From f616ecf1b07266bd32aff86d6abb189fdd0c4b7e Mon Sep 17 00:00:00 2001 From: Sebastian Duesing <66700705+sebastianduesing@users.noreply.github.com> Date: Thu, 8 Aug 2024 14:33:53 -0500 Subject: [PATCH] Fix cyclic immunofluorescence assay spelling --- src/ontology/modules/assays.owl | 2 +- src/ontology/templates/assays.tsv | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/src/ontology/modules/assays.owl b/src/ontology/modules/assays.owl index 59254ba4..957535ed 100644 --- a/src/ontology/modules/assays.owl +++ b/src/ontology/modules/assays.owl @@ -19486,7 +19486,7 @@ PMID:29993362 https://github.com/obi-ontology/obi/issues/1243 CFDE-LINCS - cyclic immunoflouroescence assay + cyclic immunofluoroescence assay diff --git a/src/ontology/templates/assays.tsv b/src/ontology/templates/assays.tsv index 47c9115b..28707351 100644 --- a/src/ontology/templates/assays.tsv +++ b/src/ontology/templates/assays.tsv @@ -414,7 +414,7 @@ OBI:0002965 landmark transcript profiling assay L1000 mRNA profiling assay A t OBI:0002966 microenvironment microarray assay MEMA assay A type of cytometry assay where cells are incubated for three days with a standardized set of extracellular matrix proteins in combination with various ligands creating varying microenvironment perterbations for the cells. Immunofluorescent imaging of cells is used to measure features such as morphology, metabolism, cell cycle, and nuclear activity. PMID:29199020 Michelle Giglio|Suvarna Nadendla|Rebecca Jackson CFDE-LINCS https://github.com/obi-ontology/obi/issues/1243 subclass cytometry assay OBI:0002967 microwestern meso-scale quantitative western blot assay A western blot assay that provides a high-throughput, sensitive, and quantitative measurement of proteins from numerous samples via an array of small western blots on a single sheet of nitrocellulose. PMID:28092050 Michelle Giglio|Suvarna Nadendla|Rebecca Jackson CFDE-LINCS https://github.com/obi-ontology/obi/issues/1243 subclass western blot assay OBI:0002968 positive/negative ion switching metabolite profiling assay positive/negative ion switching metabolomic assay A type of metabolic profiling assay which employs a hybrid dual quadrupole linear ion trap mass spectrometer for steady-state profiling of endogenous polar metabolites from organic extractions from biological samples. PMID:22498707 Michelle Giglio|Suvarna Nadendla|Rebecca Jackson CFDE-LINCS https://github.com/obi-ontology/obi/issues/1243 subclass metabolite profiling assay mass spectrometry assay -OBI:0002969 cyclic immunoflouroescence assay A type of microscopy assay resulting in highly multiplexed immunofluorescence imaging through sequential rounds of imaging followed by fluorophore inactivation. PMID:27925668|PMID:29993362 Michelle Giglio|Suvarna Nadendla|Rebecca Jackson CFDE-LINCS https://github.com/obi-ontology/obi/issues/1243 subclass microscopy assay +OBI:0002969 cyclic immunofluoroescence assay A type of microscopy assay resulting in highly multiplexed immunofluorescence imaging through sequential rounds of imaging followed by fluorophore inactivation. PMID:27925668|PMID:29993362 Michelle Giglio|Suvarna Nadendla|Rebecca Jackson CFDE-LINCS https://github.com/obi-ontology/obi/issues/1243 subclass microscopy assay OBI:0002970 multiplex bead-based protein state immunoassay A type of protein state assay in which antibodies attached to different colored beads and fluorescent reporter dye labels are used in a multiplexed mixture to assay for proteins in specific states. url:https://www.bio-rad.com/en-us/applications-technologies/multiplex-immunoassays?ID=LUSM0E8UU Michelle Giglio|Suvarna Nadendla|Rebecca Jackson CFDE-LINCS https://github.com/obi-ontology/obi/issues/1243 subclass protein state assay OBI:0002984 capture Hi-C assay cHi-C A Hi-C assay in which a selection step is performed on ligated fragments in order to enrich for ligation products containing specific regions of interest. PMID:29979818 PMID:29979818 Chromosome conformation capture (3C), coupled with next-generation sequencing (Hi-C), provides a means for deciphering not only the principles underlying genome folding and architecture, but more broadly, the role 3D chromatin structure plays in gene regulation and the replication and repair of DNA. Bonita Lam https://github.com/obi-ontology/obi/issues/1251 subclass Hi-C assay OBI:0002985 magnetic resonance imaging assay MRI An imaging assay in which nuclear magnetic resonance is used to produce information about the interior structure and composition of an input material entity. url:https://en.wikipedia.org/wiki/Magnetic_resonance_imaging Rebecca Jackson|Alexander D. Bartnik, ORCID:0000-0001-9676-7377|Lucas M. Serra, ORCID:0000-0002-2104-0568|Alexander D. Diehl, ORCID:0000-0001-9990-8331|Mackenzie T. Smith, ORCID:0000-0002-9821-4132|William D. Duncan, ORCID:0000-0001-9625-1899|Lauren M. Wishnie, ORCID:0000-0002-7245-3450 https://github.com/obi-ontology/obi/issues/1290 subclass imaging assay NMR instrument ('has role' some 'magnetic resonance imaging evaluant role') (realizes some (concretizes some 'magnetic resonance pulse sequence protocol'))