Version 3.12.0+galaxy* - 03/03/2020
- UPGRADE: upgrade the xcms version from 3.6.1 to 3.12.0 (see XCMS News)
Version 3.6.1+galaxy1 - 13/02/2020
- NEW: if a retention time ajustment have already been applied to your data. The function applyAdjustedRtime will replace raw retention times with adjusted retention times and so alloww to cumulate the ajustments.
Version 3.6.1.0 - 03/09/2019
- UPGRADE: upgrade the xcms version from 3.4.4 to 3.6.1 (see XCMS News)
Version 3.4.4.1 - 30/04/2019
- BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms.
Version 3.4.4.0 - 08/02/2019
- UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News)
Version 3.0.0.0 - 08/03/2018
- UPGRADE: upgrade the xcms version from 1.46.0 to 3.0.0. So refactoring of a lot of underlying codes and methods. Some parameters may have been renamed.
- NEW: a bunch of new options: Obiwarp.(centerSample, response, distFun, gapInit, gapExtend, factorDiag, factorGap, localAlignment, initPenalty)
- IMPROVEMENT: the advanced options are now in sections. It will allow you to access to all the parameters and to know their default values.
- CHANGE: removing of the TIC and BPC plots. You can new use the dedicated tool "xcms plot chromatogram"
Version 2.1.1 - 29/11/2017
- BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
Version 2.1.0 - 03/02/2017
- IMPROVEMENT: xcms.retcor can deal with merged individual data
Version 2.0.8 - 22/12/2016
- BUGFIX: when having only one group (i.e. one folder of raw data) the BPC and TIC pdf files do not contain any graph
Version 2.0.7 - 06/07/2016
- UPGRADE: upgrate the xcms version from 1.44.0 to 1.46.0
Version 2.0.6 - 04/04/2016
- TEST: refactoring to pass planemo test using conda dependencies
Version 2.0.5 - 10/02/2016
- BUGFIX: better management of errors. Datasets remained green although the process failed
- BUGFIX: some pdf remained empty even when the process succeed
- UPDATE: refactoring of internal management of inputs/outputs
- UPDATE: refactoring to feed the new report tool
Version 2.0.2 - 02/06/2015
- IMPROVEMENT: new datatype/dataset formats (rdata.xcms.raw, rdata.xcms.group, rdata.xcms.retcor ...) will facilitate the sequence of tools and so avoid incompatibility errors.
- IMPROVEMENT: parameter labels have changed to facilitate their reading.