From 9d4ef36e0b85b03320babad224ac5aebffc60a83 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 25 Mar 2024 07:18:43 +0000
Subject: [PATCH 01/29] Bump pytest-cov from 4.1.0 to 5.0.0

Bumps [pytest-cov](https://github.com/pytest-dev/pytest-cov) from 4.1.0 to 5.0.0.
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-cov/compare/v4.1.0...v5.0.0)

---
updated-dependencies:
- dependency-name: pytest-cov
  dependency-type: direct:development
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index 26d7a972..a882a198 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1503,7 +1503,6 @@
                 "sha256:fdfafb32984684eb03c2d83e1e51f64f0906b11e64482df3c5db936ce3839d48",
                 "sha256:ff7687ca3d7028d8a5f0ebae95a6e4827c5616b31a4ee1192bdfde697db110d4"
             ],
-            "index": "pypi",
             "markers": "python_version >= '3.8'",
             "version": "==7.4.4"
         },
@@ -1666,11 +1665,12 @@
         },
         "pytest-cov": {
             "hashes": [
-                "sha256:3904b13dfbfec47f003b8e77fd5b589cd11904a21ddf1ab38a64f204d6a10ef6",
-                "sha256:6ba70b9e97e69fcc3fb45bfeab2d0a138fb65c4d0d6a41ef33983ad114be8c3a"
+                "sha256:4f0764a1219df53214206bf1feea4633c3b558a2925c8b59f144f682861ce652",
+                "sha256:5837b58e9f6ebd335b0f8060eecce69b662415b16dc503883a02f45dfeb14857"
             ],
             "index": "pypi",
-            "version": "==4.1.0"
+            "markers": "python_version >= '3.8'",
+            "version": "==5.0.0"
         },
         "pytest-freezegun": {
             "hashes": [

From d918504338c6cbf74fb52054ccd2cc22c6e05d5f Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Fri, 12 Apr 2024 04:15:54 +0000
Subject: [PATCH 02/29] Bump idna from 3.6 to 3.7

Bumps [idna](https://github.com/kjd/idna) from 3.6 to 3.7.
- [Release notes](https://github.com/kjd/idna/releases)
- [Changelog](https://github.com/kjd/idna/blob/master/HISTORY.rst)
- [Commits](https://github.com/kjd/idna/compare/v3.6...v3.7)

---
updated-dependencies:
- dependency-name: idna
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index a882a198..5f10723b 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -513,11 +513,12 @@
         },
         "idna": {
             "hashes": [
-                "sha256:9ecdbbd083b06798ae1e86adcbfe8ab1479cf864e4ee30fe4e46a003d12491ca",
-                "sha256:c05567e9c24a6b9faaa835c4821bad0590fbb9d5779e7caa6e1cc4978e7eb24f"
+                "sha256:028ff3aadf0609c1fd278d8ea3089299412a7a8b9bd005dd08b9f8285bcb5cfc",
+                "sha256:82fee1fc78add43492d3a1898bfa6d8a904cc97d8427f683ed8e798d07761aa0"
             ],
+            "index": "pypi",
             "markers": "python_version >= '3.5'",
-            "version": "==3.6"
+            "version": "==3.7"
         },
         "importlib-metadata": {
             "hashes": [

From aa6d4b45eb4860a0afc261bf1cbdc3b75335b9a2 Mon Sep 17 00:00:00 2001
From: Shiv <44001656+SHIV5T3R@users.noreply.github.com>
Date: Fri, 12 Apr 2024 16:28:07 +0100
Subject: [PATCH 03/29] Modifed workflow config to keep older stable images

---
 .github/workflows/automated_release.yml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/.github/workflows/automated_release.yml b/.github/workflows/automated_release.yml
index b2d3c11d..d9ff7c01 100644
--- a/.github/workflows/automated_release.yml
+++ b/.github/workflows/automated_release.yml
@@ -114,6 +114,5 @@ jobs:
           account-type: org
           org-name: sanger
           keep-at-least: 5
-          skip-tags: latest
+          skip-tags: latest, *[!develop] # This will DELETE any images where the tag contains ANY characters in "develop", excluding '!'
           token: ${{ secrets.REMOVE_OLD_IMAGES }}
-

From 7a90436ca26feb15e29ad9e7bb08e100c1d21c6c Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Wed, 17 Apr 2024 02:26:46 +0000
Subject: [PATCH 04/29] Bump gunicorn from 21.2.0 to 22.0.0

Bumps [gunicorn](https://github.com/benoitc/gunicorn) from 21.2.0 to 22.0.0.
- [Release notes](https://github.com/benoitc/gunicorn/releases)
- [Commits](https://github.com/benoitc/gunicorn/compare/21.2.0...22.0.0)

---
updated-dependencies:
- dependency-name: gunicorn
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile      |  2 +-
 Pipfile.lock | 15 ++++++++-------
 2 files changed, 9 insertions(+), 8 deletions(-)

diff --git a/Pipfile b/Pipfile
index 80b8ca3c..d610bdf9 100644
--- a/Pipfile
+++ b/Pipfile
@@ -20,7 +20,7 @@ colorlog = "~=6.8"
 eve = "~=2.1"
 flask-apscheduler = "~=1.13"
 flask-cors = "~=4.0"
-gunicorn = "~=21.2"
+gunicorn = "~=22.0"
 openpyxl = "~=3.1"
 pandas = "~=2.0"
 pika = "~=1.3"
diff --git a/Pipfile.lock b/Pipfile.lock
index a882a198..e1431bc2 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "43317559b601ec467c52e93d393e1320fff6774ec438e4ac85192d07288091c5"
+            "sha256": "8ddddbb178d9c2af67075479223a9c3341ac072c5df3f3981f0fe7f0b05d23f0"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -505,11 +505,12 @@
         },
         "gunicorn": {
             "hashes": [
-                "sha256:3213aa5e8c24949e792bcacfc176fef362e7aac80b76c56f6b5122bf350722f0",
-                "sha256:88ec8bff1d634f98e61b9f65bc4bf3cd918a90806c6f5c48bc5603849ec81033"
+                "sha256:350679f91b24062c86e386e198a15438d53a7a8207235a78ba1b53df4c4378d9",
+                "sha256:4a0b436239ff76fb33f11c07a16482c521a7e09c1ce3cc293c2330afe01bec63"
             ],
             "index": "pypi",
-            "version": "==21.2.0"
+            "markers": "python_version >= '3.7'",
+            "version": "==22.0.0"
         },
         "idna": {
             "hashes": [
@@ -742,11 +743,11 @@
         },
         "packaging": {
             "hashes": [
-                "sha256:048fb0e9405036518eaaf48a55953c750c11e1a1b68e0dd1a9d62ed0c092cfc5",
-                "sha256:8c491190033a9af7e1d931d0b5dacc2ef47509b34dd0de67ed209b5203fc88c7"
+                "sha256:2ddfb553fdf02fb784c234c7ba6ccc288296ceabec964ad2eae3777778130bc5",
+                "sha256:eb82c5e3e56209074766e6885bb04b8c38a0c015d0a30036ebe7ece34c9989e9"
             ],
             "markers": "python_version >= '3.7'",
-            "version": "==23.2"
+            "version": "==24.0"
         },
         "pandas": {
             "hashes": [

