv_bootstrap_repos <- function() { + # get CRAN repository + cran <- getOption("renv.repos.cran", "https://cloud.r-project.org") + # check for repos override repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA) - if (!is.na(repos)) + if (!is.na(repos)) { + + # check for RSPM; if set, use a fallback repository for renv + rspm <- Sys.getenv("RSPM", unset = NA) + if (identical(rspm, repos)) + repos <- c(RSPM = rspm, CRAN = cran) + return(repos) + } + # check for lockfile repositories repos <- tryCatch(renv_bootstrap_repos_lockfile(), error = identity) if (!inherits(repos, "error") && length(repos)) return(repos) # if we're testing, re-use the test repositories - if (renv_bootstrap_tests_running()) - return(getOption("renv.tests.repos")) + if (renv_bootstrap_tests_running()) { + repos <- getOption("renv.tests.repos") + if (!is.null(repos)) + return(repos) + } # retrieve current repos repos <- getOption("repos") # ensure @CRAN@ entries are resolved - repos[repos == "@CRAN@"] <- getOption( - "renv.repos.cran", - "https://cloud.r-project.org" - ) + repos[repos == "@CRAN@"] <- cran # add in renv.bootstrap.repos if set default <- c(FALLBACK = "https://cloud.r-project.org") @@ -344,8 +359,7 @@ local({ return() # allow directories - info <- file.info(tarball, extra_cols = FALSE) - if (identical(info$isdir, TRUE)) { + if (dir.exists(tarball)) { name <- sprintf("renv_%s.tar.gz", version) tarball <- file.path(tarball, name) } @@ -659,8 +673,8 @@ local({ if (version == loadedversion) return(TRUE) - # assume four-component versions are from GitHub; three-component - # versions are from CRAN + # assume four-component versions are from GitHub; + # three-component versions are from CRAN components <- strsplit(loadedversion, "[.-]")[[1]] remote <- if (length(components) == 4L) paste("rstudio/renv", loadedversion, sep = "@") @@ -700,6 +714,12 @@ local({ # warn if the version of renv loaded does not match renv_bootstrap_validate_version(version) + # execute renv load hooks, if any + hooks <- getHook("renv::autoload") + for (hook in hooks) + if (is.function(hook)) + tryCatch(hook(), error = warning) + # load the project renv::load(project) @@ -842,11 +862,29 @@ local({ renv_json_read <- function(file = NULL, text = NULL) { + jlerr <- NULL + # if jsonlite is loaded, use that instead - if ("jsonlite" %in% loadedNamespaces()) - renv_json_read_jsonlite(file, text) + if ("jsonlite" %in% loadedNamespaces()) { + + json <- catch(renv_json_read_jsonlite(file, text)) + if (!inherits(json, "error")) + return(json) + + jlerr <- json + + } + + # otherwise, fall back to the default JSON reader + json <- catch(renv_json_read_default(file, text)) + if (!inherits(json, "error")) + return(json) + + # report an error + if (!is.null(jlerr)) + stop(jlerr) else - renv_json_read_default(file, text) + stop(json) } diff --git a/renv/settings.json b/renv/settings.json new file mode 100644 index 0000000..6238a3d --- /dev/null +++ b/renv/settings.json @@ -0,0 +1,17 @@ +{ + "bioconductor.version": null, + "external.libraries": [], + "ignored.packages": [], + "package.dependency.fields": [ + "Imports", + "Depends", + "LinkingTo" + ], + "r.version": [], + "snapshot.type": "implicit", + "use.cache": true, + "vcs.ignore.cellar": true, + "vcs.ignore.library": true, + "vcs.ignore.local": true, + "vcs.manage.ignores": true +} diff --git a/source/checklist.R b/source/checklist.R new file mode 100755 index 0000000..9125f17 --- /dev/null +++ b/source/checklist.R @@ -0,0 +1,2 @@ +library(checklist) +check_project() diff --git a/source/create_map/download.R b/source/create_map/download.R index b8620f2..27151d5 100644 --- a/source/create_map/download.R +++ b/source/create_map/download.R @@ -14,10 +14,10 @@ dir.create(dl, showWarnings = FALSE) if (file_test("-f", here(dl, "jachtter.shp"))) { relevant <- paste0("jachtter", c(".dbf", ".prj", ".shp", ".shx")) hashes <- read_vc("checksum", dl) - map(here(dl, relevant), file) %>% - map(sha512) %>% + map(here(dl, relevant), file) |> + map(sha512) |> map_chr(as.character) -> hash - data.frame(file = relevant, check = hash) %>% + data.frame(file = relevant, check = hash) |> inner_join(hashes, by = "file") -> to_test stopifnot( "Hash mismatch" = nrow(to_test) == length(relevant), @@ -27,12 +27,12 @@ if (file_test("-f", here(dl, "jachtter.shp"))) { } else { target <- "jacht.zip" if (!file_test("-f", here(dl, target))) { - download_zenodo(doi = "7190764", path = dl) + download_zenodo(doi = "10.5281/zenodo.7190764", path = dl, timeout = 600) } - here(dl, target) %>% - file() %>% - sha512() %>% - as.character() %>% + here(dl, target) |> + file() |> + sha512() |> + as.character() |> unclass() -> hash if (file_test("-f", here(dl, "checksum.csv"))) { hashes <- read_vc("checksum", dl) @@ -53,10 +53,10 @@ if (file_test("-f", here(dl, "jachtter.shp"))) { files = file.path("Shapefile", relevant), setTimes = TRUE, exdir = dl ) file.rename(here(dl, relevant), here(dl, tolower(relevant))) - map(here(dl, tolower(relevant)), file) %>% - map(sha512) %>% + map(here(dl, tolower(relevant)), file) |> + map(sha512) |> map_chr(as.character) -> hash - data.frame(file = tolower(relevant), check = hash) %>% + data.frame(file = tolower(relevant), check = hash) |> inner_join(hashes, by = "file") -> to_test stopifnot( "Hash of downloaded file doesn't match the stored hash" = all( @@ -64,31 +64,31 @@ if (file_test("-f", here(dl, "jachtter.shp"))) { all(to_test$check == to_test$sha512) ) ) - data.frame(file = tolower(relevant), check = hash) %>% - anti_join(hashes, by = "file") %>% - bind_rows(hashes) %>% - write_vc("checksum", root = dl, optimized = FALSE) + data.frame(file = tolower(relevant), sha512 = hash) |> + anti_join(hashes, by = "file") |> + bind_rows(hashes) |> + write_vc("checksum", root = dl, optimize = FALSE) } # OpenStreetMap target <- "geofabrik_belgium-latest.osm.pbf" hashes <- read_vc("checksum", dl) if (file_test("-f", here(dl, target))) { - here(dl, target) %>% - file() %>% - sha512() %>% - as.character() %>% + here(dl, target) |> + file() |> + sha512() |> + as.character() |> unclass() -> hash stopifnot( "Hash of downloaded file doesn't match the stored hash" = hash == hashes$sha512[hashes$file == target] ) } else { - download_zenodo(doi = "6628312", path = dl) - here(dl, target) %>% - file() %>% - sha512() %>% - as.character() %>% + download_zenodo(doi = "10.5281/zenodo.7962764", path = dl, timeout = 600) + here(dl, target) |> + file() |> + sha512() |> + as.character() |> unclass() -> hash if (any(hashes$file == target)) { stopifnot( diff --git a/source/rapport/1_alternatief.Rmd b/source/rapport/1_alternatief.Rmd index 0c91837..617b778 100644 --- a/source/rapport/1_alternatief.Rmd +++ b/source/rapport/1_alternatief.Rmd @@ -61,7 +61,7 @@ basis %>% ## Groenkaart {#s:groenkaart} -Bron: https://www.geopunt.be/catalogus/datasetfolder/2c64ca0c-5053-4a66-afac-24d69b1a09e7 +Bron: De meest recente versie geeft het landgebruik voor 2018 weer. In principe zal men de kaart elke drie jaar vernieuwen. @@ -103,12 +103,12 @@ basis %>% ``` ```{r groenkaart-legende, fig.cap = "Legende van de groenkaart."} -include_graphics("groenkaart-legende.png") +include_graphics("media/groenkaart-legende.png") ``` ## Landgebruik {#s:landgebruik} -Bron: https://www.geopunt.be/catalogus/datasetfolder/fe979929-a2b5-4353-94c5-608c4b109dc6 +Bron: De meest recente versie geeft het landgebruik voor 2019 weer. In principe zal men de kaart elke drie jaar vernieuwen. @@ -148,12 +148,12 @@ basis %>% ``` ```{r landgebruik-legende, fig.cap = "Legende van de landgebruikkaart."