2022-01-03 Release

Note that this release includes two known issues with bad equivalent classes (#1475, #1476) and missing labels for two deprecated GO terms.

New terms added:

ID	Label
OBI:0002776	cytometry analysis by automated gating
OBI:0002777	cytometry analysis by manual gating
OBI:0002816	chromatography vial
OBI:0003087	autofluorescence assay
OBI:0003088	autofluorescence microscopy assay
OBI:0003089	bulk assay for transposase-accessible chromatin using sequencing
OBI:0003090	bulk RNA-seq assay
OBI:0003091	multiplexed fluorescent antibody imaging assay
OBI:0003092	Cell DIVE multiplexed imaging assay
OBI:0003093	co-detection by indexing assay
OBI:0003094	fluorescence in-situ hybridization assay
OBI:0003095	decoding amplified targeted transcripts with fluorescence in situ hybridization assay
OBI:0003096	imaging mass cytometry assay
OBI:0003097	liquid chromatography mass spectrometry assay
OBI:0003098	lightsheet fluorescence microscopy assay
OBI:0003099	matrix assisted laser desorption ionization imaging mass spectrometry assay
OBI:0003100	multiplexed ion beam imaging assay
OBI:0003101	nanospray desorption electrospray ionization assay
OBI:0003102	nanodroplet processing in one pot for trace samples assay
OBI:0003103	periodic acid-Schiff staining assay
OBI:0003104	single cell combinatorial indexing assay for transposase-accessessable chromatin using sequencing
OBI:0003105	single-cell combinatorial indexing RNA sequencing assay
OBI:0003106	sequential fluorescence in-situ hybridization assay
OBI:0003107	slide-seq assay
OBI:0003108	single-nucleus chromatin accessibility and mRNA expression sequencing assay
OBI:0003109	single-nucleus RNA sequencing assay
OBI:0003110	gas chromatography mass spectrometry assay
OBI:0003111	SOMAscan assay
OBI:0003112	Olink assay
OBI:0003113	proximity extension assay
OBI:0003115	antigen detection by cytometric bead array assay
OBI:0003116	antibody detection by cytometric bead array assay
OBI:0003117	3D molecular structure determination assay
OBI:0003118	electron-microscopy 3D molecular structure determination assay
OBI:0003119	antigen:antibody complex
OBI:0003120	epitope:MHC:TCR complex
OBI:0003121	MHC:ligand complex
OBI:0003122	3D cell structure determination assay
OBI:0003123	3D neural cell structure determination assay
OBI:0003124	neuron morphology assay
OBI:0003125	mosaicism with repeat frameshift genetic sparse labeling
OBI:0003126	neuron morphology reconstruction assay
OBI:0003127	B cell epitope assay
OBI:0003128	T cell epitope assay
OBI:0003129	chemical mutagenesis
OBI:0003130	irradiation mutagenesis
OBI:0003131	directed mutagenesis
OBI:0003132	endonuclease mediated mutagenesis
OBI:0003133	cas mediated mutagenesis
OBI:0003134	TALEN mediated mutagenesis
OBI:0003135	zinc finger mediated mutagenesis
OBI:0003136	transgenic mutagenesis
OBI:0003137	gene-trap mutagenesis
OBI:0003138	enhancer-trap mutagenesis
OBI:0003139	targeted mutagenesis
OBI:0003140	transposon-induced mutagenesis
OBI:0003141	categorical binding datum
OBI:0003142	quantitative binding datum
OBI:0003143	EC50 binding datum
OBI:0003144	IC50 binding datum
OBI:0003145	assay measuring quantitative binding of a MHC:ligand complex
OBI:0003146	assay measuring quantitative binding of an antigen:antibody complex
OBI:0003147	assay measuring quantitative binding of an epitope:MHC:TCR complex
OBI:0003148	albumin concentration assay
OBI:0003149	basophil percentage assay
OBI:0003150	calcium cation concentration assay
OBI:0003151	chloride concentration assay
OBI:0003152	cholesterol concentration assay
OBI:0003153	creatinine concentration assay
OBI:0003154	eosinophil percentage assay
OBI:0003155	globulin concentration assay
OBI:0003156	hemoglobin concentration assay
OBI:0003157	high-density lipoprotein cholesterol concentration assay
OBI:0003158	iron concentration assay
OBI:0003159	low-density lipoprotein cholesterol concentration assay
OBI:0003160	lymphocyte percentage assay
OBI:0003161	metamyelocyte count assay
OBI:0003162	metamyelocyte percentage assay
OBI:0003163	methemoglobin percentage assay
OBI:0003164	monocyte percentage assay
OBI:0003165	myelocyte count assay
OBI:0003166	neutrophil percentage assay
OBI:0003167	phosphate ion concentration assay
OBI:0003168	potassium(1+) concentration assay
OBI:0003170	reticulocyte percentage assay
OBI:0003171	sodium(1+) concentration assay
OBI:0003172	thyroid stimulating hormone concentration assay
OBI:0003173	triglyceride concentration assay
OBI:0003174	3,3',5'-triiodothyronine concentration assay
OBI:0003175	fibrinogen concentration assay
OBI:0003176	free thyroxine concentration assay
OBI:0003177	total thyroxine concentration assay
OBI:0003180	direct bilirubin concentration assay
OBI:0003181	indirect bilirubin concentration assay