From 0a6e49d211464eba849a4a6165a2001d9c3df0c6 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Thu, 18 Apr 2024 15:56:58 +0000
Subject: [PATCH 05/29] Bump aiohttp from 3.9.2 to 3.9.4

Bumps [aiohttp](https://github.com/aio-libs/aiohttp) from 3.9.2 to 3.9.4.
- [Release notes](https://github.com/aio-libs/aiohttp/releases)
- [Changelog](https://github.com/aio-libs/aiohttp/blob/master/CHANGES.rst)
- [Commits](https://github.com/aio-libs/aiohttp/compare/v3.9.2...v3.9.4)

---
updated-dependencies:
- dependency-name: aiohttp
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 326 +++++++++++++++++++++++++++------------------------
 1 file changed, 171 insertions(+), 155 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index a882a198..acba159e 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -18,86 +18,86 @@
     "default": {
         "aiohttp": {
             "hashes": [
-                "sha256:00a9abcea793c81e7f8778ca195a1714a64f6d7436c4c0bb168ad2a212627000",
-                "sha256:04fd8ffd2be73d42bcf55fd78cde7958eeee6d4d8f73c3846b7cba491ecdb570",
-                "sha256:07205ae0015e05c78b3288c1517afa000823a678a41594b3fdc870878d645305",
-                "sha256:07be2be7071723c3509ab5c08108d3a74f2181d4964e869f2504aaab68f8d3e8",
-                "sha256:0b500c5ad9c07639d48615a770f49618130e61be36608fc9bc2d9bae31732b8f",
-                "sha256:0e4ee4df741670560b1bc393672035418bf9063718fee05e1796bf867e995fad",
-                "sha256:103daf41ff3b53ba6fa09ad410793e2e76c9d0269151812e5aba4b9dd674a7e8",
-                "sha256:114da29f39eccd71b93a0fcacff178749a5c3559009b4a4498c2c173a6d74dff",
-                "sha256:122468f6fee5fcbe67cb07014a08c195b3d4c41ff71e7b5160a7bcc41d585a5f",
-                "sha256:1543e7fb00214fb4ccead42e6a7d86f3bb7c34751ec7c605cca7388e525fd0b4",
-                "sha256:158564d0d1020e0d3fe919a81d97aadad35171e13e7b425b244ad4337fc6793a",
-                "sha256:16a967685907003765855999af11a79b24e70b34dc710f77a38d21cd9fc4f5fe",
-                "sha256:186e94570433a004e05f31f632726ae0f2c9dee4762a9ce915769ce9c0a23d89",
-                "sha256:193cc1ccd69d819562cc7f345c815a6fc51d223b2ef22f23c1a0f67a88de9a72",
-                "sha256:1956e3ac376b1711c1533266dec4efd485f821d84c13ce1217d53e42c9e65f08",
-                "sha256:1c45e4e815ac6af3b72ca2bde9b608d2571737bb1e2d42299fc1ffdf60f6f9a1",
-                "sha256:200dc0246f0cb5405c80d18ac905c8350179c063ea1587580e3335bfc243ba6a",
-                "sha256:2dec87a556f300d3211decf018bfd263424f0690fcca00de94a837949fbcea02",
-                "sha256:328918a6c2835861ff7afa8c6d2c70c35fdaf996205d5932351bdd952f33fa2f",
-                "sha256:3cc158466f6a980a6095ee55174d1de5730ad7dec251be655d9a6a9dd7ea1ff9",
-                "sha256:3d8d962b439a859b3ded9a1e111a4615357b01620a546bc601f25b0211f2da81",
-                "sha256:3e1a800f988ce7c4917f34096f81585a73dbf65b5c39618b37926b1238cf9bc4",
-                "sha256:3f17999ae3927d8a9a823a1283b201344a0627272f92d4f3e3a4efe276972fe8",
-                "sha256:4112d8ba61fbd0abd5d43a9cb312214565b446d926e282a6d7da3f5a5aa71d36",
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-                "sha256:4c189b64bd6d9a403a1a3f86a3ab3acbc3dc41a68f73a268a4f683f89a4dec1f",
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+                "sha256:0593822dcdb9483d41f12041ff7c90d4d1033ec0e880bcfaf102919b715f47f1",
+                "sha256:10afd99b8251022ddf81eaed1d90f5a988e349ee7d779eb429fb07b670751e8c",
+                "sha256:17e7c051f53a0d2ebf33013a9cbf020bb4e098c4bc5bce6f7b0c962108d97eab",
+                "sha256:221204dbda5ef350e8db6287937621cf75e85778b296c9c52260b522231940ed",
+                "sha256:2506d9f7a9b91033201be9ffe7d89c6a54150b0578803cce5cb84a943d075bc3",
+                "sha256:268ba22d917655d1259af2d5659072b7dc11b4e1dc2cb9662fdd867d75afc6a4",
+                "sha256:2bd9d334412961125e9f68d5b73c1d0ab9ea3f74a58a475e6b119f5293eee7ba",
+                "sha256:305edae1dea368ce09bcb858cf5a63a064f3bff4767dec6fa60a0cc0e805a1d3",
+                "sha256:32dc814ddbb254f6170bca198fe307920f6c1308a5492f049f7f63554b88ef36",
+                "sha256:35d78076736f4a668d57ade00c65d30a8ce28719d8a42471b2a06ccd1a2e3063",
+                "sha256:3b2feaf1b7031ede1bc0880cec4b0776fd347259a723d625357bb4b82f62687b",
+                "sha256:418bb0038dfafeac923823c2e63226179976c76f981a2aaad0ad5d51f2229bca",
+                "sha256:419f009fa4cfde4d16a7fc070d64f36d70a8d35a90d71aa27670bba2be4fd039",
+                "sha256:47f6eb74e1ecb5e19a78f4a4228aa24df7fbab3b62d4a625d3f41194a08bd54f",
+                "sha256:4d79aad0ad4b980663316f26d9a492e8fab2af77c69c0f33780a56843ad2f89e",
+                "sha256:4f7e69a7fd4b5ce419238388e55abd220336bd32212c673ceabc57ccf3d05b55",
+                "sha256:52b8b4e06fc15519019e128abedaeb56412b106ab88b3c452188ca47a25c4093",
+                "sha256:56181093c10dbc6ceb8a29dfeea1e815e1dfdc020169203d87fd8d37616f73f9",
+                "sha256:63f41a909d182d2b78fe3abef557fcc14da50c7852f70ae3be60e83ff64edba5",
+                "sha256:689eb4356649ec9535b3686200b231876fb4cab4aca54e3bece71d37f50c1d13",
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@@ -513,11 +513,11 @@
         },
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+                "sha256:60d698e8179a42ec85172d12f50b1668254628425a6bd611aba022257cac1386",
