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I am encountering a problem when converting Siemens .dat files to .mrd using siemens_to_ismrmrd. Below is the full output: #133

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cenarius1985 opened this issue Aug 15, 2024 · 6 comments
Open

I am encountering a problem when converting Siemens .dat files to .mrd using siemens_to_ismrmrd. Below is the full output: #133

cenarius1985 opened this issue Aug 15, 2024 · 6 comments

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@cenarius1985
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I am encountering a problem when converting Siemens .dat files to .mrd using siemens_to_ismrmrd. Below is the full output:

Software version: syngo MR XA50
Protocol name: Initialized by sequence
Detected Numaris/X version: 50
Disabling parsing of syncdata due to incompatibility!
Dwell time: 4000
Using parameter XSL: IsmrmrdParameterMap_Siemens_NX.xsl
Study time: 18:00:39
wrote scan : 1000
Last scan reached...
WARNING: Unexpected number of mystery bytes detected: 32
ParcFileEntries[0].off_ = 10240
ParcFileEntries[0].len_ = 42822560
siemens_dat.tellg() = 42832768
Please check the result.
This problem causes an error in the transformation of .dat files, and the error is displayed on the screen as shown above.
@cenarius1985
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Processing file C:\Users\Ferna\Documentos\GitHub\siemens_to_ismrmrd\Conversion_dat_mrd\meas_MID00121_FID16418_gre_TE4_18_32_PROMEDIOS.dat...
Siemens file is: /flywheel/v0/input/dat/meas_MID00121_FID16418_gre_TE4_18_32_PROMEDIOS.dat

Converting measurement 1 into file /flywheel/v0/output/meas_MID00121_FID16418_gre_TE4_18_32_PROMEDIOS.mrd in group dataset

Using parameter map: IsmrmrdParameterMap_Siemens.xml
This file contains 2 measurement(s).
VD line file detected.
Protocol name [1]: AdjCoilSens
Protocol name [2]: gre_TE4.18-32 PROMEDIOS
Number of parameter buffers: 7
Buffer Name: Config
Buffer Name: Dicom
Buffer Name: Meas
Buffer Name: MeasYaps
Buffer Name: Phoenix
Buffer Name: Protocol
Buffer Name: Spice
Trajectory is: 1
Failed to find YAPS.lFirstFourierLine array
Failed to find YAPS.lFirstFourierPartition array
center_line = 16
center_partition = 16
Failed to find MEAS.sProtConsistencyInfo.tBaselineString/tMeasuredBaselineString
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.21.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.21.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.21.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.21.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.21.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.21.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.22.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.22.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.22.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.22.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.22.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.22.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.23.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.23.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.23.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.23.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.23.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.23.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.24.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.24.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.24.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.24.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.24.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.24.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.25.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.25.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.25.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.25.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.25.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.25.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.26.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.26.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.26.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.26.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.26.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.26.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.27.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.27.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.27.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.27.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.27.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.27.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.28.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.28.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.28.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.28.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.28.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.28.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.29.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.29.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.29.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.29.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.29.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.29.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.30.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.30.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.30.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.30.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.30.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.30.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.31.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.31.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.31.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.31.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.31.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.31.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.32.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.32.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.32.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.32.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.32.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.32.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.33.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.33.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.33.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.33.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.33.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.33.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.34.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.34.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.34.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.34.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.34.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.34.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.35.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.35.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.35.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.35.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.35.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.35.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.36.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.36.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.36.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.36.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.36.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.36.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.37.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.37.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.37.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.37.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.37.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.37.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.38.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.38.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.38.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.38.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.38.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.38.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.39.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.39.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.39.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.39.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.39.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.39.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.40.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.40.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.40.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.40.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.40.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.40.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.41.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.41.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.41.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.41.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.41.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.41.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.42.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.42.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.42.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.42.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.42.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.42.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.43.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.43.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.43.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.43.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.43.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.43.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.44.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.44.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.44.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.44.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.44.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.44.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.45.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.45.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.45.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.45.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.45.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.45.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.46.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.46.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.46.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.46.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.46.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.46.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.47.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.47.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.47.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.47.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.47.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.47.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.48.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.48.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.48.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.48.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.48.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.48.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.49.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.49.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.49.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.49.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.49.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.49.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.50.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.50.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.50.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.50.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.50.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.50.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.51.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.51.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.51.sCoilElementID.tElement not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.51.lElementSelected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.51.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.51.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.52.sCoilElementID.tCoilID not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.52.sCoilElementID.lCoilCopy not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.52.sCoilElementID.tElement not found.
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Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.62.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.62.lADCChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.63.sCoilElementID.tCoilID not found.
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Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.63.lRxChannelConnected not found.
Search path: MEAS.sCoilSelectMeas.aRxCoilSelectData.0.asList.63.lADCChannelConnected not found.
Baseline:
Software version: syngo MR XA50
Protocol name: Initialized by sequence
Detected Numaris/X version: 50
Disabling parsing of syncdata due to incompatibility!
Dwell time: 4000
Using parameter XSL: IsmrmrdParameterMap_Siemens_NX.xsl
Study time: 18:00:39
wrote scan : 1000
Last scan reached...
WARNING: Unexpected number of mystery bytes detected: 32
ParcFileEntries[0].off_ = 10240
ParcFileEntries[0].len_ = 42822560
siemens_dat.tellg() = 42832768
Please check the result.
Presione una tecla para continuar . . .

