From ef7f510d794c8941143a75b93d7d72894b30492b Mon Sep 17 00:00:00 2001 From: Kirill Bessonov Date: Tue, 3 Dec 2024 18:20:23 -0500 Subject: [PATCH] updated readme with updated sistr database url --- README.rst | 2 +- sistr/src/serovar_prediction/constants.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/README.rst b/README.rst index a9aa898..8ae3fc1 100644 --- a/README.rst +++ b/README.rst @@ -127,7 +127,7 @@ SISTR will automatically initialize database of *Salmonella* serovar determinati The SISTR database v1.3 got minor updates by collapsing some of the serovars with O24/O25 antigens detailed in `CHANGELOG.md `_ file - SISTR v1.1 database is available at https://zenodo.org/records/13618515 or via a direct url https://zenodo.org/records/13618515/files/SISTR_V_1.1_db.tar.gz?download=1 (used with SISTR < 1.1.3 ) -- SISTR v1.3 database is available at https://zenodo.org/records/13693495 or va a direct url https://zenodo.org/records/13693495/files/SISTR_V_1.1.3_db.tar.gz?download=1 (used with SISTR >= 1.1.3) +- SISTR v1.3 database is available at https://zenodo.org/records/14270992 or va a direct url https://zenodo.org/records/14270992/files/SISTR_V_1.1.3_db.tar.gz?download=1 (used with SISTR >= 1.1.3) Dependencies diff --git a/sistr/src/serovar_prediction/constants.py b/sistr/src/serovar_prediction/constants.py index cf37cf0..2eb68f9 100644 --- a/sistr/src/serovar_prediction/constants.py +++ b/sistr/src/serovar_prediction/constants.py @@ -8,7 +8,7 @@ CGMLST_SUBSPECIATION_DISTANCE_THRESHOLD = 0.9 MASH_SUBSPECIATION_DISTANCE_THRESHOLD = 0.01 -SISTR_DB_URL = 'https://zenodo.org/records/13693495/files/SISTR_V_1.1.3_db.tar.gz?download=1' +SISTR_DB_URL = 'https://zenodo.org/records/14270992/files/SISTR_V_1.1.3_db.tar.gz?download=1' SISTR_DATA_DIR = resource_filename('sistr','data') SEROVAR_TABLE_PATH = resource_filename('sistr', 'data/Salmonella-serotype_serogroup_antigen_table-WHO_2007.csv') WZX_FASTA_PATH = resource_filename('sistr', 'data/antigens/wzx.fasta')