+                "sha256:612d1156111ae11d14afaf3a0669ebf6c170dbb735e510a7438ffe2369a847fd",
+                "sha256:6214c5a5571802c33f80e6c84713b2c79e024995b9c5897f794b43e714daeec9",
+                "sha256:6939c95381e003f54cd4c5516740faba40cf5ad3eeff460c3ad1d3e0ea2549bf",
+                "sha256:69db76c09796b313331bb7048229e3bee7928eb62bab5e071e9f7fcc4879caee",
+                "sha256:6bf7a982604375a8d49b6cc1b781c1747f243d91b81035a9b43a2126c04766f5",
+                "sha256:766c8f7511df26d9f11cd3a8be623e59cca73d44643abab3f8c8c07620524e4a",
+                "sha256:76c0de87358b192de7ea9649beb392f107dcad9ad27276324c24c91774ca5271",
+                "sha256:76f067f5121dcecf0d63a67f29080b26c43c71a98b10c701b0677e4a065fbd54",
+                "sha256:7901c05ead4b3fb75113fb1dd33eb1253c6d3ee37ce93305acd9d38e0b5f21a4",
+                "sha256:79660376075cfd4b2c80f295528aa6beb2058fd289f4c9252f986751a4cd0496",
+                "sha256:79a6d2ba910adb2cbafc95dad936f8b9386e77c84c35bc0add315b856d7c3abb",
+                "sha256:7afcdd1fc07befad18ec4523a782cde4e93e0a2bf71239894b8d61ee578c1319",
+                "sha256:7be7047bd08accdb7487737631d25735c9a04327911de89ff1b26b81745bd4e3",
+                "sha256:7c6390cf87ff6234643428991b7359b5f59cc15155695deb4eda5c777d2b880f",
+                "sha256:7df704ca8cf4a073334e0427ae2345323613e4df18cc224f647f251e5e75a527",
+                "sha256:85f67aed7bb647f93e7520633d8f51d3cbc6ab96957c71272b286b2f30dc70ed",
+                "sha256:896ebdcf62683551312c30e20614305f53125750803b614e9e6ce74a96232604",
+                "sha256:92d16a3e275e38293623ebf639c471d3e03bb20b8ebb845237e0d3664914caef",
+                "sha256:99f60d34c048c5c2fabc766108c103612344c46e35d4ed9ae0673d33c8fb26e8",
+                "sha256:9fe7b0653ba3d9d65cbe7698cca585bf0f8c83dbbcc710db9c90f478e175f2d5",
+                "sha256:a3145cb08d8625b2d3fee1b2d596a8766352979c9bffe5d7833e0503d0f0b5e5",
+                "sha256:aeaf541ddbad8311a87dd695ed9642401131ea39ad7bc8cf3ef3967fd093b626",
+                "sha256:b55358304d7a73d7bdf5de62494aaf70bd33015831ffd98bc498b433dfe5b10c",
+                "sha256:b82cc8ace10ab5bd93235dfaab2021c70637005e1ac787031f4d1da63d493c1d",
+                "sha256:c0868d64af83169e4d4152ec612637a543f7a336e4a307b119e98042e852ad9c",
+                "sha256:c1c1496e73051918fcd4f58ff2e0f2f3066d1c76a0c6aeffd9b45d53243702cc",
+                "sha256:c9bf56195c6bbd293340ea82eafd0071cb3d450c703d2c93afb89f93b8386ccc",
+                "sha256:cbebcd5bcaf1eaf302617c114aa67569dd3f090dd0ce8ba9e35e9985b41ac35b",
+                "sha256:cd6c8fca38178e12c00418de737aef1261576bd1b6e8c6134d3e729a4e858b38",
+                "sha256:ceb3b7e6a0135e092de86110c5a74e46bda4bd4fbfeeb3a3bcec79c0f861e450",
+                "sha256:cf590b134eb70629e350691ecca88eac3e3b8b3c86992042fb82e3cb1830d5e1",
+                "sha256:d3eb1ceec286eba8220c26f3b0096cf189aea7057b6e7b7a2e60ed36b373b77f",
+                "sha256:d65f25da8e248202bd47445cec78e0025c0fe7582b23ec69c3b27a640dd7a8e3",
+                "sha256:d6f6d4f185481c9669b9447bf9d9cf3b95a0e9df9d169bbc17e363b7d5487755",
+                "sha256:d84a5c3a5f7ce6db1f999fb9438f686bc2e09d38143f2d93d8406ed2dd6b9226",
+                "sha256:d946b0a9eb8aaa590df1fe082cee553ceab173e6cb5b03239716338629c50c7a",
+                "sha256:dce1c6912ab9ff5f179eaf6efe7365c1f425ed690b03341911bf4939ef2f3046",
+                "sha256:de170c7b4fe6859beb8926e84f7d7d6c693dfe8e27372ce3b76f01c46e489fcf",
+                "sha256:e02021f87a5b6932fa6ce916ca004c4d441509d33bbdbeca70d05dff5e9d2479",
+                "sha256:e030047e85cbcedbfc073f71836d62dd5dadfbe7531cae27789ff66bc551bd5e",
+                "sha256:e0e79d91e71b9867c73323a3444724d496c037e578a0e1755ae159ba14f4f3d1",
+                "sha256:e4428b29611e989719874670fd152b6625500ad6c686d464e99f5aaeeaca175a",
+                "sha256:e4972624066095e52b569e02b5ca97dbd7a7ddd4294bf4e7247d52635630dd83",
+                "sha256:e7be68734bd8c9a513f2b0cfd508802d6609da068f40dc57d4e3494cefc92929",
+                "sha256:e8e94e6912639a02ce173341ff62cc1201232ab86b8a8fcc05572741a5dc7d93",
+                "sha256:ea1456df2a27c73ce51120fa2f519f1bea2f4a03a917f4a43c8707cf4cbbae1a",
+                "sha256:ebd8d160f91a764652d3e51ce0d2956b38efe37c9231cd82cfc0bed2e40b581c",
+                "sha256:eca2e9d0cc5a889850e9bbd68e98314ada174ff6ccd1129500103df7a94a7a44",
+                "sha256:edd08e6f2f1a390bf137080507e44ccc086353c8e98c657e666c017718561b89",
+                "sha256:f285e862d2f153a70586579c15c44656f888806ed0e5b56b64489afe4a2dbfba",
+                "sha256:f2a1dee728b52b33eebff5072817176c172050d44d67befd681609b4746e1c2e",
+                "sha256:f7e301075edaf50500f0b341543c41194d8df3ae5caf4702f2095f3ca73dd8da",
+                "sha256:fb616be3538599e797a2017cccca78e354c767165e8858ab5116813146041a24",
+                "sha256:fce28b3c8a81b6b36dfac9feb1de115bab619b3c13905b419ec71d03a3fc1423",
+                "sha256:fe5d7785250541f7f5019ab9cba2c71169dc7d74d0f45253f8313f436458a4ef"
             ],
             "markers": "python_version >= '3.7'",
-            "version": "==6.0.4"
+            "version": "==6.0.5"
         },
         "mypy-extensions": {
             "hashes": [