OBI:0003182	total bilirubin concentration assay
OBI:0003183	mean cell hemoglobin assay
OBI:0003184	mean cell hemoglobin concentration assay
OBI:0003185	mean platelet volume assay
OBI:0003186	immature neutrophil count assay
OBI:0003187	immature neutrophil percentage assay
OBI:0003188	nucleated erythrocyte percentage assay
OBI:0003189	mean cell volume assay
OBI:0003190	erythrocyte assay
OBI:0003191	manual hematocrit assay
OBI:0003192	adiponectin assay
OBI:0003193	adiponectin concentration assay
OBI:0003194	creatine assay
OBI:0003195	creatine concentration assay
OBI:0003196	estradiol assay
OBI:0003197	estradiol concentration assay
OBI:0003202	leptin assay
OBI:0003203	leptin concentration assay
OBI:0003204	lipoprotein concentration assay
OBI:0003205	high-density lipoprotein concentration assay
OBI:0003206	low-density lipoprotein concentration assay
OBI:0003207	very-low-density lipoprotein concentration assay
OBI:0003208	luteinizing hormone assay
OBI:0003209	luteinizing hormone concentration assay
OBI:0003210	nitrite assay
OBI:0003211	nitrite concentration assay
OBI:0003212	phospholipid assay
OBI:0003213	phospholipid concentration assay
OBI:0003214	progesterone assay
OBI:0003215	progesterone concentration assay
OBI:0003216	testosterone assay
OBI:0003217	testosterone concentration assay
OBI:0003218	bile salt assay
OBI:0003219	bile salt concentration assay
OBI:0003220	fatty acid assay
OBI:0003221	free fatty acid concentration assay
OBI:0003222	insulin assay
OBI:0003223	insulin concentration assay
OBI:0003224	follicle stimulating hormone assay
OBI:0003225	follicle stimulating hormone concentration assay
OBI:0003226	total lymphocyte count assay
OBI:0003227	total lymphocyte percentage assay
OBI:0003228	fluorescent immunospot assay
OBI:0003229	plasma proteomics assay
OBI:0003230	T cell activation induced marker assay
OBI:0003231	leukapheresis
OBI:0003232	cerebrospinal fluid assay
OBI:0003233	endotracheal aspirate assay
OBI:0003234	induced sputum assay
OBI:0003235	lung assay
OBI:0003236	milk assay
OBI:0003237	feces assay
OBI:0003238	umbilical cord blood assay
OBI:0003239	saliva assay
OBI:0003240	cerebrospinal fluid microbiology assay
OBI:0003241	endotracheal tube aspirate microbiology assay
OBI:0003242	induced sputum microbiology assay
OBI:0003243	blood assay datum
OBI:0003244	blood microbiology datum
OBI:0003245	feces assay datum
OBI:0003246	feces microbiology datum
OBI:0003247	urine assay datum
OBI:0003248	urine microbiology datum
OBI:0003249	induced sputum assay datum
OBI:0003251	induced sputum microbiology datum
OBI:0003252	cerebrospinal fluid assay datum
OBI:0003253	cerebrospinal fluid microbiology datum
OBI:0003254	endotracheal aspirate assay datum
OBI:0003255	endotracheal tube aspirate microbiology datum
OBI:0003256	lung microbiology datum
OBI:0003257	nasopharyngeal or oropharyngeal swab microbiology datum
OBI:0003258	pleural fluid microbiology datum
OBI:0003259	umbilical cord blood assay datum
OBI:0003260	umbilical cord blood microbiology datum
OBI:0003261	bacteria in blood datum
OBI:0003262	virus in blood datum
OBI:0003263	eukaryota in blood datum
OBI:0003264	bacteria in feces datum
OBI:0003265	eukaryota in feces datum
OBI:0003266	virus in feces datum
OBI:0003267	eukaryota in urine datum
OBI:0003268	bacteria in induced sputum datum
OBI:0003269	eukaryota in induced sputum datum
OBI:0003270	virus in induced sputum datum
OBI:0003271	bacteria in endotracheal tube aspirate datum
OBI:0003272	bacteria in lung datum
OBI:0003273	eukaryota in lung datum
OBI:0003274	virus in lung datum
OBI:0003275	bacteria in nasopharyngeal or oropharyngeal swab datum
OBI:0003276	eukaryota in nasopharyngeal or oropharyngeal swab datum
OBI:0003277	virus in nasopharyngeal or oropharyngeal swab datum
OBI:0003278	bacteria in pleural fluid datum
OBI:0003279	eukaryota in pleural fluid datum
OBI:0003280	virus in pleural fluid datum
OBI:0003281	eukaryota in umbilical cord blood datum
OBI:0003282	lung microbiology assay
OBI:0003283	pleural fluid microbiology assay
OBI:0003284	umbilical cord blood microbiology assay
OBI:0003285	nasopharyngeal or oropharyngeal swab microbiology assay
OBI:0003286	urine microbiology assay
OBI:0003287	multiplex real time polymerase chain reaction assay
OBI:0003288	multiplex real time reverse-transcription polymerase chain reaction assay
OBI:0003289	mosquito membrane feeding device
OBI:0003290	mosquito membrane feeding assay
OBI:0003291	in silico design
OBI:0003292	cytometric bead array assay measuring epitope specific granulysin release by T cells
OBI:0003293	cytometric bead array assay measuring epitope specific perforin release by T cells
OBI:0003294	modified acid-fast stain microscopy assay
OBI:0003295	positive binding datum
OBI:0003296	antibodies from lymphocyte secretions assay

