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Integrate BBMap for Subsampling Step #25

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BobLiterman opened this issue Aug 25, 2017 · 2 comments
Open

Integrate BBMap for Subsampling Step #25

BobLiterman opened this issue Aug 25, 2017 · 2 comments
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BobLiterman commented Aug 25, 2017 •
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Subsampling via BBMap suite can specify total final desired bases, eliminating need to take read length into account.
@anderspitman
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This is completed, right? At least I noticed the lastest master requires BBMap and seems to use an executable from that package.

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BobLiterman commented Sep 12, 2017 •
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BBMap is currently used to rename scaffolds but this issue refers to the read subsampling step and as such, has not been addressed. The confusion is on my end for using a vague issue title.

@BobLiterman BobLiterman changed the title Integrate BBMap Integrate BBMap for Subsampling Step Sep 12, 2017
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