diff --git a/src/ontology/modules/specimen-assay-data.owl b/src/ontology/modules/specimen-assay-data.owl index 3e061896..ca01685b 100644 --- a/src/ontology/modules/specimen-assay-data.owl +++ b/src/ontology/modules/specimen-assay-data.owl @@ -223,7 +223,7 @@ - An organism identification assay that is the specified output of a blood microbiology assay. + An organism identification datum that is the specified output of a blood microbiology assay. John Judkins VEuPathDB https://github.com/obi-ontology/obi/issues/1428 @@ -261,7 +261,7 @@ - An organism identification assay that is the specified output of a feces microbiology assay. + An organism identification datum that is the specified output of a feces microbiology assay. John Judkins VEuPathDB https://github.com/obi-ontology/obi/issues/1428 @@ -299,7 +299,7 @@ - An organism identification assay that is the specified output of a urine microbiology assay. + An organism identification datum that is the specified output of a urine microbiology assay. John Judkins VEuPathDB https://github.com/obi-ontology/obi/issues/1428 @@ -337,7 +337,7 @@ - An organism identification assay that is the specified output of an induced sputum microbiology assay. + An organism identification datum that is the specified output of an induced sputum microbiology assay. John Judkins VEuPathDB https://github.com/obi-ontology/obi/issues/1428 @@ -375,7 +375,7 @@ - An organism identification assay that is the specified output of a cerebrospinal fluid microbiology assay. + An organism identification datum that is the specified output of a cerebrospinal fluid microbiology assay. John Judkins VEuPathDB https://github.com/obi-ontology/obi/issues/1428 @@ -394,7 +394,7 @@ - An organism identification assay that is the specified output of an endotracheal aspirate assay. + An organism identification datum that is the specified output of an endotracheal aspirate assay. John Judkins VEuPathDB https://github.com/obi-ontology/obi/issues/1428 @@ -413,7 +413,7 @@ - An organism identification assay that is the specified output of an endotracheal tube aspirate microbiology assay. + An organism identification datum that is the specified output of an endotracheal tube aspirate microbiology assay. John Judkins VEuPathDB https://github.com/obi-ontology/obi/issues/1428 @@ -432,7 +432,7 @@ - An organism identification assay that is the specified output of a lung microbiology assay. + An organism identification datum that is the specified output of a lung microbiology assay. John Judkins VEuPathDB https://github.com/obi-ontology/obi/issues/1428 @@ -451,7 +451,7 @@ - An organism identification assay that is the specified output of a nasopharyngeal or oropharyngeal swab microbiology assay. + An organism identification datum that is the specified output of a nasopharyngeal or oropharyngeal swab microbiology assay. John Judkins VEuPathDB https://github.com/obi-ontology/obi/issues/1428 @@ -470,7 +470,7 @@ - An organism identification assay that is the specified output of a pleural fluid microbiology assay. + An organism identification datum that is the specified output of a pleural fluid microbiology assay. John Judkins VEuPathDB https://github.com/obi-ontology/obi/issues/1428 @@ -489,7 +489,7 @@ - An organism identification assay that is the specified output of an umbilical cord blood assay. + An organism identification datum that is the specified output of an umbilical cord blood assay. John Judkins VEuPathDB https://github.com/obi-ontology/obi/issues/1428 @@ -508,7 +508,7 @@ - An organism identification assay that is the specified output of an umbilical cord blood microbiology assay. + An organism identification datum that is the specified output of an umbilical cord blood microbiology assay. John Judkins VEuPathDB https://github.com/obi-ontology/obi/issues/1428 @@ -981,7 +981,7 @@ - An organism identification assay that is the specified output of a placental blood microbiology assay. + An organism identification datum that is the specified output of a placental blood microbiology assay. John Judkins VEuPathDB https://github.com/obi-ontology/obi/issues/1297 diff --git a/src/ontology/templates/specimen-assay-data.tsv b/src/ontology/templates/specimen-assay-data.tsv index 7ca4544c..6a1ce202 100644 --- a/src/ontology/templates/specimen-assay-data.tsv +++ b/src/ontology/templates/specimen-assay-data.tsv @@ -1,22 +1,22 @@ ontology ID label editor preferred term has curation status alternative term definition definition source example of usage term editor editor note curator note ontology term requester term tracker item logical type parent class assay organism ID LABEL A editor preferred term AI has curation status A alternative term SPLIT=| A definition A definition source SPLIT=| A example of usage SPLIT=| A term editor SPLIT=| A editor note SPLIT=| A curator note SPLIT=| A ontology term requester A term tracker item CLASS_TYPE CI C is_specified_output_of some % C 'is about' some % OBI:0003243 blood assay datum A data item that is the specified output of a blood assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass data item blood assay -OBI:0003244 blood microbiology datum An organism identification assay that is the specified output of a blood microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum blood microbiology assay +OBI:0003244 blood microbiology datum An organism identification datum that is the specified output of a blood microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum blood microbiology assay OBI:0003245 feces assay datum A data item that is the specified output of a feces assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass data item feces assay -OBI:0003246 feces microbiology datum An organism identification assay that is the specified output of a feces microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum feces microbiology assay +OBI:0003246 feces microbiology datum An organism identification datum that is the specified output of a feces microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum feces microbiology assay OBI:0003247 urine assay datum A data item that is the specified output of a urine assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass data item urine assay -OBI:0003248 urine microbiology datum An organism identification assay that is the specified output of a urine microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum urine microbiology assay +OBI:0003248 urine microbiology datum An organism identification datum that is the specified output of a urine microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum urine microbiology assay OBI:0003249 induced sputum assay datum A data item that is the specified output of a induced sputum assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass data item induced sputum assay -OBI:0003251 induced sputum microbiology datum An organism identification assay that is the specified output of an induced sputum microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum induced sputum microbiology assay +OBI:0003251 induced sputum microbiology datum An organism identification datum that is the specified output of an