2021-08-18 Release

This release includes 77 new terms:

ID	Label
OBI:0002946	fluorescence imaging-based apoptosis assay
OBI:0002947	fluorescence imaging-based cell proliferation assay
OBI:0002948	fluroescence imaging-based cell cycle state assay
OBI:0002949	fluorescence imaging-based cell viability assay
OBI:0002950	fluorescence imaging-based drug synergy assay
OBI:0002951	fluorescence imaging-based cell morphology assay
OBI:0002952	fluorescence imaging multiplex cytological profiling
OBI:0002953	protein state assay
OBI:0002954	fluorescence imaging-based protein phosphorylation state assay
OBI:0002955	mass spectrometry-based protein state assay
OBI:0002956	targeted, drug-modulated, mass spectrometry-based protein phoshporylation-state assay
OBI:0002957	reverse phase protein array profiling assay
OBI:0002958	SWATH-MS protein profiling assay
OBI:0002959	tandem mass tag mass spectrometry
OBI:0002960	fluorescence imaging-based reporter gene assay
OBI:0002961	global chromatin profiling by mass spectrometry assay
OBI:0002962	kinase inhibitor assay
OBI:0002963	KINOMEscan assay
OBI:0002964	KiNativ assay
OBI:0002965	landmark transcript profiling assay
OBI:0002966	microenvironment microarray assay
OBI:0002967	microwestern meso-scale quantitative western blot assay
OBI:0002968	positive/negative ion switching metabolite profiling assay
OBI:0002969	cyclic immunoflouroescence assay
OBI:0002970	multiplex bead-based protein state immunoassay
OBI:0003029	barcode target locus role
OBI:0003030	oligonucleotide primer set
OBI:0003031	fluorogenic PCR assay
OBI:0003032	genotyping by PCR assay
OBI:0003033	cleavage under targets and release using nuclease assay
OBI:0003034	cleavage under targets and tagmentation
OBI:0003035	coma severity assay
OBI:0003036	Plasmodium gametocyte detection assay
OBI:0003037	malaria rapid diagnosis assay
OBI:0003038	parasite detection assay
OBI:0003039	feces microbiology assay
OBI:0003040	blood assay
OBI:0003041	falcivax rapid diagnostic test
OBI:0003042	optimal-IT rapid diagnostic test
OBI:0003043	urine assay
OBI:0003044	parasite species identification by PCR assay
OBI:0003045	parasite detection by PCR assay
OBI:0003046	free-standing window trap
OBI:0003048	BG-lure scent dispenser
OBI:0003049	hand-held sweep net
OBI:0003050	Centers for Disease Control and Prevention gravid trap
OBI:0003051	egg specimen collection process
OBI:0003052	larval specimen collection process
OBI:0003053	pupal specimen collection process
OBI:0003054	blood specimen in vacutainer
OBI:0003055	blood specimen on filter paper
OBI:0003056	proportion mapped reads
OBI:0003057	antibiotic administration process
OBI:0003063	insecticide resistance datum
OBI:0003064	organism identification datum
OBI:0003066	easting coordinate measurement datum
OBI:0003067	northing coordinate measurement datum
OBI:0003068	clinical study center
OBI:0003069	sequencing protocol
OBI:0003070	specimen collection protocol
OBI:0003071	participant identifier
OBI:0003072	axillary temperature measurement datum
OBI:0003073	organismal body temperature measurement datum
OBI:0003074	common name of organism
OBI:0003075	age since birth at time of enrollment
OBI:0003076	age since birth at time of visit
OBI:0003077	entomological data item
OBI:0003079	temperature measurement datum
OBI:0003080	organismal body temperature measurement assay
OBI:0003081	extraction date
OBI:0003082	extraction duration time
OBI:0003083	specimen collection time post disease onset
OBI:0003084	specimen collection time post infection
OBI:0003085	laboratory postal address
OBI:0003086	laboratory-based population
OBI:0003114	Illumina MiniSeq
OBI:2100402	pooled clone sequencing assay

