diff --git a/testing_data/output/extras_test/ds1/sample1.mgikit.sample_stats b/testing_data/output/extras_test/ds1/sample1.mgikit.sample_stats new file mode 100644 index 0000000..327a377 --- /dev/null +++ b/testing_data/output/extras_test/ds1/sample1.mgikit.sample_stats @@ -0,0 +1,2 @@ +job_number sample_id r1_qc_30 r2_qc_30 r3_qc_30 r1_bases r2_bases r3_bases r1_qc r2_qc r3_qc all_reads 0-mismatches +. sample1 167 0 0 200 200 0 6162 5600 0 4 4 diff --git a/testing_data/output/extras_test/ds1/sample1_S1_L01_R1_001.fastq.gz b/testing_data/output/extras_test/ds1/sample1_S1_L01_R1_001.fastq.gz new file mode 100644 index 0000000..10b3d5d Binary files /dev/null and b/testing_data/output/extras_test/ds1/sample1_S1_L01_R1_001.fastq.gz differ diff --git a/testing_data/output/extras_test/ds1/sample1_S1_L01_R2_001.fastq.gz b/testing_data/output/extras_test/ds1/sample1_S1_L01_R2_001.fastq.gz new file mode 100644 index 0000000..a841f06 Binary files /dev/null and b/testing_data/output/extras_test/ds1/sample1_S1_L01_R2_001.fastq.gz differ diff --git a/testing_data/output/extras_test/ds2/sample2.mgikit.sample_stats b/testing_data/output/extras_test/ds2/sample2.mgikit.sample_stats new file mode 100644 index 0000000..9fca998 --- /dev/null +++ b/testing_data/output/extras_test/ds2/sample2.mgikit.sample_stats @@ -0,0 +1,2 @@ +job_number sample_id r1_qc_30 r2_qc_30 r3_qc_30 r1_bases r2_bases r3_bases r1_qc r2_qc r3_qc all_reads 0-mismatches +. sample2 167 0 32 200 200 32 6162 5600 1120 4 4 diff --git a/testing_data/output/extras_test/ds2/sample2_S2_L01_R1_001.fastq.gz b/testing_data/output/extras_test/ds2/sample2_S2_L01_R1_001.fastq.gz new file mode 100644 index 0000000..1ad63b0 Binary files /dev/null and b/testing_data/output/extras_test/ds2/sample2_S2_L01_R1_001.fastq.gz differ diff --git a/testing_data/output/extras_test/ds2/sample2_S2_L01_R2_001.fastq.gz b/testing_data/output/extras_test/ds2/sample2_S2_L01_R2_001.fastq.gz new file mode 100644 index 0000000..ed52b35 Binary files /dev/null and b/testing_data/output/extras_test/ds2/sample2_S2_L01_R2_001.fastq.gz differ diff --git a/testing_data/output/extras_test/ds3/sample3.mgikit.sample_stats b/testing_data/output/extras_test/ds3/sample3.mgikit.sample_stats new file mode 100644 index 0000000..903c189 --- /dev/null +++ b/testing_data/output/extras_test/ds3/sample3.mgikit.sample_stats @@ -0,0 +1,2 @@ +job_number sample_id r1_qc_30 r2_qc_30 r3_qc_30 r1_bases r2_bases r3_bases r1_qc r2_qc r3_qc all_reads 0-mismatches +. sample3 56 0 0 56 180 40 1848 2340 520 2 2 diff --git a/testing_data/output/extras_test/ds3/sample3_S3_L01_R1_001.fastq.gz b/testing_data/output/extras_test/ds3/sample3_S3_L01_R1_001.fastq.gz new file mode 100644 index 0000000..ca868e5 Binary files /dev/null and b/testing_data/output/extras_test/ds3/sample3_S3_L01_R1_001.fastq.gz differ diff --git a/testing_data/output/extras_test/ds3/sample3_S3_L01_R2_001.fastq.gz b/testing_data/output/extras_test/ds3/sample3_S3_L01_R2_001.fastq.gz new file mode 100644 index 0000000..38f2d70 Binary files /dev/null and b/testing_data/output/extras_test/ds3/sample3_S3_L01_R2_001.fastq.gz differ diff --git a/testing_data/output/extras_test/ds5/sample1.mgikit.sample_stats b/testing_data/output/extras_test/ds5/sample1.mgikit.sample_stats new file mode 100644 index 0000000..327a377 --- /dev/null +++ b/testing_data/output/extras_test/ds5/sample1.mgikit.sample_stats @@ -0,0 +1,2 @@ +job_number sample_id r1_qc_30 r2_qc_30 r3_qc_30 r1_bases r2_bases r3_bases r1_qc r2_qc r3_qc all_reads 0-mismatches +. sample1 167 0 0 200 200 0 6162 5600 0 4 4 diff --git a/testing_data/output/extras_test/ds6/sample1_S1_L01_R1_001.fastq.gz b/testing_data/output/extras_test/ds6/sample1_S1_L01_R1_001.fastq.gz new file mode 100644 index 0000000..10b3d5d Binary files /dev/null and b/testing_data/output/extras_test/ds6/sample1_S1_L01_R1_001.fastq.gz differ diff --git a/testing_data/output/extras_test/ds6/sample1_S1_L01_R2_001.fastq.gz b/testing_data/output/extras_test/ds6/sample1_S1_L01_R2_001.fastq.gz new file mode 100644 index 0000000..a841f06 Binary files /dev/null and b/testing_data/output/extras_test/ds6/sample1_S1_L01_R2_001.fastq.gz differ diff --git a/testing_data/output/extras_test/ds7/sample1.mgikit.sample_stats b/testing_data/output/extras_test/ds7/sample1.mgikit.sample_stats new file mode 100644 index 0000000..fc6f987 --- /dev/null +++ b/testing_data/output/extras_test/ds7/sample1.mgikit.sample_stats @@ -0,0 +1,2 @@ +job_number sample_id r1_qc_30 r2_qc_30 r3_qc_30 r1_bases r2_bases r3_bases r1_qc r2_qc r3_qc all_reads 0-mismatches 1-mismatches +. sample1 167 0 0 200 200 0 6162 5600 0 4 0 4 diff --git a/testing_data/output/extras_test/ds7/sample1_S1_L01_R1_001.fastq.gz b/testing_data/output/extras_test/ds7/sample1_S1_L01_R1_001.fastq.gz new file mode 100644 index 0000000..10b3d5d Binary files /dev/null and b/testing_data/output/extras_test/ds7/sample1_S1_L01_R1_001.fastq.gz differ diff --git a/testing_data/output/extras_test/ds7/sample1_S1_L01_R2_001.fastq.gz b/testing_data/output/extras_test/ds7/sample1_S1_L01_R2_001.fastq.gz new file mode 100644 index 0000000..a841f06 Binary files /dev/null and b/testing_data/output/extras_test/ds7/sample1_S1_L01_R2_001.fastq.gz differ diff --git a/tests/integration_test.rs b/tests/integration_test.rs index 03a1098..c08f911 100755 --- a/tests/integration_test.rs +++ b/tests/integration_test.rs @@ -160,7 +160,7 @@ fn testing_template() { #[test] fn testing_demultiplex() { - for ds_itr_tmp in 1..2{//15{ + for ds_itr_tmp in 1..15{ let mut disable_illumina_format = false; let ds_itr_in = match ds_itr_tmp{ 6 => 1,