} -include_graphics("landgebruik-legende.png") +include_graphics("media/landgebruik-legende.png") ``` ## Landbouwgebruikspercelen {#s:landbouw} -Bron: https://www.geopunt.be/catalogus/datasetfolder/13cc8a4e-7292-4cb8-afc7-6e07d052b01a +Bron: De meest recente versie geeft de situatie van 2020 weer. In principe zal men de kaart jaarlijks vernieuwen. @@ -194,12 +194,12 @@ basis %>% ``` ```{r landbouw-legende, fig.cap = "Legende van de gewasgroepen van de landbouwgebruikspercelenkaart."} -include_graphics("landbouw-legende.png") +include_graphics("media/landbouw-legende.png") ``` ## OpenStreetMap {#s:osm} -Bron: https://www.openstreetmap.org +Bron: OpenStreetMap is een kaart waar wereldwijd vrijwilligers aan bijdragen. Het updaten van de kaart hangt bijgevolg af van de vrijwilligers. @@ -209,15 +209,14 @@ Ze bieden de informatie tevens aan als verschillende kant en klaar [online kaart De kaart is beschikbaar onder de [`Open Database License`](https://wiki.openstreetmap.org/wiki/NL:Open_Database_License). Elke polygoon bevat informatie in een gestandaardiseerd formaat. -Naast landgebruik kan er informatie zijn over gebouwen, administratieve gebieden, ... -We kunnen de open ruimte definiëren aan de hand van de polygonen die voldoen aan een goed gekozen set van kenmerken. +Naast landgebruik kan er informatie zijn over gebouwen, administratieve gebieden, ... We kunnen de open ruimte definiëren aan de hand van de polygonen die voldoen aan een goed gekozen set van kenmerken. Grosso modo is de actuele kwaliteit van deze kaart behoorlijk goed. Ze is niet perfect. Deels omdat ze op sommige plaatsen verouderd is. Deels omdat vrijwilligers zich soms vergissen van landgebruiksklasse of een gebied niet (helemaal) ingetekend hebben. -(ref:osm) Voorbeeld van OpenStreetMap. De legende is beschikbaar via https://wiki.openstreetmap.org/wiki/AreasTab. +(ref:osm) Voorbeeld van OpenStreetMap. De legende is beschikbaar via . ```{r osm, fig.cap = "(ref:osm)"} basis %>% @@ -229,7 +228,6 @@ basis %>% hideGroup("jachtterreinen") ``` - # Keuze van de basiskaartlaag Geen enkele van de kaarten uit het vorige hoofdstuk is de perfecte oplossing waar we naar op zoek zijn. @@ -255,7 +253,7 @@ En zo houden we bij het bepalen van de gemiddelde dichtheid van patrijs in de WB In het volgende hoofdstuk beschrijven we welke selecties we uitvoeren op basis van OpenStreetMap om de open-ruimte-kaart aan te maken. Iedereen kan op basis van deze regels vaststellen waarom we een bepaald perceel al dan niet als open ruimte indelen. -De eigenschappen van een polygoon kan je op https://www.openstreetmap.org eenvoudig opvragen via "Nabije objecten opvragen". +De eigenschappen van een polygoon kan je op eenvoudig opvragen via "Nabije objecten opvragen". Hiervoor selecteer je rechts de tool die als icoon een pijltje met vraagteken heeft. De cursor verandert dan in een vraagteken met pijl naar beneden. Daarmee klik je in het gebied waarvan je de informatie wenst op te vragen. diff --git a/source/rapport/LICENSE.md b/source/rapport/LICENSE.md new file mode 100644 index 0000000..7e5a52a --- /dev/null +++ b/source/rapport/LICENSE.md @@ -0,0 +1,161 @@ +## creative commons + +# Attribution 4.0 International + +Creative Commons Corporation (“Creative Commons”) is not a law firm and does not provide legal services or legal advice. Distribution of Creative Commons public licenses does not create a lawyer-client or other relationship. Creative Commons makes its licenses and related information available on an “as-is” basis. Creative Commons gives no warranties regarding its licenses, any material licensed under their terms and conditions, or any related information. 