induced sputum microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum induced sputum microbiology assay OBI:0003252 cerebrospinal fluid assay datum A data item that is the specified output of a cerebrospinal fluid assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass data item cerebrospinal fluid assay -OBI:0003253 cerebrospinal fluid microbiology datum An organism identification assay that is the specified output of a cerebrospinal fluid microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum cerebrospinal fluid microbiology assay -OBI:0003254 endotracheal aspirate assay datum An organism identification assay that is the specified output of an endotracheal aspirate assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass data item endotracheal aspirate assay -OBI:0003255 endotracheal tube aspirate microbiology datum An organism identification assay that is the specified output of an endotracheal tube aspirate microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum endotracheal tube aspirate microbiology assay -OBI:0003256 lung microbiology datum An organism identification assay that is the specified output of a lung microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum lung microbiology assay -OBI:0003257 nasopharyngeal or oropharyngeal swab microbiology datum An organism identification assay that is the specified output of a nasopharyngeal or oropharyngeal swab microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum nasopharyngeal or oropharyngeal swab microbiology assay -OBI:0003258 pleural fluid microbiology datum An organism identification assay that is the specified output of a pleural fluid microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum pleural fluid microbiology assay -OBI:0003259 umbilical cord blood assay datum An organism identification assay that is the specified output of an umbilical cord blood assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass data item umbilical cord blood assay -OBI:0003260 umbilical cord blood microbiology datum An organism identification assay that is the specified output of an umbilical cord blood microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum umbilical cord blood microbiology assay +OBI:0003253 cerebrospinal fluid microbiology datum An organism identification datum that is the specified output of a cerebrospinal fluid microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum cerebrospinal fluid microbiology assay +OBI:0003254 endotracheal aspirate assay datum An organism identification datum that is the specified output of an endotracheal aspirate assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass data item endotracheal aspirate assay +OBI:0003255 endotracheal tube aspirate microbiology datum An organism identification datum that is the specified output of an endotracheal tube aspirate microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum endotracheal tube aspirate microbiology assay +OBI:0003256 lung microbiology datum An organism identification datum that is the specified output of a lung microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum lung microbiology assay +OBI:0003257 nasopharyngeal or oropharyngeal swab microbiology datum An organism identification datum that is the specified output of a nasopharyngeal or oropharyngeal swab microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum nasopharyngeal or oropharyngeal swab microbiology assay +OBI:0003258 pleural fluid microbiology datum An organism identification datum that is the specified output of a pleural fluid microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum pleural fluid microbiology assay +OBI:0003259 umbilical cord blood assay datum An organism identification datum that is the specified output of an umbilical cord blood assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass data item umbilical cord blood assay +OBI:0003260 umbilical cord blood microbiology datum An organism identification datum that is the specified output of an umbilical cord blood microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass organism identification datum umbilical cord blood microbiology assay OBI:0003261 bacteria in blood datum A blood microbiology datum that is interpreted as an indication of the presence of bacteria in the specimen. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass blood microbiology datum Bacteria OBI:0003262 virus in blood datum A blood microbiology datum that is interpreted as an indication of the presence of viruses in the specimen. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass blood microbiology datum Viruses OBI:0003263 eukaryota in blood datum A blood microbiology datum that is interpreted as an indication of the presence of eukaryota in the specimen. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass blood microbiology datum Eukaryota @@ -39,7 +39,7 @@ OBI:0003279 eukaryota in pleural fluid datum A pleural fluid microbiology dat OBI:0003280 virus in pleural fluid datum A pleural fluid microbiology datum that is interpreted as an indication of the presence of viruses in the specimen. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass pleural fluid microbiology datum Viruses OBI:0003281 eukaryota in umbilical cord blood datum An umbilical cord blood microbiology datum that is interpreted as an indication of the presence of eukaryota in the specimen. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1428 subclass umbilical cord blood microbiology datum Eukaryota OBI:0003365 milk assay datum A data item that is the specified output of a milk assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1515 subclass data item milk assay -OBI:0003382 placental blood microbiology datum An organism identification assay that is the specified output of a placental blood microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1297 subclass organism identification datum placental blood microbiology assay +OBI:0003382 placental blood microbiology datum An organism identification datum that is the specified output of a placental blood microbiology assay. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1297 subclass organism identification datum placental blood microbiology assay OBI:0003383 eukaryota in placental blood datum A placental blood microbiology datum that is interpreted as an indication of the presence of eukaryota in the specimen. VEuPathDB John Judkins https://github.com/obi-ontology/obi/issues/1297 subclass placental blood microbiology datum Eukaryota OBI:0003417 antigen specific antibodies assay datum A data item that is the specified output of an antigen specific antibodies assay. VEuPathDB John Judkins ORCID:0000-0001-6595-0902 https://github.com/obi-ontology/obi/issues/1526 subclass data item antigen specific antibodies assay OBI:0003420 antigen specific antibodies in blood assay datum An antigen specific antibodies assay datum that is the specified output of an antigen specific antibodies in blood assay. VEuPathDB John Judkins ORCID:0000-0001-6595-0902 https://github.com/obi-ontology/obi/issues/1526 subclass blood assay datum antigen specific antibodies in blood assay