@rajramasawmy
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Did it convert the data? (i.e. produce a .h5 or .mrd file?)
There are some known bugs with the converter
1 - there are some "leftover" bytes
2- "sync" data does not get mapped in XA line data (though the acquisition header will have the physio trigger time)

BUT it will give data out, it just makes errors..

@cenarius1985
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Hi, thanks for your answer. The problem persists. The file types are .mrd and .h5. The matrix is not coherent, and the transformat, my code: @echo off
REM Directory for input and output files
set input_dir=C:\Users\Ferna\Documentos\GitHub\siemens_to_ismrmrd\Conversion_dat_mrd
set output_dir=C:\Users\Ferna\Documentos\GitHub\siemens_to_ismrmrd\Conversion_dat_mrd

REM Iterate over all .dat files in the input directory
for %%f in (%input_dir%*.dat) do (
REM Extract the filename without the extension
set "filename=%%~nf"
echo Processing file %%f...

REM Convert file using siemens_to_ismrmrd
docker run --rm ^
    -v %input_dir%:/input ^
    -v %output_dir%:/output ^
    siemenstoismrmrd_fixed siemens_to_ismrmrd ^
    -f /input/%%~nf.dat ^
    -o /output/%%~nf.h5 ^
    --debug

)

pause

@cenarius1985
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this problem is solved, buil a new image docker, change ubuntu version and install other libraries, # Primera fase: ismrmrd_base
FROM ubuntu:22.04 as ismrmrd_base

ARG DEBIAN_FRONTEND=noninteractive
ENV TZ=America/Chicago

Instalar las dependencias necesarias, incluidas las bibliotecas de desarrollo y herramientas de compilación

RUN apt-get update && apt-get install -y git cmake g++ libhdf5-dev libxml2-dev libxslt1-dev libboost-all-dev xsdcxx libxerces-c-dev libtinyxml-dev libpugixml-dev libhdf5-serial-dev h5utils hdf5-tools

RUN mkdir -p /opt/code

Crear directorio para siemens_to_ismrmrd y copiar el contenido

RUN mkdir -p /opt/code/siemens_to_ismrmrd
COPY . /opt/code/siemens_to_ismrmrd/

Clonar y compilar la biblioteca ISMRMRD

RUN cd /opt/code &&
git clone https://github.com/ismrmrd/ismrmrd.git &&
cd ismrmrd &&
git checkout $(cat /opt/code/siemens_to_ismrmrd/dependencies/ismrmrd | xargs) &&
mkdir build &&
cd build &&
cmake .. &&
make -j $(nproc) &&
make install

Compilar el convertidor siemens_to_ismrmrd

RUN cd /opt/code/siemens_to_ismrmrd &&
mkdir build &&
cd build &&
cmake .. &&
make -j $(nproc) &&
make install

Crear un archivo comprimido con las bibliotecas de ISMRMRD para la siguiente fase

RUN cd /usr/local/lib && tar -czvf libismrmrd.tar.gz libismrmrd*

Segunda fase: imagen ligera con las dependencias mínimas

FROM ubuntu:22.04

Instalar las dependencias mínimas necesarias para ejecutar el convertidor y las bibliotecas ISMRMRD

RUN apt-get update && apt-get install -y --no-install-recommends libxslt1.1 libhdf5-dev libxerces-c-dev libboost-all-dev libpugixml1v5 && apt-get clean && rm -rf /var/lib/apt/lists/*

Copiar el binario de siemens_to_ismrmrd y las bibliotecas de la fase anterior

COPY --from=ismrmrd_base /usr/local/bin/siemens_to_ismrmrd /usr/local/bin/siemens_to_ismrmrd
COPY --from=ismrmrd_base /usr/local/lib/libismrmrd.tar.gz /usr/local/lib/

Descomprimir las bibliotecas de ISMRMRD y ejecutar ldconfig para actualizar las referencias de las bibliotecas

RUN cd /usr/local/lib && tar -zxvf libismrmrd.tar.gz && rm libismrmrd.tar.gz && ldconfig

@cenarius1985 cenarius1985 reopened this Sep 9, 2024
@cenarius1985
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The problem persistent

@cenarius1985
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any news on this matter

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@rajramasawmy @cenarius1985