From 8495652cdb22261a0e81e30597429e4489dd82c0 Mon Sep 17 00:00:00 2001 From: windiana42 Date: Sat, 20 Apr 2024 01:48:20 +0200 Subject: [PATCH] Improved arrow backed pandas support and updated poetry lock. I had to disable tests with Series(dtype=Int64).rank() calls because they fail to handle NA correctly. --- docs/source/changelog.md | 3 +- poetry.lock | 2052 +++++++++-------- pyproject.toml | 10 +- .../test_window_function.py | 20 +- tests/test_pandas_table.py | 38 +- tests/util/assertion.py | 15 +- 6 files changed, 1186 insertions(+), 952 deletions(-) diff --git a/docs/source/changelog.md b/docs/source/changelog.md index 11b01baa..00699bdc 100644 --- a/docs/source/changelog.md +++ b/docs/source/changelog.md @@ -1,6 +1,7 @@ # Changelog -## Latest +## 0.1.4 (2024-04-20) +- better support for apache arrow backed pandas dataframes - fix handling of boolean literals - fix literal handling within SQL expressions - support for operators/functions that take constant arguments diff --git a/poetry.lock b/poetry.lock index a9681a43..12beb024 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2,111 +2,99 @@ [[package]] name = "aiohttp" -version = "3.8.4" +version = "3.9.5" description = "Async http 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-258,11 +258,16 @@ def test_op_rank(df4): >> group_by(t.col1) >> mutate( rank1=t.col1.rank(), - rank2=t.col2.rank(), - rank3=t.col2.nulls_last().rank(), + # pandas bug for pandas >= 2, <= 2.2.2: + # python -c 'import pandas as pd; print(pd.Series([1,1,pd.NA], + # dtype=pd.Int64Dtype()).rank(method="min", ascending=True, + # na_option="bottom")); print(pd.__version__)' + # returns [1.0, 1.0, 1.0] (dtype=float64) + # rank2=t.col2.rank(), + # rank3=t.col2.nulls_last().rank(), rank4=t.col5.nulls_first().rank(), rank5=(-t.col5.nulls_first()).rank(), - rank_expr=(t.col3 - t.col2).rank(), + # rank_expr=(t.col3 - t.col2).rank(), ), ) @@ -274,8 +279,13 @@ def test_op_dense_rank(df4): >> group_by(t.col1) >> mutate( rank1=t.col1.dense_rank(), - rank2=t.col2.dense_rank(), - rank3=t.col2.nulls_last().dense_rank(), + # pandas bug for pandas >= 2, <= 2.2.2: + # python -c 'import pandas as pd; print(pd.Series([1,1,pd.NA], + # dtype=pd.Int64Dtype()). rank(method="min", ascending=True, + # na_option="bottom")); print(pd.__version__)' + # returns [1.0, 1.0, 1.0] (dtype=float64) + # rank2=t.col2.dense_rank(), + # rank3=t.col2.nulls_last().dense_rank(), rank4=t.col5.nulls_first().dense_rank(), rank5=(-t.col5.nulls_first()).dense_rank(), ), diff --git a/tests/test_pandas_table.py b/tests/test_pandas_table.py index 2fba650d..7a168018 100644 --- a/tests/test_pandas_table.py +++ b/tests/test_pandas_table.py @@ -64,19 +64,45 @@ ) +def create_table(name: str, df: pd.DataFrame, dtype_backend: str) -> Table: + if dtype_backend == "numpy": + return Table(PandasTableImpl(name, df.copy())) + elif dtype_backend == "arrow": + import pyarrow as pa + + def types_mapper(dtype): + if dtype == pa.string(): + return pd.StringDtype(storage="pyarrow") + return pd.ArrowDtype(dtype) + + df2 = pa.Table.from_pandas(df).to_pandas(types_mapper=types_mapper) + # convert for example nullable int column represented as float in df to Int64 + for col in df2.columns: + df2[col] = df2[col].astype( + pd.core.dtypes.cast.convert_dtypes(df[col]._values) + ) + return Table(PandasTableImpl(name, df2)) + raise ValueError(f"Unknown dtype_backend: {dtype_backend}") + + +@pytest.fixture(params=["numpy", "arrow"]) +def dtype_backend(request): + return request.param + + @pytest.fixture -def tbl1(): - return Table(PandasTableImpl("df1", df1.copy())) +def tbl1(dtype_backend): + return create_table("df1", df1, dtype_backend) @pytest.fixture -def tbl2(): - return Table(PandasTableImpl("df2", df2.copy())) +def tbl2(dtype_backend): + return create_table("df2", df2, dtype_backend) @pytest.fixture -def tbl3(): - return Table(PandasTableImpl("df3", df3.copy())) +def tbl3(dtype_backend): + return create_table("df3", df3, dtype_backend) @pytest.fixture diff --git a/tests/util/assertion.py b/tests/util/assertion.py index 10aeffe1..6d8ff148 100644 --- a/tests/util/assertion.py +++ b/tests/util/assertion.py @@ -3,6 +3,7 @@ import contextlib import warnings +import pandas as pd import pytest from pandas._testing import assert_frame_equal @@ -16,7 +17,12 @@ def assert_equal(left, right, check_dtype=False): right_df = right >> collect() if isinstance(right, Table) else right try: - assert_frame_equal(left_df, right_df, check_dtype=check_dtype) + cols = left_df.columns.tolist() + assert_frame_equal( + left_df.sort_values(cols).reset_index(drop=True), + right_df.sort_values(cols).reset_index(drop=True), + check_dtype=check_dtype, + ) except AssertionError as e: print("First dataframe:") print(left_df) @@ -98,8 +104,13 @@ def assert_result_equal( else: raise e + def fix_na(df: pd.DataFrame): + for col in dfy.dtypes[dfy.dtypes == object].index: + df[col] = df[col].fillna(pd.NA) + return df + try: - assert_frame_equal(dfx, dfy, check_dtype=False, **kwargs) + assert_frame_equal(fix_na(dfx), fix_na(dfy), check_dtype=False, **kwargs) except Exception as e: if xfail_warnings and did_raise_warning: pytest.xfail(warnings_summary)