2021-04-06 Release

This release includes 488 new terms

ID	Label
OBI:0002786	personal protective device
OBI:0002787	face mask
OBI:0002788	non-medical mask
OBI:0002789	medical mask
OBI:0002790	N95 respirator
OBI:0002791	face shield
OBI:0002792	patient gown
OBI:0002793	scrubs
OBI:0002794	reusable patient gown
OBI:0002795	disposable patient gown
OBI:0002796	medical gown
OBI:0002797	apron
OBI:0002798	surgical gown
OBI:0002799	personal protective glove
OBI:0002800	personal protective clothing item
OBI:0002802	laboratory coat
OBI:0002803	medical glove
OBI:0002804	nitrile glove
OBI:0002805	transparent droplet barrier
OBI:0002806	footwear cover
OBI:0002807	disposable footwear cover
OBI:0002808	reusable footwear cover
OBI:0002809	surgical N95 respirator
OBI:0002810	protective coverall
OBI:0002811	protective sleeve
OBI:0002812	protective apron
OBI:0002813	medical cap
OBI:0002814	specimen collection device
OBI:0002819	specimen pad
OBI:0002820	specimen collection swab stick
OBI:0002821	cotton swab
OBI:0002822	drag swab
OBI:0002823	pre-moistened swab stick
OBI:0002824	surface wipe
OBI:0002975	input protein sequence start site
OBI:0002976	input protein sequence stop site
OBI:0002977	input gene sequence start site
OBI:0002978	input gene sequence stop site
OBI:0002979	reference protein sequence start site
OBI:0002980	reference protein sequence stop site
OBI:0002981	reference gene sequence start site
OBI:0002982	reference gene sequence stop site
OBI:0002983	altitude measurement datum
OBI:0002984	capture Hi-C assay
OBI:0002985	magnetic resonance imaging assay
OBI:0002986	computed tomography imaging assay
OBI:0002987	positron emission tomography imaging assay
OBI:0002988	specimen collection duration
OBI:0002989	material supplier
OBI:0002990	T cell receptor repertoire sequencing assay
OBI:0002991	B cell receptor repertoire sequencing assay
OBI:0002992	prevalence of pathogen in specimens
OBI:0002993	prevalence of blood meal specimens from a host organism
OBI:0002994	presence of blood from host organism in blood meal specimen
OBI:0002995	blood meal source organism
OBI:0002996	blood meal source role
OBI:0002997	arthropod attractor role
OBI:0002998	arthropod collection process with automated identification
OBI:0002999	gravid female arthropod specimen collection process
OBI:0003000	resting flight-capable arthropod specimen collection process
OBI:0003001	daytime arthropod specimen collection by aspiration
OBI:0003002	arthropod resting in human house specimen collection by aspiration
OBI:0003003	landing arthropod specimen collection process
OBI:0003004	flying adult arthropod collection process by passive interception
OBI:0003005	device for resting of adult arthropods for collection
OBI:0003006	well net for arthropod immatures
OBI:0003007	arthropod trap containing small non-human animal bait
OBI:0003008	trap for emerging adult arthropods
OBI:0003009	ferritin assay
OBI:0003010	fibrinogen assay
OBI:0003011	iron assay
OBI:0003012	ionized calcium assay
OBI:0003013	transferrin assay
OBI:0003014	uric acid assay
OBI:0003015	globulin assay
OBI:0003016	myelocyte assay
OBI:0003017	metamyelocyte assay
OBI:0003018	hematocrit assay
OBI:0003019	promyelocyte assay
OBI:0003021	basophil assay
OBI:0003022	neutrophil assay
OBI:0003023	eosinophil assay
OBI:0003024	lymphocyte assay
OBI:0003025	monocyte assay
OBI:0003026	reticulocyte assay
OBI:0003027	macrophage assay
OBI:0003028	platelet assay
OBI:2100001	carbon dioxide assay
OBI:2100002	sodium(1+) assay
OBI:2100003	creatinine assay
OBI:2100004	potassium(1+) assay
OBI:2100005	basophil count assay
OBI:2100006	neutrophil count assay
OBI:2100007	eosinophil count assay
OBI:2100008	lymphocyte count assay
OBI:2100009	monocyte count assay
OBI:2100010	chloride assay
OBI:2100011	erythrocyte count assay
OBI:2100012	platelet count assay
OBI:2100013	leukocyte count assay
OBI:2100014	hemoglobin assay
OBI:2100015	phosphate ion assay
OBI:2100016	alanine aminotransferase assay
OBI:2100017	alkaline phosphatase (human) assay
OBI:2100018	bilirubin IXalpha assay
OBI:2100019	aspartate aminotransferase (human) assay
OBI:2100020	glucose assay
OBI:2100021	magnesium cation assay
OBI:2100022	albumin assay
OBI:2100023	protein assay
OBI:2100024	calcium cation assay
OBI:2100025	creatine kinase assay
OBI:2100026	nucleate erythrocyte count assay
OBI:2100027	segmented neutrophil of bone marrow count assay
OBI:2100028	lactate dehydrogenase complex assay
OBI:2100029	triglyceride assay
OBI:2100030	high-density lipoprotein cholesterol assay
OBI:2100031	cholesterol assay
OBI:2100032	low-density lipoprotein cholesterol assay
OBI:2100033	thyroid stimulating hormone assay
OBI:2100034	prostate-specific antigen assay
OBI:2100035	thyroxine assay
OBI:2100036	elemental oxygen assay
OBI:2100037	folic acids assay
OBI:2100038	reticulocyte count assay
OBI:2100039	osmolality assay
OBI:2100040	methemoglobin assay
OBI:2100041	cytosolic creatine kinase complex, MB-type assay