From 11c969e877ea32c087516aab1946fe524cf26c42 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Fri, 26 Apr 2024 06:32:25 +0000
Subject: [PATCH 06/29] Bump black from 24.3.0 to 24.4.2

Bumps [black](https://github.com/psf/black) from 24.3.0 to 24.4.2.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.3.0...24.4.2)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 58 ++++++++++++++++++++++++++--------------------------
 1 file changed, 29 insertions(+), 29 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index a882a198..3b9851a2 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1306,32 +1306,32 @@
         },
         "black": {
             "hashes": [
-                "sha256:2818cf72dfd5d289e48f37ccfa08b460bf469e67fb7c4abb07edc2e9f16fb63f",
-                "sha256:41622020d7120e01d377f74249e677039d20e6344ff5851de8a10f11f513bf93",
-                "sha256:4acf672def7eb1725f41f38bf6bf425c8237248bb0804faa3965c036f7672d11",
-                "sha256:4be5bb28e090456adfc1255e03967fb67ca846a03be7aadf6249096100ee32d0",
-                "sha256:4f1373a7808a8f135b774039f61d59e4be7eb56b2513d3d2f02a8b9365b8a8a9",
-                "sha256:56f52cfbd3dabe2798d76dbdd299faa046a901041faf2cf33288bc4e6dae57b5",
-                "sha256:65b76c275e4c1c5ce6e9870911384bff5ca31ab63d19c76811cb1fb162678213",
-                "sha256:65c02e4ea2ae09d16314d30912a58ada9a5c4fdfedf9512d23326128ac08ac3d",
-                "sha256:6905238a754ceb7788a73f02b45637d820b2f5478b20fec82ea865e4f5d4d9f7",
-                "sha256:79dcf34b33e38ed1b17434693763301d7ccbd1c5860674a8f871bd15139e7837",
-                "sha256:7bb041dca0d784697af4646d3b62ba4a6b028276ae878e53f6b4f74ddd6db99f",
-                "sha256:7d5e026f8da0322b5662fa7a8e752b3fa2dac1c1cbc213c3d7ff9bdd0ab12395",
-                "sha256:9f50ea1132e2189d8dff0115ab75b65590a3e97de1e143795adb4ce317934995",
-                "sha256:a0c9c4a0771afc6919578cec71ce82a3e31e054904e7197deacbc9382671c41f",
-                "sha256:aadf7a02d947936ee418777e0247ea114f78aff0d0959461057cae8a04f20597",
-                "sha256:b5991d523eee14756f3c8d5df5231550ae8993e2286b8014e2fdea7156ed0959",
-                "sha256:bf21b7b230718a5f08bd32d5e4f1db7fc8788345c8aea1d155fc17852b3410f5",
-                "sha256:c45f8dff244b3c431b36e3224b6be4a127c6aca780853574c00faf99258041eb",
-                "sha256:c7ed6668cbbfcd231fa0dc1b137d3e40c04c7f786e626b405c62bcd5db5857e4",
-                "sha256:d7de8d330763c66663661a1ffd432274a2f92f07feeddd89ffd085b5744f85e7",
-                "sha256:e19cb1c6365fd6dc38a6eae2dcb691d7d83935c10215aef8e6c38edee3f77abd",
-                "sha256:e2af80566f43c85f5797365077fb64a393861a3730bd110971ab7a0c94e873e7"
+                "sha256:257d724c2c9b1660f353b36c802ccece186a30accc7742c176d29c146df6e474",
+                "sha256:37aae07b029fa0174d39daf02748b379399b909652a806e5708199bd93899da1",
+                "sha256:415e686e87dbbe6f4cd5ef0fbf764af7b89f9057b97c908742b6008cc554b9c0",
+                "sha256:48a85f2cb5e6799a9ef05347b476cce6c182d6c71ee36925a6c194d074336ef8",
+                "sha256:7768a0dbf16a39aa5e9a3ded568bb545c8c2727396d063bbaf847df05b08cd96",
+                "sha256:7e122b1c4fb252fd85df3ca93578732b4749d9be076593076ef4d07a0233c3e1",
+                "sha256:88c57dc656038f1ab9f92b3eb5335ee9b021412feaa46330d5eba4e51fe49b04",
+                "sha256:8e537d281831ad0e71007dcdcbe50a71470b978c453fa41ce77186bbe0ed6021",
+                "sha256:98e123f1d5cfd42f886624d84464f7756f60ff6eab89ae845210631714f6db94",
+                "sha256:accf49e151c8ed2c0cdc528691838afd217c50412534e876a19270fea1e28e2d",
+                "sha256:b1530ae42e9d6d5b670a34db49a94115a64596bc77710b1d05e9801e62ca0a7c",
+                "sha256:b9176b9832e84308818a99a561e90aa479e73c523b3f77afd07913380ae2eab7",
