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Keywords.txt
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---------------------------------------------------------------------------
HTS-CSRS Knowledgebase:
High-throughput Sequencing Computational Standards for Regulatory Sciences; Washington DC, USA
---------------------------------------------------------------------------
Description: Controlled vocabulary of keywords
Name: keywlist.txt
Release: 2016-08-31
---------------------------------------------------------------------------
This document lists the keywords and categories used in the HTS-CSRS
knowledgebase (HTS-CSRS Biocompute object). The keywords are classified into
the following 10 categories:
* Biological process
* Cellular component
* Coding sequence diversity
* Developmental stage
* Disease
* Domain
* Ligand
* Molecular function
* PTM
* Technical term
The definition of the keywords and categories usage as well as other
information is provided in the following format:
--------- --------------------------- ------------------------------
Line code Content Occurrence in an entry
--------- --------------------------- ------------------------------
ID Identifier (keyword) Once; starts a keyword entry
IC Identifier (category) Once; starts a category entry
BO Biocompute object ID (BO-xxxx) Once
DE Definition Once or more
SY Synonyms Optional; once or more
GO Gene ontology (GO) mapping Optional; once or more
DO Disease Ontology (DO) mapping Optional; once or more
HI Hierarchy Optional; once or more
WW Relevant WWW site Optional; once or more
CA Category Once per keyword entry;
absent in category entries
// Terminator Once; ends an entry
___________________________________________________________________________
IC Disease.
BO BO_000000
DE Keywords assigned to biocompute because they are involved in a specific
DE disease.
//
ID Disease mutation.
BO KW-0225
DE Protein for which at least one variant, responsible for a disease, is
DE described in the feature table of its Swiss-Prot entry.
HI Disease: Disease mutation.
CA Disease.