.appveyor.yml

skip_tags: true
clone_depth: 1

os: Visual Studio 2022

# Convert line endings for Windows (wanted test output)
init:
  - git config --global core.autocrlf true

environment:
  matrix:
    - PYTHON: "C:\\Python312-x64"

matrix:
  fast_finish: true

install:
  # If there's a newer build queued for the same PR, cancel this one
  - ps: if ($env:APPVEYOR_PULL_REQUEST_NUMBER -and $env:APPVEYOR_BUILD_NUMBER -ne ((Invoke-RestMethod `
        https://ci.appveyor.com/api/projects/$env:APPVEYOR_ACCOUNT_NAME/$env:APPVEYOR_PROJECT_SLUG/history?recordsNumber=50).builds | `
        Where-Object pullRequestId -eq $env:APPVEYOR_PULL_REQUEST_NUMBER)[0].buildNumber) { `
        throw "There are newer queued builds for this pull request, failing early." }

  # Prepend preferred Python to the PATH to make it the default
  # Will stick random binary tools there too
  - SET PATH=%PYTHON%;%PYTHON%\\Scripts;%PATH%
  # Check that we have the expected version and architecture for Python
  - python --version
  - python -m pip install -U pip setuptools virtualenv wheel build
  - python -m pip install -r requirements.txt
  - echo "Installing sqlite3"
  - curl -O "https://www3.sqlite.org/2022/sqlite-tools-win32-x86-3370200.zip"
  - unzip sqlite-tools-win32-x86-3370200.zip
  - mv sqlite-tools-win32-x86-3370200/sqlite3.exe %PYTHON%\\
  - echo "Installing flash"
  - curl -O "https://ccb.jhu.edu/software/FLASH/FLASH-1.2.11-windows-bin.zip"
  - unzip FLASH-1.2.11-windows-bin.zip
  - mv flash.exe %PYTHON%\\
  - flash --version
  - echo "Installing vsearch"
  - curl -L -O "https://github.com/torognes/vsearch/releases/download/v2.23.0/vsearch-2.23.0-win-x86_64.zip"
  - unzip vsearch-2.23.0-win-x86_64.zip
  - mv vsearch-2.23.0-win-x86_64\\bin\\vsearch.exe %PYTHON%\\
  - vsearch --version

build_script:
  # Build wheel
  - git checkout %BUILD_COMMIT%
  - echo "Bootstrapping to build DB"
  - python -m pip install -e .
  - rm -rf dist/* thapbi_pict/ITS1_DB.sqlite
  - cd database
  - bash build_ITS1_DB.sh
  - cd ..
  - git diff  # Confirm database/ITS1_DB.fasta unchanged
  - cp database/ITS1_DB.sqlite thapbi_pict/ITS1_DB.sqlite
  - chmod a-w thapbi_pict/ITS1_DB.sqlite
  - python -m pip uninstall --yes thapbi_pict
  - echo "Building tar-ball and then wheel"
  - python -m build
  - echo "Installing our wheel..."
  - cd dist
  - for %%w in (*.whl) do pip install --force-reinstall %%w
  - cd ..
  - echo "THAPBI PICT should now be installed"
  - thapbi_pict -v

test_script:
  # Change into an clean new directory:
  - mkdir for_testing
  - cd for_testing
  # extract test files (etc) from tar ball, run them:
  - for %%f in (../dist/thapbi_pict-*.tar.gz) do tar -zxvf ../dist/%%f
  - for /D %%d in (thapbi_pict-*) do cd %%d
  # Run the tests (and confirm the tar-ball is complete)
  - bash -c tests/run_tests.sh
  - cd ../..

artifacts:
  - path: "dist\\*"