+                "sha256:bdde6f877a18f24844e381d45e9947a49e97933573ac9d4345399be37621e26c",
+                "sha256:be8bef99eb46d5021bf053114442914baeb3649a89dc5f3a555c88737e5e98fc",
+                "sha256:bf10f7310db693bb62692609b397e8d67257c55f949abde4c67f9cc574492cc7",
+                "sha256:c872b53057f000085da66a19c55d68f6f8ddcac2642392ad3a355878406fbd4d",
+                "sha256:d36ed1124bb81b32f8614555b34cc4259c3fbc7eec17870e8ff8ded335b58d8c",
+                "sha256:da33a1a5e49c4122ccdfd56cd021ff1ebc4a1ec4e2d01594fef9b6f267a9e741",
+                "sha256:dd1b5a14e417189db4c7b64a6540f31730713d173f0b63e55fabd52d61d8fdce",
+                "sha256:e151054aa00bad1f4e1f04919542885f89f5f7d086b8a59e5000e6c616896ffb",
+                "sha256:eaea3008c281f1038edb473c1aa8ed8143a5535ff18f978a318f10302b254063",
+                "sha256:ef703f83fc32e131e9bcc0a5094cfe85599e7109f896fe8bc96cc402f3eb4b6e"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.8'",
-            "version": "==24.3.0"
+            "version": "==24.4.2"
         },
         "certifi": {
             "hashes": [
@@ -1624,11 +1624,11 @@
         },
         "platformdirs": {
             "hashes": [
-                "sha256:0614df2a2f37e1a662acbd8e2b25b92ccf8632929bc6d43467e17fe89c75e068",
-                "sha256:ef0cc731df711022c174543cb70a9b5bd22e5a9337c8624ef2c2ceb8ddad8768"
+                "sha256:031cd18d4ec63ec53e82dceaac0417d218a6863f7745dfcc9efe7793b7039bdf",
+                "sha256:17d5a1161b3fd67b390023cb2d3b026bbd40abde6fdb052dfbd3a29c3ba22ee1"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==4.2.0"
+            "version": "==4.2.1"
         },
         "pluggy": {
             "hashes": [
@@ -1803,11 +1803,11 @@
         },
         "typing-extensions": {
             "hashes": [
-                "sha256:69b1a937c3a517342112fb4c6df7e72fc39a38e7891a5730ed4985b5214b5475",
-                "sha256:b0abd7c89e8fb96f98db18d86106ff1d90ab692004eb746cf6eda2682f91b3cb"
+                "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0",
+                "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"
             ],
             "markers": "python_version < '3.11'",
-            "version": "==4.10.0"
+            "version": "==4.11.0"
         },
         "urllib3": {
             "hashes": [

From 5788f2062368be78659307d126a32bce8ff4a66f Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 29 Apr 2024 06:28:12 +0000
Subject: [PATCH 07/29] Bump flake8-bugbear from 24.2.6 to 24.4.26

Bumps [flake8-bugbear](https://github.com/PyCQA/flake8-bugbear) from 24.2.6 to 24.4.26.
- [Release notes](https://github.com/PyCQA/flake8-bugbear/releases)
- [Commits](https://github.com/PyCQA/flake8-bugbear/compare/24.2.6...24.4.26)

---
updated-dependencies:
- dependency-name: flake8-bugbear
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index a882a198..29aeac4c 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1525,12 +1525,12 @@
         },
         "flake8-bugbear": {
             "hashes": [
-                "sha256:663ef5de80cd32aacd39d362212983bc4636435a6f83700b4ed35acbd0b7d1b8",
-                "sha256:f9cb5f2a9e792dd80ff68e89a14c12eed8620af8b41a49d823b7a33064ac9658"
+                "sha256:cb430dd86bc821d79ccc0b030789a9c87a47a369667f12ba06e80f11305e8258",
+                "sha256:ff8d4ba5719019ebf98e754624c30c05cef0dadcf18a65d91c7567300e52a130"
             ],
             "index": "pypi",
             "markers": "python_full_version >= '3.8.1'",
-            "version": "==24.2.6"
+            "version": "==24.4.26"
         },
         "freezegun": {
             "hashes": [

From 71ec07cca8c31fb7ada95b648316d396b008db36 Mon Sep 17 00:00:00 2001
From: Stuart McHattie <sm49@sanger.ac.uk>
Date: Tue, 30 Apr 2024 16:46:32 +0100
Subject: [PATCH 08/29] Use v3 Codecov action in CI test workflow