OBI:2100042	rac-lactic acid assay
OBI:2100043	hydrogencarbonate assay
OBI:2100044	vancomycin assay
OBI:2100045	tobramycin assay
OBI:2100046	3,3',5'-triiodothyronine assay
OBI:2100047	C-reactive protein assay
OBI:2100048	megakaryocyte count assay
OBI:2100049	mesothelial cell count assay
OBI:2100050	macrophage count assay
OBI:2100051	3-hydroxybutyric acid assay
OBI:2100052	panel5 venous blood carbon dioxide assay
OBI:2100053	panel5 venous blood sodium assay
OBI:2100054	panel5 venous blood creatinine assay
OBI:2100055	panel5 venous blood potassium assay
OBI:2100056	automated differential venous blood basophil count assay
OBI:2100057	automated differential venous blood neutrophil count assay
OBI:2100058	automated differential venous blood eosinophil count assay
OBI:2100059	automated differential venous blood lymphocyte count assay
OBI:2100060	automated differential venous blood monocyte count assay
OBI:2100061	venous blood chloride assay
OBI:2100062	CBC with automated differential venous blood RBC count assay
OBI:2100063	CBC with automated differential venous blood platelet count assay
OBI:2100064	CBC with automated differential venous blood WBC count assay
OBI:2100065	CBC with automated differential venous blood hematocrit assay
OBI:2100066	CBC with automated differential venous blood hemoglobin assay
OBI:2100067	venous blood phosphate assay
OBI:2100068	liver injury venous blood alanine aminotransferase assay
OBI:2100069	liver injury venous blood human alkaline phosphatase assay
OBI:2100070	liver injury venous blood bilirubin assay
OBI:2100071	liver injury venous blood human aspartate aminotransferase assay
OBI:2100072	venous blood glucose assay
OBI:2100073	venous blood magnesium assay
OBI:2100074	CBC venous blood RBC count assay
OBI:2100075	CBC venous blood WBC count assay
OBI:2100076	CBC venous blood hematocrit assay
OBI:2100077	CBC venous blood platelet count assay
OBI:2100078	CBC venous blood hemoglobin assay
OBI:2100079	corrected venous blood leukocyte count assay
OBI:2100080	liver evaluation venous blood bilirubin assay
OBI:2100081	liver evaluation venous blood globulin assay
OBI:2100082	liver evaluation venous blood albumin assay
OBI:2100083	liver evaluation venous blood human aspartate aminotransferase assay
OBI:2100084	liver evaluation venous blood alanine aminotransferase assay
OBI:2100085	liver evaluation venous blood human alkaline phosphatase assay
OBI:2100086	liver evaluation venous blood protein assay
OBI:2100087	basic metabolic panel venous blood chloride assay
OBI:2100088	basic metabolic panel venous blood potassium assay
OBI:2100089	basic metabolic panel venous blood sodium assay
OBI:2100090	basic metabolic panel venous blood creatinine assay
OBI:2100091	basic metabolic panel venous blood glucose assay
OBI:2100092	basic metabolic panel venous blood calcium assay
OBI:2100093	basic metabolic panel venous blood carbon dioxide assay
OBI:2100094	venous blood creatine kinase assay
OBI:2100095	venous blood calcium assay
OBI:2100096	venous blood ferritin assay
OBI:2100097	total venous blood calcium assay
OBI:2100098	venous blood iron assay
OBI:2100099	CBC with manual differential venous blood band neutrophil count assay
OBI:2100100	CBC with manual differential venous blood WBC count assay
OBI:2100101	CBC with manual differential venous blood eosinophil count assay
OBI:2100102	CBC with manual differential venous blood lymphocyte count assay
OBI:2100103	CBC with manual differential venous blood nucleated RBC count assay
OBI:2100104	CBC with manual differential venous blood monocyte count assay
OBI:2100105	CBC with manual differential venous blood segmented neutrophil count assay
OBI:2100106	CBC with manual differential venous blood basophil count assay
OBI:2100107	venous blood albumin assay
OBI:2100108	cardiac enzymes venous blood creatine kinase assay
OBI:2100109	venous blood haptoglobin assay
OBI:2100110	venous blood lactate dehydrogenase assay
OBI:2100111	venous blood prealbunin assay
OBI:2100112	lipid panel venous blood triglyceride assay
OBI:2100113	lipid panel venous blood high density lipoprotein assay
OBI:2100114	lipid panel venous blood cholesterol assay
OBI:2100115	lipid panel venous blood low density lipoprotein assay
OBI:2100116	venous blood hemoglobin A1c assay
OBI:2100117	venous blood uric acid assay
OBI:2100118	total venous blood protein assay
OBI:2100119	venous blood thyroid stimulating hormone assay
OBI:2100120	venous blood prostate specific antigen assay
OBI:2100121	24 hour total urine volume assay
OBI:2100122	T4 uptake venous blood T4 assay
OBI:2100123	arterial blood glucose assay
OBI:2100124	CBC with manual differential venous blood cell count assay
OBI:2100125	hemoglobin oxygen saturation arterial blood oxygen assay
OBI:2100126	hemoglobin oxygen saturation arterial blood hemoglobin assay
OBI:2100127	inpatient profile venous blood sodium assay
OBI:2100128	...

