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biopsy.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/obi/dev/modules/biopsy.owl#"
xml:base="http://purl.obolibrary.org/obo/obi/dev/modules/biopsy.owl"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/obi/dev/modules/biopsy.owl"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000234 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000234"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/OBI_0000293 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000293"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000299 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000299"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/OBI_0000436 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000436"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000873 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000873"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000968 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000968"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000982 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000982"/>
<!-- http://purl.obolibrary.org/obo/OBI_0002650 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002650">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0600005"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000968"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
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</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000873"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112>Biopsy of a potentially cancerous mole.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A specimen collection that obtains a sample of tissue or cell from a living multicellular organism body for diagnostic purposes by means intended to be minimally invasive.</obo:IAO_0000115>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<obo:IAO_0000117>Nicole Vasilevsky</obo:IAO_0000117>
<obo:IAO_0000119>https://en.wikipedia.org/wiki/Biopsy</obo:IAO_0000119>
<rdfs:label>biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002651 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002651">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002654"/>
<obo:IAO_0000112>Image-guided needle biopsy allows a doctor to biopsy suspicious areas that aren't readily seen or felt through skin, such as in a prostate gland.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A biopsy which uses an imaging procedure to guide a needle biopsy.</obo:IAO_0000115>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<obo:IAO_0000118>image guided needle biopsy</obo:IAO_0000118>
<obo:IAO_0000118>image-guided biopsy</obo:IAO_0000118>
<obo:IAO_0000118>imaging guided biopsy</obo:IAO_0000118>
<obo:IAO_0000119>https://www.mayoclinic.org/diseases-conditions/cancer/in-depth/biopsy/art-20043922</obo:IAO_0000119>
<rdfs:label>image guided biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002652 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002652">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002651"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000982"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112>A CT Guided Biopsy is a procedure performed by a radiologist to obtain a small tissue sample through a needle.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A needle biopsy guided by real-time computed tomography (CT) scan images.</obo:IAO_0000115>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<obo:IAO_0000118>CT Assisted Biopsy</obo:IAO_0000118>
<obo:IAO_0000118>CT Guided Biopsy</obo:IAO_0000118>
<obo:IAO_0000118>Computed Tomography Assisted Biopsy</obo:IAO_0000118>
<obo:IAO_0000118>Computed Tomography-Guided Needle Biopsy</obo:IAO_0000118>
<obo:IAO_0000119>http://purl.obolibrary.org/obo/NCIT_C137909</obo:IAO_0000119>
<rdfs:label>computed tomography assisted biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002653 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002653">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002651"/>
<obo:IAO_0000112>An ultrasound-guided needle biopsy uses sound waves to help locate a nodule or abnormality within the thyroid.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A needle biopsy guided by ultrasound visualization.</obo:IAO_0000115>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<obo:IAO_0000119>https://www.oncolink.org/cancer-treatment/procedures-diagnostic-tests/biopsy-procedures/ultrasound-guided-needle-biopsy</obo:IAO_0000119>
<rdfs:label>ultrasound-guided needle biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002654 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002654">
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<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000436"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112>A needle biopsy is often used on suspicious breast lumps and enlarged lymph nodes that a doctor can feel through a patient's skin.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A biopsy that uses a hollow needle to extract cells.</obo:IAO_0000115>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<obo:IAO_0000119>https://www.mayoclinic.org/tests-procedures/needle-biopsy/about/pac-20394749</obo:IAO_0000119>
<rdfs:label>needle biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002655 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002655">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002654"/>
<obo:IAO_0000112>A fine needle aspiration biopsy is commonly performed in order to test for cancer.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A biopsy that uses a thin needle to extract cells.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000118>FNA</obo:IAO_0000118>
<obo:IAO_0000118>FNAB</obo:IAO_0000118>
