meta.json

{
    "meta_analysis.phenos": "gs://gbmi-analysis/09062020/conf/phenolist_09102020_noHCM.txt",
    "meta_analysis.summary_files": "gs://gbmi-analysis/09062020/conf/filelist_09102020_noHCM.txt",
    "meta_analysis.conf_template": "gs://gbmi-analysis/09062020/conf/{PHENO}.json",
    "meta_analysis.run_meta.method": "inv_var",
    "meta_analysis.run_meta.opts": "--is_het_test",
    "meta_analysis.run_meta.run_range.docker": "gcr.io/global-biobank-meta-analysis/meta:4bd48",
    "meta_analysis.run_meta.gather.loglog_ylim": 20,
    "meta_analysis.run_meta.gather.docker": "gcr.io/global-biobank-meta-analysis/plotv2:0.3",
    "meta_analysis.run_meta.add_rsids_af.docker": "gcr.io/global-biobank-meta-analysis/meta:4bd48",
    "meta_analysis.run_meta.add_rsids_af.file_ref": "gs://gbmi-analysis/gnomad/v3/gnomad_v3_b38_ref_all.rsid.gz",
    "meta_analysis.run_meta.add_rsids_af.p_thresh": 1e-5,
    "meta_analysis.run_meta.filter_cols.docker": "gcr.io/global-biobank-meta-analysis/saige:0.39.3",
    "meta_analysis.run_meta.filter_cols.out_template": "GBMI_{PHENO}_20200910.txt.gz",
    "meta_analysis.run_meta.filter_cols.p_thresh": 1e-5,
    "meta_analysis.run_meta.lift.docker": "gcr.io/global-biobank-meta-analysis/meta:4bd48",
    "meta_analysis.run_meta.lift.p_thresh": 1e-5,
    "meta_analysis.run_meta.plot.docker": "gcr.io/global-biobank-meta-analysis/plotv2:0.3",
    "meta_analysis.run_meta.plot.method": "inv_var",
    "meta_analysis.run_meta.annovar.docker": "gcr.io/global-biobank-meta-analysis/meta:4bd49"
}