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If the provision cannot be reformed, it shall be severed from this Public License without affecting the enforceability of the remaining terms and conditions. + +c. No term or condition of this Public License will be waived and no failure to comply consented to unless expressly agreed to by the Licensor. + +d. Nothing in this Public License constitutes or may be interpreted as a limitation upon, or waiver of, any privileges and immunities that apply to the Licensor or You, including from the legal processes of any jurisdiction or authority. + +``` +Creative Commons is not a party to its public licenses. Notwithstanding, Creative Commons may elect to apply one of its public licenses to material it publishes and in those instances will be considered the “Licensor.” Except for the limited purpose of indicating that material is shared under a Creative Commons public license or as otherwise permitted by the Creative Commons policies published at [creativecommons.org/policies](http://creativecommons.org/policies), Creative Commons does not authorize the use of the trademark “Creative Commons” or any other trademark or logo of Creative Commons without its prior written consent including, without limitation, in connection with any unauthorized modifications to any of its public licenses or any other arrangements, understandings, or agreements concerning use of licensed material. For the avoidance of doubt, this paragraph does not form part of the public licenses. + +Creative Commons may be contacted at [creativecommons.org](http://creativecommons.org/). +``` diff --git a/source/rapport/_bookdown.yml b/source/rapport/_bookdown.yml index 331958d..afe1247 100644 --- a/source/rapport/_bookdown.yml +++ b/source/rapport/_bookdown.yml @@ -1,6 +1,6 @@ book_filename: "steekproefkader.Rmd" -output_dir: "../output" -delete_merged_file: FALSE +output_dir: "../../output" +delete_merged_file: TRUE language: label: fig: 'Figuur ' @@ -14,4 +14,4 @@ language: ex: 'Voorbeeld ' proof: 'Bewijs. ' remark: 'Opmerking. ' -edit: https://github.com/inbo/patrijs-steekproefkader/edit/main/rapport/%s +edit: https://github.com/inbo/patrijs-steekproefkader/edit/main/source/rapport/%s diff --git a/source/rapport/index.Rmd b/source/rapport/index.Rmd index 65e488e..381e991 100644 --- a/source/rapport/index.Rmd +++ b/source/rapport/index.Rmd @@ -2,40 +2,50 @@ # generic options. See ?INBOmd::report() for full list and more details. title: Afbakening van de open ruimte voor patrijs in functie van de jachtreglementering author: - - firstname: Thierry - name: Onkelinx + - name: + given: Thierry + family: Onkelinx email: "thierry.onkelinx@inbo.be" orcid: 0000-0002-1825-0097 - - firstname: Raïsa - name: Carmen + affiliation: Research Institute for Nature and Forest (INBO) + corresponding: true + - name: + given: Raïsa + family: Carmen email: "raisa.carmen@inbo.be" orcid: 0000-0003-1025-8702 + affiliation: Research Institute for Nature and Forest (INBO) style: Vlaanderen lang: nl reviewer: - - firstname: Thomas - name: Scheppers + - name: + given: Thomas + family: Scheppers email: "thomas.scheppers@inbo.be" orcid: 0000-0002-5098-9326 + affiliation: Research Institute for Nature and Forest (INBO) year: 2022 reportnr: 2 depotnr: D/2022/3241/023 doi: 10.21436/inbor.70809860 +funder: Research Institute for Nature and Forest (INBO) +rightsholder: Research Institute for Nature and Forest (INBO) +community: inbo +keywords: partridge; OpenStreetMap; reproducible research # report specific options. See ?INBOmd::report() for full list and more details. -shortauthor: Onkelinx, T. & Carmen, R. corresponding: thierry.onkelinx@inbo.be cover_photo: https://img5.vildaphoto.net/asset/l/117545.jpg cover_description: Roepende patrijs in maïsveld. © Yves Adams -cover: cover.pdf +cover: media/cover.pdf cooperation: - Agentschap voor Natuur en Bos - VAC Brussel - Herman Teirlinck - Havenlaan 88 bus 75 - 1000 Brussel - https://natuurenbos.be -cooperation_logo: anb.jpg +cooperation_logo: media/anb.jpg # pdf report specific options. See ?INBOmd::report() for full list and more details. @@ -57,7 +67,7 @@ output: bookdown::dontrun: default --- -# Samenvatting {-} +# Samenvatting {.unnumbered} **Waarom een open-ruimte-kaart?** @@ -80,7 +90,7 @@ Hoewel deze versie in 2020 gepubliceerd werd, wil dat niet zeggen dat alle infor In de praktijk bleek zowat driekwart van de gegevens ouder dan 2007. Vandaar dat we op zoek gaan naar een betere bron. -**Een _open_ open-ruimte-kaart** +**Een *open* open-ruimte-kaart** Na het afwegen van een aantal mogelijkheden, kozen we [OpenStreetMap](https://www.openstreetmap.org) als nieuwe bronkaart. Net zoals alle andere kandidaten is deze kaart niet perfect, maar wel goed genoeg om te gebruiken. @@ -102,6 +112,7 @@ In dit rapport beschrijven we hoe we de informatie van OpenStreetMap omzetten na De omzetting hebben we als een computerprogramma uitgewerkt. We publiceren dit computerprogramma samen met de open-ruimte-kaart en de gebruikte bronkaarten (OpenStreetMap en grenzen jachtgebieden). Op die manier kan iedereen de gebruikte regels (laten) nakijken of zelf uitvoeren. + ```{r setup, include = FALSE} library(knitr) opts_chunk$set( @@ -137,4 +148,5 @@ if (interactive()) { } ) } +conflicted::conflicts_prefer(dplyr::filter) ``` diff --git a/source/rapport/anb.jpg b/source/rapport/media/anb.jpg similarity index 100% rename from source/rapport/anb.jpg rename to source/rapport/media/anb.jpg diff --git a/source/rapport/cover.pdf b/source/rapport/media/cover.pdf similarity index 100% rename from source/rapport/cover.pdf rename to source/rapport/media/cover.pdf diff --git a/source/rapport/cover.png b/source/rapport/media/cover.png similarity index 100% rename from source/rapport/cover.png rename to source/rapport/media/cover.png diff --git a/source/rapport/groenkaart-legende.png b/source/rapport/media/groenkaart-legende.png similarity index 100% rename from source/rapport/groenkaart-legende.png rename to source/rapport/media/groenkaart-legende.png diff --git a/source/rapport/landbouw-legende.png b/source/rapport/media/landbouw-legende.png similarity index 100% rename from source/rapport/landbouw-legende.png rename to source/rapport/media/landbouw-legende.png diff --git a/source/rapport/landgebruik-legende.png b/source/rapport/media/landgebruik-legende.png similarity index 100% rename from source/rapport/landgebruik-legende.png rename to source/rapport/media/landgebruik-legende.png diff --git a/source/zenodo/update_open_area.R b/source/zenodo/update_open_area.R index 357c908..4cd5b8a 100644 --- a/source/zenodo/update_open_area.R +++ b/source/zenodo/update_open_area.R @@ -21,7 +21,7 @@ here("data", "open_area") |> record = myrec, delete_latest_files = TRUE, publish = FALSE ) -> myrec myrec$setPublicationDate(Sys.Date()) -myrec$setVersion("2023.01") +myrec$setVersion("2023.02") myrec <- zenodo$depositRecord(myrec, publish = TRUE) myrec <- zenodo$getDepositionById("5814901") @@ -33,5 +33,5 @@ here("data", "sampling") |> record = myrec, delete_latest_files = TRUE, publish = FALSE ) -> myrec myrec$setPublicationDate(Sys.Date()) -myrec$setVersion("2023.01") +myrec$setVersion("2023.02") myrec <- zenodo$depositRecord(myrec, publish = TRUE)