diff --git a/.github/workflows/container-ci.yml b/.github/workflows/container-ci.yml index 94e0d04..17b428c 100644 --- a/.github/workflows/container-ci.yml +++ b/.github/workflows/container-ci.yml @@ -52,5 +52,6 @@ jobs: with: context: . push: true + platforms: linux/amd64,linux/arm64 tags: ${{ steps.metadata.outputs.tags }} labels: ${{ steps.metadata.outputs.labels }} \ No newline at end of file diff --git a/main.nf b/main.nf index 43ca9d0..558ed81 100644 --- a/main.nf +++ b/main.nf @@ -35,10 +35,7 @@ workflow SAMPLESHEET_SPLIT { process synapse_get { - conda "bioconda::synapseclient=2.6.0" - container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/synapseclient:2.6.0--pyh5e36f6f_0' : - 'quay.io/biocontainers/synapseclient:2.6.0--pyh5e36f6f_0' }" + container "ghcr.io/ncihtan/nf-imagecleaner" tag "${meta.entityid}" @@ -65,8 +62,7 @@ process synapse_get { } process cds_upload { - conda "bioconda::awscli=1.18.69" - container "local-aws-cli-v2" + container "ghcr.io/ncihtan/nf-imagecleaner" tag "${meta.entityid}"