diff --git a/.env b/.env index b4a1809..4c0593c 100644 --- a/.env +++ b/.env @@ -20,4 +20,4 @@ BASE=IMS_XY-${NAME} ROUNDS=20 TEST_REPEATS=1 -S3ARGS={"anon": true, "client_kwargs": {"endpoint_url": "http://${HOST}:9000"}} +S3ARGS='{"anon": true, "client_kwargs": {"endpoint_url": "http://${HOST}:9000"}}' diff --git a/benchmark/environment.yml b/benchmark/environment.yml index 6257617..f321694 100644 --- a/benchmark/environment.yml +++ b/benchmark/environment.yml @@ -17,7 +17,7 @@ dependencies: - zarr==2.7.1 - go-mc==2020.11.17 - pip==21.0.1 - - pytest-benchmark==3.4.1 + - pytest-benchmark==4.0.0 - pytest-csv==2.0.2 - pytest-profiling==1.7.0 - seaborn==0.11.1 diff --git a/convert/Dockerfile b/convert/Dockerfile index 2eefa71..1d5d631 100644 --- a/convert/Dockerfile +++ b/convert/Dockerfile @@ -1,2 +1,2 @@ FROM continuumio/miniconda3:4.10.3 -RUN conda install -c ome bioformats2raw raw2ometiff +RUN conda install -c ome 'bioformats2raw==0.3.0' 'raw2ometiff==0.3.0' diff --git a/generate/imarisWriter-Setup.sh b/generate/imarisWriter-Setup.sh index 8dc4349..53fadbe 100755 --- a/generate/imarisWriter-Setup.sh +++ b/generate/imarisWriter-Setup.sh @@ -20,7 +20,7 @@ cp -r build/_CPack_Packages/Linux/TGZ/HDF5-1.12.0-Linux/HDF_Group/HDF5/1.12.0/in cd .. #zlib -wget -N -O zlib-1.2.12.tar.gz https://www.zlib.net/zlib-1.2.12.tar.gz +wget -N -O zlib-1.2.12.tar.gz https://www.zlib.net/fossils/zlib-1.2.12.tar.gz tar -xzf zlib-1.2.12.tar.gz cd zlib-1.2.12/ ./configure --prefix=./zlibInstall