2020-12-16 Release

Changes:

• Add base (imports removed) file (#1225)
• Add sample-collection template (#1241)
• Fix placement of “antigen binding” and update “core promoter binding” (#1245)
• Move RNA seq assay under RNA sequencing assay (#1255)
• Fix cytometer definition (#1266)

59 new terms:

ID	Label
OBI:0002778	tracheal aspirate specimen
OBI:0002779	mid-turbinate nasal swab specimen
OBI:0002780	nasal aspirate specimen
OBI:0002781	lower respiratory tract aspirate specimen
OBI:0002782	upper respiratory specimen
OBI:0002783	lower respiratory tract specimen
OBI:0002784	anterior nasal swab specimen
OBI:0002785	aspiration specimen collection
OBI:0002897	surveillance process
OBI:0002898	cluster study group role
OBI:0002899	compound study group role
OBI:0002900	ultraviolet light source
OBI:0002901	visible light source
OBI:0002902	solar light source
OBI:0002903	BioGents
OBI:0002904	adult arthropod specimen collection process
OBI:0002905	animal-biting arthropod specimen collection by aspiration
OBI:0002906	animal-biting outdoor arthropod specimen collection by aspiration
OBI:0002907	aquatic arthropod specimen collection process
OBI:0002908	arthropod resting in animal house specimen collection by aspiration
OBI:0002909	arthropod resting outdoors on artificial support specimen collection by aspiration
OBI:0002910	arthropod resting outdoors on natural support specimen collection by aspiration
OBI:0002911	arthropod resting outdoors specimen collection by aspiration
OBI:0002912	arthropod specimen collection by aspiration
OBI:0002913	arthropod specimen collection process
OBI:0002914	human-biting arthropod specimen collection by aspiration
OBI:0002915	human-biting indoor arthropod specimen collection by aspiration
OBI:0002916	human-biting outdoor arthropod specimen collection by aspiration
OBI:0002917	knockdown arthropod specimen collection by pyrethrum spray
OBI:0002918	knockdown arthropod specimen collection process
OBI:0002919	live arthropod specimen collection process
OBI:0002920	arthropod trap
OBI:0002921	artificial pit shelter
OBI:0002922	baited net trap
OBI:0002923	barrier trap
OBI:0002924	BG-Counter
OBI:0002925	BG-Sentinel trap
OBI:0002926	Centers for Disease Control and Prevention light trap
OBI:0002927	dipper for arthropod immatures
OBI:0002928	encephalitis virus surveillance trap
OBI:0002929	gravid trap
OBI:0002930	light trap
OBI:0002931	light trap for indoor use
OBI:0002932	light trap for outdoor use
OBI:0002933	Mosquito Magnet trap
OBI:0002934	MosquiTRAP
OBI:0002935	New Jersey light trap
OBI:0002936	Onderstepoort Veterinary Institute light-suction trap
OBI:0002937	outlet window trap
OBI:0002938	ovitrap
OBI:0002939	resting arthropod trap
OBI:0002940	resting box trap
OBI:0002941	resting bucket
OBI:0002942	Shannon trap
OBI:0002943	sticky resting bucket
OBI:0002944	sticky trap
OBI:0002945	population based design
OBI:0002971	endotracheal tube specimen
OBI:0002972	endotracheal aspirate specimen

2020-08-24 Release

This release includes 60 new terms:

ID	Label
OBI:0002650	biopsy
OBI:0002651	image guided biopsy
OBI:0002652	computed tomography assisted biopsy
OBI:0002653	ultrasound-guided needle biopsy
OBI:0002654	needle biopsy
OBI:0002655	fine needle aspiration biopsy
OBI:0002656	core needle biopsy
OBI:0002657	surgical biopsy
OBI:0002660	abdominal wall fat pad biopsy
OBI:0002661	tail biopsy
OBI:0002662	bone marrow biopsy
OBI:0002663	skinpunch biopsy
OBI:0002679	vacuum-assisted biopsy needle
OBI:0002745	vacuum-assisted biopsy
OBI:0002746	induced sputum specimen
OBI:0002747	passage process
OBI:0002748	passage history record
OBI:0002750	Oxford Nanopore MinION
OBI:0002751	Oxford Nanopore GridION Mk1
OBI:0002752	Oxford Nanopore PromethION
OBI:0002753	PRO-cap
OBI:0002754	cDNA library
OBI:0002755	Oxford Nanopore Technologies
OBI:0002756	ordinal value specification
OBI:0002759	ribosomal RNA-depleted RNA sequencing assay
OBI:0002760	metatranscriptome sequencing assay
OBI:0002761	lipid profiling assay
OBI:0002762	single-nucleus ATAC-seq
OBI:0002763	16s ribosomal gene sequencing assay
OBI:0002764	single-cell ATAC-seq
OBI:0002765	microbiome protein expression profiling assay
OBI:0002766	cytokine assay
OBI:0002767	amplicon sequencing assay
OBI:0002768	whole virome sequencing assay
OBI:0002769	karyotype information
OBI:0002770	partial karyotype information
OBI:0002771	full karyotype information
OBI:0002772	presence or over-threshold value specification
OBI:0002773	single-value binding of antibody with reporter to antigen assay
OBI:0002774	platelet-poor plasma specimen
OBI:0002775	platelet-poor plasma preparation process
OBI:2000000	uterine cervix specimen
OBI:2000001	urethra specimen
OBI:2000002	cervical mucus specimen
OBI:2000003	throat specimen
OBI:2000004	eye specimen
OBI:2000005	respiratory system specimen
OBI:2000006	upper respiratory tract specimen
OBI:2000007	nasopharynx specimen
OBI:2000008	semen specimen
OBI:2000009	bodily fluid specimen
OBI:2000010	chorionic villus specimen
OBI:2000011	meconium specimen
OBI:2000012	umbilical cord blood specimen
OBI:2000013	arterial blood specimen
OBI:2000014	venous blood specimen
OBI:2000015	capillary blood specimen
OBI:2000016	erythrocyte specimen
OBI:2000017	reticulocyte specimen
OBI:2000018	leukocyte specimen

2020-04-23

Fix #1156 caused by missing REO prefix.

