diff --git a/exec-sbatch-gpu.sh b/exec-sbatch-gpu.sh index bb6cd9a..410357c 100755 --- a/exec-sbatch-gpu.sh +++ b/exec-sbatch-gpu.sh @@ -1,21 +1,18 @@ #!/bin/bash -#SBATCH --job-name=owl_abstract_encoding_similarities +#SBATCH --job-name=similarities_compute #SBATCH --chdir=/scratch/ofilangi/workspace/encoder-ontology-match-abstract -#SBATCH --output=out_process_igepp.txt +#SBATCH --output=planteome_annot_pubmeb.txt #SBATCH --ntasks=1 #SBATCH --gpus=1 -#SBATCH --mem=20G +#SBATCH --mem=10G ## sbatch -p gpu exec.sh -source ./check_slurm_memory.sh - -/local/env/envpython-3.9.5.sh -. env/bin/activate - -conffile=config/igepp.json - -python -m llm_semantic_annotator $conffile 1 - +. /local/env/envpython-3.9.5.sh +conffile=./pubmed-all.json +./exec.sh $conffile 1 +if [ $? -eq 0 ]; then + ./exec.sh $conffile 8 +fi