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.Rhistory
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```{r, include=FALSE}
library(tidyverse)
library(reshape2)
library(ggplot2)
getwd()
library(tidyverse)
library(tidyverse)
library(reshape2)
install.packages("tidyverse", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(tidyverse)
install.packages("tidyverse", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(reshape2)
library(ggplot2)
install.packages("ggplot", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(tidyverse)
library(reshape2)
library(ggplot2)
library("yaml", lib.loc="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library("vegan", lib.loc="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library("vegan3d", lib.loc="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library("shiny", lib.loc="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library("MASS", lib.loc="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library("markdown", lib.loc="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library("magrittr", lib.loc="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library("magrittr", lib.loc="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library("LMERConvenienceFunctions", lib.loc="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library("lme4", lib.loc="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library("knitr", lib.loc="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library("dplyr", lib.loc="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
detach("package:dplyr", unload=TRUE)
library("dplyr", lib.loc="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library("vegan", lib.loc="~/Library/R/3.3/library")
library("vegan3d", lib.loc="~/Library/R/3.3/library")
library("tidyverse", lib.loc="~/Library/R/3.3/library")
library("rmarkdown", lib.loc="~/Library/R/3.3/library")
library("markdown", lib.loc="~/Library/R/3.3/library")
library("knitr", lib.loc="~/Library/R/3.3/library")
library("ggplot2movies", lib.loc="~/Library/R/3.3/library")
library("corrplot", lib.loc="~/Library/R/3.3/library")
detach("package:ggplot2movies", unload=TRUE)
install.packages("ggplot", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
install.packages("ggplot2", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(tidyverse)
library(reshape2)
library(ggplot2)
getwd()
install.packages("gglot2", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
install.packages("ggplot2", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(tidyverse)
install.packages("tidyverse", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
install.packages("tidyverse", lib = "/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(tidyverse)
library(tidyverse)
install.packages("tidyverse", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
knitr::opts_chunk$set(cache=TRUE, tidy=TRUE,error = TRUE, eval = TRUE, message = FALSE, warning = FALSE, rows.print=5, cols.min.print=4)
knitr::opts_chunk$set(cache=TRUE, tidy=TRUE,error = TRUE, eval = TRUE, message = FALSE, warning = FALSE, rows.print=5, cols.min.print=4)
library(dplyr) ## for data wrangling - %>% function
install.packages("dplyr", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(dplyr) ## for data wrangling - %>% function
library(dplyr) ## for data wrangling - %>% function
install.packages("dplyr", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(reshape2) ##melt and cast data
library(tidyr) # 'separate' function
install.packages("tidyr", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
y
install.packages("tidyr", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(readxl) #read xlsx files into r on mac computer
install.packages("readxl", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(dplyr) ## for data wrangling - %>% function
library(reshape2) ##melt and cast data
library(tidyr) # 'separate' function
library(readxl) #read xlsx files into r on mac computer
install.packages("readxl", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(readxl) #read xlsx files into r on mac computer
library(vegan) # dissimilarity matrix, permanova functions
library(dplyr) ## for data wrangling - %>% function
library(reshape2) ##melt and cast data
library(tidyr) # 'separate' function
library(readxl) #read xlsx files into r on mac computer
library(vegan) # dissimilarity matrix, permanova functions
library(tidyverse)
install.packages("tidyverse", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
install.packages("tidyverse", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(dplyr) ## for data wrangling - %>% function
library(reshape2) ##melt and cast data
library(tidyr) # 'separate' function
library(readxl) #read xlsx files into r on mac computer
library(vegan) # dissimilarity matrix, permanova functions
library(tidyverse)
install.packages("tidyverse", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
install.packages("tidyverse", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
install.packages("tidyverse", lib = "/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(tidyverse)
library(dplyr) ## for data wrangling - %>% function
library(reshape2) ##melt and cast data
library(tidyr) # 'separate' function
library(readxl) #read xlsx files into r on mac computer
library(vegan) # dissimilarity matrix, permanova functions
library(tidyverse)
install.packages("tidyverse", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
```{r Load preliminary packages, include=FALSE}
library(dplyr) ## for data wrangling - %>% function
library(dplyr) ## for data wrangling - %>% function
library(dplyr) ## for data wrangling - %>% function
install.packages("dplyr", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
install.packages("readxl", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
install.packages("vegan", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(dplyr) ## for data wrangling - %>% function
install.packages("dplyr", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(dplyr) ## for data wrangling - %>% function
library(reshape2) ##melt and cast data
library(tidyr) # 'separate' function
install.packages("tidyr", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
install.packages("tidyverse")
install.packages("tidyverse")
install.packages("tidyr")
devtools::install_github("tidyverse/tidyr")
library(tidyr) # 'separate' function
library(dplyr) ## for data wrangling - %>% function
library(reshape2) ##melt and cast data
library(tidyr) # 'separate' function
library(readxl) #read xlsx files into r on mac computer
library(vegan) # dissimilarity matrix, permanova functions
library(tidyverse)
install.packages("tidyverse")
install.packages("tidyverse")
install.packages("tidyverse")
install.packages("tidyverse")
library(dplyr) ## for data wrangling - %>% function
library(reshape2) ##melt and cast data
library(tidyr) # 'separate' function
library(readxl) #read xlsx files into r on mac computer
library(vegan) # dissimilarity matrix, permanova functions
library(tidyverse)
library(dplyr) ## for data wrangling - %>% function
library(reshape2) ##melt and cast data
library(tidyr) # 'separate' function
library(readxl) #read xlsx files into r on mac computer
library(vegan) # dissimilarity matrix, permanova functions
#library(tidyverse)
library(stringr)
library(ggplot2) # plotting
install.packages("ggplot2", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
install.packages("magrittr", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
install.packages("cowplot", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
library(dplyr) ## for data wrangling - %>% function
library(reshape2) ##melt and cast data
library(tidyr) # 'separate' function
library(readxl) #read xlsx files into r on mac computer
library(vegan) # dissimilarity matrix, permanova functions
#library(tidyverse)
library(stringr)
library(ggplot2) # plotting
install.packages("gglot2", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")