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NEWS.md

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pksensi 1.2.3

  • Syntax update (check & install)
  • Fix bug (check)
  • Fix MCSim installation issue (#9)
  • Remove dependent: magrittr, reshape2
  • New function: set_rtools40_path()
  • Add feature to run simple simulation (generate_infile())

pksensi 1.2.2

  • Add more flexible parallel method (solve_mcsim())
  • Fix error in previous version

pksensi 1.2.1

pksensi 1.2.0

  • update the route to load example model
  • update the default MCSim version to 6.2.0
  • Switch the contact mail to [email protected]

pksensi 1.1.7

  • Suggested to use Rtools40
  • Added parallel method in solve_mcsim()
  • Fixed bug in heat_check()
  • Added message of display info in heat_check() function
  • Improved heat_check() to display the indices based on the setting cut-off

pksensi 1.1.6

  • Improved heat_check() to only show influential parameters as default
  • Updated check() to return the SI and CI in a list

pksensi 1.1.5

  • solve_mcsim(): extend the flexible for the model in subfolder
  • Update the vignettes (add deSolve modeling example)

pksensi 1.1.4

  • Replace SE to NSE in heat_check()
  • Update manual

pksensi 1.1.3

  • Update solve_fun() to run deSolve with Pure R code
  • set default mxstep = 5000 in mcsim_install()

pksensi 1.1.2

  • Add timer in solve_fun()
  • Add default MCSim version = '6.1.0' in compile_model()
  • Update pksim(): Can customize xlab and ylab
  • Update pbtk1cpt model: Add body weight
  • Update vignettes
  • Fix bug: Create .dll in win10 through compile_model()
  • Fix bug: plot() cannot display variable name when using character
  • Revise the mcsim_version() for Windows OS

pksensi 1.1.1

Fix Bug:

  • Add rtol and atol in solve_mcsim()
  • Switch default compiler from Clang to GCC in MacOS
  • Fix the mName problem under Windows environment in solve_mcsim()

Update vignette

  • Remind to set the mxstep to 5000 in APAP-PBPK example
  • Add note to APAP vignette (Set atol and rtol)

Update function

  • mcsim_version() can work in MCSim_under_R
  • Stop the function when compile error in compile_model()
  • Revise the default name of output to "simmc.out" and "setpts.out" in solve_mcsim()

pksensi 1.1.0

Fix Bug:

  • Used single time point in solve_mcsim()

Update function:

Installation

  • Update the default MCSim version to version = 6.1.0 in install_mcsim()
  • Adopt the name of model file ("model.R.exe") to MCSim_under_R project

Modeling

  • Change assignment n to monte_carlo in solve_mcsim()
  • Revise the default name of output to "sim.out" and "setpoint.out" in solve_mcsim()
  • Add solving message to track time spend in solve_mcsim()
  • Add assignment tell = T to automatically combine the output y in decoupling simulation x in solve_fun() and solve_mcsim()

Plot

  • Transfer the log-transformed value to natural scale in pksim()
  • Revise the discrete time condition to length(times) < 16 in heat_check()

pksensi 1.0.1

New vignette:

  • Add "PBTK 1-compartment model"
  • Add "Acetaminophen-PBPK model"

New example:

  • Update example in solve_mcsim()

New function:

  • Add pbtk1cpt_model()
  • Add pbpk_apap_model()
  • Add function mcsim_version()

NEW dataset:

  • Add APAP dataset

Fix Bug:

  • Fix the order argument in heat_check()
  • Add message in generate_infile()

Update function:

  • Remove argument params in solve_fun()
  • No need to define infile.name and outfile.name in solve_mcsim()

Change:

  • Change function's name install_mcsim() to mcsim_install()

pksensi 1.0.0

  • Initial release in CRAN