2020-04-09

Since the 2019-11-24 release we've reorganized OBI templates and views, but these changes have little effect on our OWL files:

• added templates for study designs, devices, and organizations #1114
• reorganized views #1150
• new NIAID-GSC-BRC view #1151

We updated some obsolete GO terms #1141, and we switched from REO to OBI for two important terms #1135:

• REO:0000171 OBI:0002743 molecular label role
• REO:0000280 OBI:0002744 molecular label

We've added 100 new classes:

• OBI:0002631 single-cell RNA sequencing assay
• OBI:0002632 PacBio Sequel
• OBI:0002633 PacBio Sequel II
• OBI:0002634 in vivo assay measuring B cell epitope specific disease exacerbation resulting from the adoptive transfer of epitope specific antibodies or B cells
• OBI:0002635 in vivo assay measuring T cell epitope specific disease reduction resulting from the adoptive transfer of epitope specific T cells
• OBI:0002636 in vivo assay measuring B cell epitope specific disease reduction resulting from adoptive transfer of epitope specific antibodies or B cells
• OBI:0002637 in vivo assay measuring T cell epitope specific protection from challenge resulting from the adoptive transfer of epitope specific T cells
• OBI:0002638 in vivo assay measuring B cell epitope specific protection from challenge resulting from adoptive transfer of epitope specific antibodies or B cells
• OBI:0002639 in vivo assay measuring T cell epitope specific protection from challenge resulting from the adoptive transfer of epitope specific T cells based on pathogen burden
• OBI:0002640 in vivo assay measuring B cell epitope specific protection from challenge resulting from the adoptive transfer of epitope specific antibodies or B cells based on pathogen burden
• OBI:0002641 in vivo assay measuring T cell epitope specific protection from challenge resulting from the adoptive transfer of epitope specific T cells based on survival
• OBI:0002642 in vivo assay measuring B cell epitope specific protection from challenge resulting from the adoptive transfer of epitope specific antibodies or B cells based on survival
• OBI:0002643 in vivo assay measuring T cell epitope specific protection from tumor challenge resulting from the adoptive transfer of epitope specific T cells
• OBI:0002644 in vivo assay measuring B cell epitope specific protection from tumor challenge resulting from the adoptive transfer of epitope specific antibodies or B cells
• OBI:0002645 in vivo assay measuring T cell epitope specific tolerance induction resulting from the adoptive transfer of epitope specific T cells
• OBI:0002646 in vivo assay measuring B cell epitope specific tolerance induction resulting from the adoptive transfer of epitope specific antibodies or B cells
• OBI:0002647 Giemsa stain assay
• OBI:0002648 individual organism specimen
• OBI:0002649 blood microbiology assay
• OBI:0002664 cytometric bead array assay measuring epitope specific interleukin-15 production by T cells
• OBI:0002665 cytometric bead array assay measuring epitope specific interleukin-16 production by T cells
• OBI:0002666 in vivo assay measuring B cell epitope specific induction of hypersensitivity resulting from the adoptive transfer of epitope specific antibodies or B cells
• OBI:0002667 in vivo skin test assay measuring T cell epitope specific type IV hypersensitivity resulting from the adoptive transfer of epitope specific T cells
• OBI:0002668 in vivo assay measuring epitope specific proliferation of T cells resulting from the adoptive transfer of epitope specific T cells
• OBI:0002669 biological activity assay measuring epitope specific helper T cell enhancement of a B cell mediated immune response resulting from the adoptive transfer of epitope specific T cells
• OBI:0002670 biological activity assay measuring epitope specific helper T cell enhancement of a T cell mediated immune response resulting from the adoptive transfer of epitope specific T cells
• OBI:0002671 in vivo assay measuring epitope specific T cell killing resulting from the adoptive transfer of epitope specific T cells
• OBI:0002672 ELISA measuring epitope specific perforin release by T cells
• OBI:0002673 enrichment culture medium
• OBI:0002674 case series design
• OBI:0002675 massively parallel reporter assay
• OBI:0002676 in vivo assay measuring a T cell epitope specific response after adoptive transfer of epitope specific T cells
• OBI:0002677 in vivo assay measuring a B cell epitope specific response after adoptive transfer of epitope specific antibodies or B cells
• OBI:0002678 in vivo assay measuring T cell epitope specific disease exacerbation resulting from the adoptive transfer of epitope specific T cells
• OBI:0002680 pseudovirus entry assay
• OBI:0002681 glass bottle
• OBI:0002682 glass bottle coated with insecticides
• OBI:0002683 short interspersed nuclear elements polymerase chain reaction
• OBI:0002684 nested polymerase chain reaction
• OBI:0002685 immunoelectrophoresis
• OBI:0002686 counter current immunoelectrophoresis
• OBI:0002687 ligase detection reaction
• OBI:0002688 loop-mediated isothermal amplification
• OBI:0002689 detection of pathogenic organisms objective
• OBI:0002690 insecticide resistance detection objective
• OBI:0002691 arthropod meal of blood specimen
• OBI:0002692 polymerase chain reaction assay
• OBI:0002693 restriction fragment length polymorphism assay
• OBI:0002694 DNA fingerprinting assay
• OBI:0002695 insecticide resistance assay
• OBI:0002696 insecticide resistance by monitoring known mutations assay
• OBI:0002697 insecticide resistance by detecting enzyme activity assay
• OBI:0002698 insecticide resistance bioassay
• OBI:0002699 insecticide resistance by detecting alpha esterase activity assay
• OBI:0002700 insecticide resistance by detecting beta esterase activity assay
• OBI:0002701 insecticide resistance by detecting acetylcholinesterase activity assay
• OBI:0002702 insecticide resistance by detecting glutathione S-transferase activity assay
• OBI:0002703 insecticide resistance by detecting carboxylic ester hydrolase activity assay
• OBI:0002704 insecticide resistance by detecting mixed-function oxidase assay
• OBI:0002705 direct insecticide resistance bioassay
• OBI:0002706 topical application insecticide resistance bioassay
• OBI:0002707 direct insecticide resistance diagnostic assay
• OBI:0002708 insecticide resistance dose response assay
• OBI:0002709 insecticide resistance time response assay
• OBI:0002710 Centre for Disease Control and Prevention bottle bioassay
• OBI:0002711 WHO cone kit diagnostic assay
• OBI:0002712 WHO paper kit diagnostic assay
• OBI:0002713 WHO larvicide diagnostic assay
• OBI:0002714 insecticide resistance dose response by bottle assay
• OBI:0002715 insecticide resistance dose response by survival of larvae assay
• OBI:0002716 insecticide resistance dose response by WHO paper kit assay
• OBI:0002717 insecticide resistance time response by bottle assay
• OBI:0002718 insecticide resistance time response by WHO paper kit assay
• OBI:0002719 insecticide resistance by amplification refractory mutation system assay
• OBI:0002720 insecticide resistance by primer introduced restriction analysis PCR assay
• OBI:0002721 insecticide resistance by nested polymerase chain reaction assay
• OBI:0002722 insecticide resistance by ligase detection reaction assay
• OBI:0002723 insecticide resistance by ligase detection reaction-fluorescent microsphere assay
• OBI:0002724 insecticide resistance by PCR amplification of specific alleles assay
• OBI:0002725 insecticide resistance by fluorogenic PCR assay
• OBI:0002726 insecticide resistance by PCR-RELP assay
• OBI:0002727 insecticide resistance by short interspersed elements PCR assay
• OBI:0002728 pathogen detection assay
• OBI:0002729 VectorTest assay
• OBI:0002730 pathogen detection by Rapid Analyte Measurement Platform assay
• OBI:0002731 pathogen detection by loop-mediated isothermal amplification assay
• OBI:0002732 blood meal assay
• OBI:0002733 blood meal by counter current immunoelectrophoresis assay
• OBI:0002734 DNA based blood meal finger printing assay
• OBI:0002735 organism identification by size assay
• OBI:0002736 organism identification by cross mating assay
• OBI:0002737 organism identification by cytological chromosome examination assay
• OBI:0002738 organism identification by isoenzyme electrophoresis assay
• OBI:0002739 organism identification by morphological examination assay
• OBI:0002740 organism identification by PCR assay
• OBI:0002741 organism identification by specific DNA hybridization assay
• OBI:0002742 organism identification by salinity tolerance assay
• OBI:0002743 molecular label role
• OBI:0002744 molecular label

