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Support for BLAST DB v5 #124

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peterjc opened this issue Apr 23, 2020 · 2 comments · Fixed by galaxyproject/galaxy#9939
Open

Support for BLAST DB v5 #124

peterjc opened this issue Apr 23, 2020 · 2 comments · Fixed by galaxyproject/galaxy#9939
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@peterjc
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peterjc commented Apr 23, 2020

The new NCBI blast database format v5 will like require updates to datatypes/blast_datatypes/datatypes_conf.xml and then publishing to the ToolShed and updating the copy now bundled with Galaxy itself.
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peterjc commented Apr 23, 2020

Or, we deprecate the legacy BLAST datatype in the ToolShed, drop repository_dependencies.xml and focus on updating the datatype within Galaxy only. That might be better in the long term...

@abretaud abretaud mentioned this issue Jun 30, 2020
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peterjc commented Aug 21, 2020

Declaring our legacy datatypes obsolete and no longer using them in the TravisCI testing on #129

As part of the next tool shed update I need to mark http://toolshed.g2.bx.psu.edu/view/devteam/blast_datatypes as deprecated (on the Tool Shed).

@peterjc peterjc mentioned this issue Aug 21, 2020
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Add BLASTDBv5 datatype (for blast >=2.8.1) abretaud/galaxy
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