---
 .github/workflows/ci.yml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 2b88b956..47d16210 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -132,4 +132,6 @@ jobs:
         run: |
           python -m pytest -x
       - name: Upload coverage to Codecov
-        uses: codecov/codecov-action@v1
+        uses: codecov/codecov-action@v3
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

From 261e22326caa3afacc32c42699a709211769aa4c Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 6 May 2024 19:28:36 +0000
Subject: [PATCH 09/29] Bump werkzeug from 3.0.1 to 3.0.3

Bumps [werkzeug](https://github.com/pallets/werkzeug) from 3.0.1 to 3.0.3.
- [Release notes](https://github.com/pallets/werkzeug/releases)
- [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst)
- [Commits](https://github.com/pallets/werkzeug/compare/3.0.1...3.0.3)

---
updated-dependencies:
- dependency-name: werkzeug
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 129 ++++++++++++++++++++++++++-------------------------
 1 file changed, 65 insertions(+), 64 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index 29aeac4c..fa493ca5 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -546,69 +546,69 @@
         },
         "markupsafe": {
             "hashes": [
-                "sha256:05fb21170423db021895e1ea1e1f3ab3adb85d1c2333cbc2310f2a26bc77272e",
-                "sha256:0a4e4a1aff6c7ac4cd55792abf96c915634c2b97e3cc1c7129578aa68ebd754e",
-                "sha256:10bbfe99883db80bdbaff2dcf681dfc6533a614f700da1287707e8a5d78a8431",
-                "sha256:134da1eca9ec0ae528110ccc9e48041e0828d79f24121a1a146161103c76e686",
-                "sha256:14ff806850827afd6b07a5f32bd917fb7f45b046ba40c57abdb636674a8b559c",
-                "sha256:1577735524cdad32f9f694208aa75e422adba74f1baee7551620e43a3141f559",
-                "sha256:1b40069d487e7edb2676d3fbdb2b0829ffa2cd63a2ec26c4938b2d34391b4ecc",
-                "sha256:1b8dd8c3fd14349433c79fa8abeb573a55fc0fdd769133baac1f5e07abf54aeb",
-                "sha256:1f67c7038d560d92149c060157d623c542173016c4babc0c1913cca0564b9939",
-                "sha256:282c2cb35b5b673bbcadb33a585408104df04f14b2d9b01d4c345a3b92861c2c",
-                "sha256:2c1b19b3aaacc6e57b7e25710ff571c24d6c3613a45e905b1fde04d691b98ee0",
-                "sha256:2ef12179d3a291be237280175b542c07a36e7f60718296278d8593d21ca937d4",
-                "sha256:338ae27d6b8745585f87218a3f23f1512dbf52c26c28e322dbe54bcede54ccb9",
-                "sha256:3c0fae6c3be832a0a0473ac912810b2877c8cb9d76ca48de1ed31e1c68386575",
-                "sha256:3fd4abcb888d15a94f32b75d8fd18ee162ca0c064f35b11134be77050296d6ba",
-                "sha256:42de32b22b6b804f42c5d98be4f7e5e977ecdd9ee9b660fda1a3edf03b11792d",
-                "sha256:47d4f1c5f80fc62fdd7777d0d40a2e9dda0a05883ab11374334f6c4de38adffd",
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+                "sha256:8dd717634f5a044f860435c1d8c16a270ddf0ef8588d4887037c5028b859b0c3",
+                "sha256:8dec4936e9c3100156f8a2dc89c4b88d5c435175ff03413b443469c7c8c5f4d1",
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+                "sha256:ac07bad82163452a6884fe8fa0963fb98c2346ba78d779ec06bd7a6262132aee",
+                "sha256:ae2ad8ae6ebee9d2d94b17fb62763125f3f374c25618198f40cbb8b525411900",
+                "sha256:b91c037585eba9095565a3556f611e3cbfaa42ca1e865f7b8015fe5c7336d5a5",
+                "sha256:bc1667f8b83f48511b94671e0e441401371dfd0f0a795c7daa4a3cd1dde55bea",
+                "sha256:bec0a414d016ac1a18862a519e54b2fd0fc8bbfd6890376898a6c0891dd82e9f",
+                "sha256:bf50cd79a75d181c9181df03572cdce0fbb75cc353bc350712073108cba98de5",
+                "sha256:bff1b4290a66b490a2f4719358c0cdcd9bafb6b8f061e45c7a2460866bf50c2e",
+                "sha256:c061bb86a71b42465156a3ee7bd58c8c2ceacdbeb95d05a99893e08b8467359a",
+                "sha256:c8b29db45f8fe46ad280a7294f5c3ec36dbac9491f2d1c17345be8e69cc5928f",
+                "sha256:ce409136744f6521e39fd8e2a24c53fa18ad67aa5bc7c2cf83645cce5b5c4e50",
+                "sha256:d050b3361367a06d752db6ead6e7edeb0009be66bc3bae0ee9d97fb326badc2a",
+                "sha256:d283d37a890ba4c1ae73ffadf8046435c76e7bc2247bbb63c00bd1a709c6544b",
+                "sha256:d9fad5155d72433c921b782e58892377c44bd6252b5af2f67f16b194987338a4",
+                "sha256:daa4ee5a243f0f20d528d939d06670a298dd39b1ad5f8a72a4275124a7819eff",
+                "sha256:db0b55e0f3cc0be60c1f19efdde9a637c32740486004f20d1cff53c3c0ece4d2",
+                "sha256:e61659ba32cf2cf1481e575d0462554625196a1f2fc06a1c777d3f48e8865d46",
+                "sha256:ea3d8a3d18833cf4304cd2fc9cbb1efe188ca9b5efef2bdac7adc20594a0e46b",
+                "sha256:ec6a563cff360b50eed26f13adc43e61bc0c04d94b8be985e6fb24b81f6dcfdf",
+                "sha256:f5dfb42c4604dddc8e4305050aa6deb084540643ed5804d7455b5df8fe16f5e5",
+                "sha256:fa173ec60341d6bb97a89f5ea19c85c5643c1e7dedebc22f5181eb73573142c5",
+                "sha256:fa9db3f79de01457b03d4f01b34cf91bc0048eb2c3846ff26f66687c2f6d16ab",
+                "sha256:fce659a462a1be54d2ffcacea5e3ba2d74daa74f30f5f143fe0c58636e355fdd",
+                "sha256:ffee1f21e5ef0d712f9033568f8344d5da8cc2869dbd08d87c84656e6a2d2f68"
             ],
             "markers": "python_version >= '3.7'",
-            "version": "==2.1.3"
+            "version": "==2.1.5"
         },
         "multidict": {
             "hashes": [
@@ -1184,11 +1184,12 @@
         },
         "werkzeug": {
             "hashes": [
-                "sha256:507e811ecea72b18a404947aded4b3390e1db8f826b494d76550ef45bb3b1dcc",
-                "sha256:90a285dc0e42ad56b34e696398b8122ee4c681833fb35b8334a095d82c56da10"
+                "sha256:097e5bfda9f0aba8da6b8545146def481d06aa7d3266e7448e2cccf67dd8bd18",
+                "sha256:fc9645dc43e03e4d630d23143a04a7f947a9a3b5727cd535fdfe155a17cc48c8"
             ],
+            "index": "pypi",
             "markers": "python_version >= '3.8'",
-            "version": "==3.0.1"
+            "version": "==3.0.3"
         },
         "yarl": {
             "hashes": [

