diff --git a/R/blowflies.R b/R/blowflies.R index 59a16503..e9878708 100644 --- a/R/blowflies.R +++ b/R/blowflies.R @@ -45,7 +45,7 @@ ##' ##' \Wood2010 ##' -##' \Gurney1980 +##' \Gurney1980a ##' ##' \Brillinger1980 ##' diff --git a/R/bsmc2.R b/R/bsmc2.R index 031868d1..cf4372ba 100644 --- a/R/bsmc2.R +++ b/R/bsmc2.R @@ -43,11 +43,8 @@ ##' @author Michael Lavine, Matthew Ferrari, Aaron A. King, Edward L. Ionides ##' ##' @references -##' Liu, J. and M. West. -##' Combining Parameter and State Estimation in Simulation-Based Filtering. -##' In A. Doucet, N. de Freitas, and N. J. Gordon, editors, -##' Sequential Monte Carlo Methods in Practice, pages 197-224. -##' Springer, New York, 2001. +##' +##' \Liu2001b NULL ## In annotation, L&W AGM == Liu & West "A General Algorithm" diff --git a/man/blowflies.Rd b/man/blowflies.Rd index 65e4a139..38f10eac 100644 --- a/man/blowflies.Rd +++ b/man/blowflies.Rd @@ -82,7 +82,7 @@ plot(blowflies2()) \Wood2010 -\Gurney1980 +\Gurney1980a \Brillinger1980 } diff --git a/man/bsmc2.Rd b/man/bsmc2.Rd index 006ea105..bb92d308 100644 --- a/man/bsmc2.Rd +++ b/man/bsmc2.Rd @@ -110,11 +110,7 @@ To circumvent this problem, use the \code{\link[=pomp]{cdir}} and \code{\link[=p } \references{ -Liu, J. and M. West. -Combining Parameter and State Estimation in Simulation-Based Filtering. -In A. Doucet, N. de Freitas, and N. J. Gordon, editors, -Sequential Monte Carlo Methods in Practice, pages 197-224. -Springer, New York, 2001. +\Liu2001b } \seealso{ More on Bayesian methods: diff --git a/man/macros/citations.Rd b/man/macros/citations.Rd index e88dc281..2ddab91f 100644 --- a/man/macros/citations.Rd +++ b/man/macros/citations.Rd @@ -24,10 +24,14 @@ \newcommand{\Evensen2009}{G. Evensen. \emph{Data assimilation: the ensemble Kalman filter}. Springer-Verlag, 2009.} -\newcommand{\Gurney1980}{W.S.C. Gurney, S.P. Blythe, and R.M. Nisbet. Nicholson's blowflies revisited. \emph{Nature} \bold{287}, 17--21, 1980.} +\newcommand{\Gurney1980a}{W.S.C. Gurney, S.P. Blythe, and R.M. Nisbet. Nicholson's blowflies revisited. \emph{Nature} \bold{287}, 17--21, 1980.} + +\newcommand{\Harrell1982}{F. E. Harrell and C. E. Davis. A new distribution-free quantile estimator. \emph{Biometrika} \bold{69}, 635--640, 1982.} \newcommand{\He2010}{D. He, E.L. Ionides, and A.A. King. Plug-and-play inference for disease dynamics: measles in large and small populations as a case study. \emph{Journal of the Royal Society Interface} \bold{7}, 271--283, 2010.} +\newcommand{\Hyndman1996}{R. J. Hyndman and Y. Fan. Sample quantiles in statistical packages. \emph{American Statistician} \bold{50}, 361--365, 1996.} + \newcommand{\Ionides2011}{E.L. Ionides. Discussion of \dQuote{Feature matching in time series modeling} by Y. Xia and H. Tong. \emph{Statistical Science} \bold{26}, 49--52, 2011.} \newcommand{\Ionides2015}{E.L. Ionides, D. Nguyen, Y. Atchadé, S. Stoev, and A.A. King. Inference for dynamic and latent variable models via iterated, perturbed Bayes maps. \emph{Proceedings of the National Academy of Sciences} \bold{112}, 719--724, 2015.} @@ -48,7 +52,7 @@ \newcommand{\Kucherenko2005}{S. Kucherenko and Y. Sytsko. Application of deterministic low-discrepancy sequences in global optimization. \emph{Computational Optimization and Applications} \bold{30}, 297--318, 2005. \doi{10.1007/s10589-005-4615-1}.} -\newcommand{\Liu2001}{J. Liu and M. West. Combining Parameter and State Estimation in Simulation-Based Filtering. In A. Doucet, N. de Freitas, and N. J. Gordon, (eds.), \emph{Sequential Monte Carlo Methods in Practice}, pp. 197--224. Springer, New York, 2001.} +\newcommand{\Liu2001b}{J. Liu and M. West. Combining parameter and state estimation in simulation-based filtering. In A. Doucet, N. de Freitas, and N. J. Gordon, (eds.), \emph{Sequential Monte Carlo Methods in Practice}, pp. 197--224. Springer, New York, 2001.} \newcommand{\London1973}{W. P. London and J. A. Yorke, Recurrent outbreaks of measles, chickenpox and mumps: I. Seasonal variation in contact rates. \emph{American Journal of Epidemiology} \bold{98}, 453--468, 1973.} @@ -75,7 +79,3 @@ \newcommand{\Wood2010}{S. N. Wood Statistical inference for noisy nonlinear ecological dynamic systems. \emph{Nature} \bold{466}, 1102--1104, 2010.} \newcommand{\Xia2011}{Y. Xia and H. Tong. Feature matching in time series modeling. \emph{Statistical Science} \bold{26}, 21--46, 2011.} - -\newcommand{\Hyndman1996}{R. J. Hyndman and Y. Fan. Sample quantiles in statistical packages. \emph{American Statistician} \bold{50}, 361--365, 1996.} - -\newcommand{\Harrell1982}{F. E. Harrell and C. E. Davis. A new distribution-free quantile estimator. \emph{Biometrika} \bold{69}, 635--640, 1982.}