2019-11-12

Changes:

• GO import updated:
  • 'protein complex' renamed to 'protein-containing complex' in GO import
  • 'cell proliferation' renamed to 'cell population proliferation' in GO import
  • added 'transcription, RNA-templated'
• Assay template validation fixes (#1079)
• 'trial statistician role' axiom fixed (#1073)
• 'comment on investigation' and 'microarray assay measuring binding of a B cell epitope:antibody complex' axioms updated (#1053)

16 New Terms:

• OBI:0002490 - medication time value specification
• OBI:0002491 - medication dose value specification
• OBI:0002492 - case role in case-control study
• OBI:0002493 - control role in case-control study
• OBI:0002619 - site-directed mutagenesis
• OBI:0002620 - random mutagenesis
• OBI:0002621 - reconstitution assay
• OBI:0002622 - in vitro transcription reconstitution assay
• OBI:0002623 - whole metagenome sequencing assay
• OBI:0002624 - case-control study design
• OBI:0002625 - gene knockdown
• OBI:0002626 - RNAi gene knockdown
• OBI:0002627 - ribosomal RNA-depleted RNA extract
• OBI:0002628 - RNAi knockdown assay
• OBI:0002629 - direct RNA sequencing assay
• OBI:0002630 - Illumina NovaSeq 6000

2019-08-06

Changes:

• fixed typos for objective_achieved_by and 'training objective' (#1039)
• fixed 'data transformation' axiom (#1044)

6 new classes:

• differential medium assay (OBI:0002489)
• birth cohort study design (OBI:0002614)
• disease specific study design (OBI:0002615)
• genealogical record (OBI:0002616)
• national biomedical registry (OBI:0002618)
• national registry (OBI:0002617)

1 new data property:

• has representation (OBI:0002815)

2019-06-05

Includes separate Uberon module (#1016), updated PATO module (#1026), and some logical definition fixes for assays (#1028).

25 new classes:

• OBI:0002590 molecular interaction identification design
• OBI:0002591 colocalization identification design
• OBI:0002592 genetic interaction identification design
• OBI:0002593 functional association identification design
• OBI:0002594 direct interaction identification design
• OBI:0002595 enzymatic reaction identification design
• OBI:0002596 self interaction identification design
• OBI:0002597 chromosome conformation capture sequencing assay
• OBI:0002598 inverse polymerase chain reaction
• OBI:0002599 swab specimen
• OBI:0002600 collecting specimen with swab
• OBI:0002601 demultiplexed sequence data
• OBI:0002602 multiplexed sequence data
• OBI:0002603 areolar swab specimen
• OBI:0002604 breast swab specimen
• OBI:0002605 cheek swab specimen
• OBI:0002606 nasopharyngeal swab specimen
• OBI:0002607 oral swab specimen
• OBI:0002608 oropharyngeal swab specimen
• OBI:0002609 rectal swab specimen
• OBI:0002610 tongue swab specimen
• OBI:0002611 vagina swab specimen
• OBI:0002612 fecal swab specimen
• OBI:0002613 environmental swab specimen
• OBI:1200000 FFPE specimen