From 11a8461395b56324db3d02e265c2df6d0ec7089d Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 6 May 2024 20:57:11 +0000
Subject: [PATCH 10/29] Bump jinja2 from 3.1.3 to 3.1.4

Bumps [jinja2](https://github.com/pallets/jinja) from 3.1.3 to 3.1.4.
- [Release notes](https://github.com/pallets/jinja/releases)
- [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst)
- [Commits](https://github.com/pallets/jinja/compare/3.1.3...3.1.4)

---
updated-dependencies:
- dependency-name: jinja2
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 128 +++++++++++++++++++++++++--------------------------
 1 file changed, 64 insertions(+), 64 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index 29aeac4c..4d5eef19 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -537,78 +537,78 @@
         },
         "jinja2": {
             "hashes": [
-                "sha256:7d6d50dd97d52cbc355597bd845fabfbac3f551e1f99619e39a35ce8c370b5fa",
-                "sha256:ac8bd6544d4bb2c9792bf3a159e80bba8fda7f07e81bc3aed565432d5925ba90"
+                "sha256:4a3aee7acbbe7303aede8e9648d13b8bf88a429282aa6122a993f0ac800cb369",
+                "sha256:bc5dd2abb727a5319567b7a813e6a2e7318c39f4f487cfe6c89c6f9c7d25197d"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.7'",
-            "version": "==3.1.3"
+            "version": "==3.1.4"
         },
         "markupsafe": {
             "hashes": [
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-                "sha256:10bbfe99883db80bdbaff2dcf681dfc6533a614f700da1287707e8a5d78a8431",
-                "sha256:134da1eca9ec0ae528110ccc9e48041e0828d79f24121a1a146161103c76e686",
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-                "sha256:b076b6226fb84157e3f7c971a47ff3a679d837cf338547532ab866c57930dbee",
-                "sha256:b7ff0f54cb4ff66dd38bebd335a38e2c22c41a8ee45aa608efc890ac3e3931bc",
-                "sha256:bfce63a9e7834b12b87c64d6b155fdd9b3b96191b6bd334bf37db7ff1fe457f2",
-                "sha256:c011a4149cfbcf9f03994ec2edffcb8b1dc2d2aede7ca243746df97a5d41ce48",
-                "sha256:c9c804664ebe8f83a211cace637506669e7890fec1b4195b505c214e50dd4eb7",
-                "sha256:ca379055a47383d02a5400cb0d110cef0a776fc644cda797db0c5696cfd7e18e",
-                "sha256:cb0932dc158471523c9637e807d9bfb93e06a95cbf010f1a38b98623b929ef2b",
-                "sha256:cd0f502fe016460680cd20aaa5a76d241d6f35a1c3350c474bac1273803893fa",
-                "sha256:ceb01949af7121f9fc39f7d27f91be8546f3fb112c608bc4029aef0bab86a2a5",
-                "sha256:d080e0a5eb2529460b30190fcfcc4199bd7f827663f858a226a81bc27beaa97e",
-                "sha256:dd15ff04ffd7e05ffcb7fe79f1b98041b8ea30ae9234aed2a9168b5797c3effb",
-                "sha256:df0be2b576a7abbf737b1575f048c23fb1d769f267ec4358296f31c2479db8f9",
-                "sha256:e09031c87a1e51556fdcb46e5bd4f59dfb743061cf93c4d6831bf894f125eb57",
-                "sha256:e4dd52d80b8c83fdce44e12478ad2e85c64ea965e75d66dbeafb0a3e77308fcc",
-                "sha256:f698de3fd0c4e6972b92290a45bd9b1536bffe8c6759c62471efaa8acb4c37bc",
-                "sha256:fec21693218efe39aa7f8599346e90c705afa52c5b31ae019b2e57e8f6542bb2",
-                "sha256:ffcc3f7c66b5f5b7931a5aa68fc9cecc51e685ef90282f4a82f0f5e9b704ad11"
+                "sha256:00e046b6dd71aa03a41079792f8473dc494d564611a8f89bbbd7cb93295ebdcf",
+                "sha256:075202fa5b72c86ad32dc7d0b56024ebdbcf2048c0ba09f1cde31bfdd57bcfff",
+                "sha256:0e397ac966fdf721b2c528cf028494e86172b4feba51d65f81ffd65c63798f3f",
+                "sha256:17b950fccb810b3293638215058e432159d2b71005c74371d784862b7e4683f3",
+                "sha256:1f3fbcb7ef1f16e48246f704ab79d79da8a46891e2da03f8783a5b6fa41a9532",
+                "sha256:2174c595a0d73a3080ca3257b40096db99799265e1c27cc5a610743acd86d62f",
+                "sha256:2b7c57a4dfc4f16f7142221afe5ba4e093e09e728ca65c51f5620c9aaeb9a617",
+                "sha256:2d2d793e36e230fd32babe143b04cec8a8b3eb8a3122d2aceb4a371e6b09b8df",
+                "sha256:30b600cf0a7ac9234b2638fbc0fb6158ba5bdcdf46aeb631ead21248b9affbc4",
