kinasesubstraterelations.qmd

---
title: "Kinase-substrate relations"
author: "Cox Lab"
format: 
  html:
    toc: true
    toc-depth: 4
    toc-expand: false
    number-sections: true
    number-depth: 4
editor: source
date: today
bibliography: references.bib
---

# General

-   **Type:** - Matrix Processing
-   **Heading:** - Modifications
-   **Source code:** [KinaseSubstrateRelations.cs](https://github.com/JurgenCox/perseus-plugins/blob/master/PerseusPluginLib/Mods/KinaseSubstrateRelations.cs)

# Brief description

Kinase-substrate relations are read from PSP files and attached as annotation based on UniProt identifiers and sequence windows.

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# Parameters

## Uniprot column

Selected text column that contains the Uniprot identifiers (default: first text column in the matrix).

## Sequence window

Selected text column that contains the sequence windows around the sites (default: first text column in the matrix).

# Parameter window

![](images/modifications-kinase-substrate_relations-edited-01.png)