<obo:IAO_0000119>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5769667/</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<rdfs:label>fine needle aspiration biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002656 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002656">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002654"/>
<obo:IAO_0000112>A core needle biopsy can remove more tissue than a fine needle biopsy, and therefore can provide more information about the cells and tissue removed.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A biopsy that uses a hollow tube to collect a core of tissue.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Stoeckert, Helena Ellis, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000118>CNB</obo:IAO_0000118>
<obo:IAO_0000119>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5769667/</obo:IAO_0000119>
<obo:IAO_0000234>NCI BBRB</obo:IAO_0000234>
<rdfs:label>core needle biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002657 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002657">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002650"/>
<obo:IAO_0000112>Surgical biopsy may be required to collect hard-to-reach tissue.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A biopsy involving a surgical incision into an organism to access the biopsy material.</obo:IAO_0000115>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<obo:IAO_0000118>excisional biopsy</obo:IAO_0000118>
<obo:IAO_0000118>open biopsy</obo:IAO_0000118>
<obo:IAO_0000119>https://www.mayoclinic.org/diseases-conditions/cancer/in-depth/biopsy/art-20043922</obo:IAO_0000119>
<rdfs:label>surgical biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002660 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002660">
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0010414"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112>The makeup of fat in the abdominal wall can be investigated by fat biopsy.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A biopsy involving the collection of a small part of the abdominal wall fat pad.</obo:IAO_0000115>
<obo:IAO_0000117>Nicole Vasilevsky, Damion Dooley</obo:IAO_0000117>
<obo:IAO_0000118>abdominal wall biopsy</obo:IAO_0000118>
<obo:IAO_0000118>fat biopsy</obo:IAO_0000118>
<obo:IAO_0000119>https://www.ucsfbenioffchildrens.org/tests/003841.html</obo:IAO_0000119>
<rdfs:label>abdominal wall fat pad biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002661 -->
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002415"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112>A mouse tail biopsy was performed to collect material for DNA extraction.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A biopsy involving the collection of the tip of a mamallian tail.</obo:IAO_0000115>
<obo:IAO_0000117>Nicole Vasilevsky, Damion Dooley</obo:IAO_0000117>
<obo:IAO_0000118>snip</obo:IAO_0000118>
<obo:IAO_0000119>http://web.jhu.edu/animalcare/policies/Tail%20Biopsy%20of%20Mice.pdf</obo:IAO_0000119>
<rdfs:label>tail biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002662 -->
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002371"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112>A bone marrow biopsy removes bone with the marrow inside to look at under a microscope</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A biopsy where a small amount of bone and a small amount of fluid and bone marrow are collected.</obo:IAO_0000115>
<obo:IAO_0000117>Nicole Vasilevsky</obo:IAO_0000117>
<obo:IAO_0000119>http://www.webmd.com/cancer/bone-marrow-aspiration-and-biopsy</obo:IAO_0000119>
<rdfs:label>bone marrow biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002663 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002663">
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</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112>A three or four millimeter punch is used in s skinpunch biopsy proceedure.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A biopsy that involves the collection of a cylinder of skin (including epidermis, dermis and superficial fat) using a punch tool.</obo:IAO_0000115>
<obo:IAO_0000117>Nicole Vasilevsky</obo:IAO_0000117>
<obo:IAO_0000118>punch biopsy; skin biopsy</obo:IAO_0000118>
<obo:IAO_0000119>http://healthlibrary.epnet.com/GetContent.aspx?token=b93d114e-5009-4f6a-9917-6c594254fcc7&chunkiid=14861</obo:IAO_0000119>
<rdfs:label>skinpunch biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0002679 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002679"/>
<!-- http://purl.obolibrary.org/obo/OBI_0002745 -->
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002679"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112>A vacuum assisted biopsy can remove an area of abnormal cells from breast tissue.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A biopsy performed with a needle augmented with a vacuum device.</obo:IAO_0000115>
<obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
<obo:IAO_0000118>VAB</obo:IAO_0000118>
<obo:IAO_0000119>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5769667/</obo:IAO_0000119>
<rdfs:label>vacuum-assisted biopsy</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0600005 -->
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<!-- http://purl.obolibrary.org/obo/UBERON_0000465 -->
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<!-- http://purl.obolibrary.org/obo/UBERON_0002199 -->
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<!-- http://purl.obolibrary.org/obo/UBERON_0002371 -->
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<!-- http://purl.obolibrary.org/obo/UBERON_0002415 -->
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<!-- http://purl.obolibrary.org/obo/UBERON_0010414 -->
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<!-- Generated by the OWL API (version 4.5.25) https://github.com/owlcs/owlapi -->