+                "sha256:397081c1a0bfb5124355710fe79478cdbeb39626492b15d399526ae53422b906",
+                "sha256:3a57fdd7ce31c7ff06cdfbf31dafa96cc533c21e443d57f5b1ecc6cdc668ec7f",
+                "sha256:3c6b973f22eb18a789b1460b4b91bf04ae3f0c4234a0a6aa6b0a92f6f7b951d4",
+                "sha256:3e53af139f8579a6d5f7b76549125f0d94d7e630761a2111bc431fd820e163b8",
+                "sha256:4096e9de5c6fdf43fb4f04c26fb114f61ef0bf2e5604b6ee3019d51b69e8c371",
+                "sha256:4275d846e41ecefa46e2015117a9f491e57a71ddd59bbead77e904dc02b1bed2",
+                "sha256:4c31f53cdae6ecfa91a77820e8b151dba54ab528ba65dfd235c80b086d68a465",
+                "sha256:4f11aa001c540f62c6166c7726f71f7573b52c68c31f014c25cc7901deea0b52",
+                "sha256:5049256f536511ee3f7e1b3f87d1d1209d327e818e6ae1365e8653d7e3abb6a6",
+                "sha256:58c98fee265677f63a4385256a6d7683ab1832f3ddd1e66fe948d5880c21a169",
+                "sha256:598e3276b64aff0e7b3451b72e94fa3c238d452e7ddcd893c3ab324717456bad",
+                "sha256:5b7b716f97b52c5a14bffdf688f971b2d5ef4029127f1ad7a513973cfd818df2",
+                "sha256:5dedb4db619ba5a2787a94d877bc8ffc0566f92a01c0ef214865e54ecc9ee5e0",
+                "sha256:619bc166c4f2de5caa5a633b8b7326fbe98e0ccbfacabd87268a2b15ff73a029",
+                "sha256:629ddd2ca402ae6dbedfceeba9c46d5f7b2a61d9749597d4307f943ef198fc1f",
+                "sha256:656f7526c69fac7f600bd1f400991cc282b417d17539a1b228617081106feb4a",
+                "sha256:6ec585f69cec0aa07d945b20805be741395e28ac1627333b1c5b0105962ffced",
+                "sha256:72b6be590cc35924b02c78ef34b467da4ba07e4e0f0454a2c5907f473fc50ce5",
+                "sha256:7502934a33b54030eaf1194c21c692a534196063db72176b0c4028e140f8f32c",
+                "sha256:7a68b554d356a91cce1236aa7682dc01df0edba8d043fd1ce607c49dd3c1edcf",
+                "sha256:7b2e5a267c855eea6b4283940daa6e88a285f5f2a67f2220203786dfa59b37e9",
+                "sha256:823b65d8706e32ad2df51ed89496147a42a2a6e01c13cfb6ffb8b1e92bc910bb",
+                "sha256:8590b4ae07a35970728874632fed7bd57b26b0102df2d2b233b6d9d82f6c62ad",
+                "sha256:8dd717634f5a044f860435c1d8c16a270ddf0ef8588d4887037c5028b859b0c3",
+                "sha256:8dec4936e9c3100156f8a2dc89c4b88d5c435175ff03413b443469c7c8c5f4d1",
+                "sha256:97cafb1f3cbcd3fd2b6fbfb99ae11cdb14deea0736fc2b0952ee177f2b813a46",
+                "sha256:a17a92de5231666cfbe003f0e4b9b3a7ae3afb1ec2845aadc2bacc93ff85febc",
+                "sha256:a549b9c31bec33820e885335b451286e2969a2d9e24879f83fe904a5ce59d70a",
+                "sha256:ac07bad82163452a6884fe8fa0963fb98c2346ba78d779ec06bd7a6262132aee",
+                "sha256:ae2ad8ae6ebee9d2d94b17fb62763125f3f374c25618198f40cbb8b525411900",
+                "sha256:b91c037585eba9095565a3556f611e3cbfaa42ca1e865f7b8015fe5c7336d5a5",
+                "sha256:bc1667f8b83f48511b94671e0e441401371dfd0f0a795c7daa4a3cd1dde55bea",
+                "sha256:bec0a414d016ac1a18862a519e54b2fd0fc8bbfd6890376898a6c0891dd82e9f",
+                "sha256:bf50cd79a75d181c9181df03572cdce0fbb75cc353bc350712073108cba98de5",
+                "sha256:bff1b4290a66b490a2f4719358c0cdcd9bafb6b8f061e45c7a2460866bf50c2e",
+                "sha256:c061bb86a71b42465156a3ee7bd58c8c2ceacdbeb95d05a99893e08b8467359a",
+                "sha256:c8b29db45f8fe46ad280a7294f5c3ec36dbac9491f2d1c17345be8e69cc5928f",
+                "sha256:ce409136744f6521e39fd8e2a24c53fa18ad67aa5bc7c2cf83645cce5b5c4e50",
+                "sha256:d050b3361367a06d752db6ead6e7edeb0009be66bc3bae0ee9d97fb326badc2a",
+                "sha256:d283d37a890ba4c1ae73ffadf8046435c76e7bc2247bbb63c00bd1a709c6544b",
+                "sha256:d9fad5155d72433c921b782e58892377c44bd6252b5af2f67f16b194987338a4",
+                "sha256:daa4ee5a243f0f20d528d939d06670a298dd39b1ad5f8a72a4275124a7819eff",
+                "sha256:db0b55e0f3cc0be60c1f19efdde9a637c32740486004f20d1cff53c3c0ece4d2",
+                "sha256:e61659ba32cf2cf1481e575d0462554625196a1f2fc06a1c777d3f48e8865d46",
+                "sha256:ea3d8a3d18833cf4304cd2fc9cbb1efe188ca9b5efef2bdac7adc20594a0e46b",
+                "sha256:ec6a563cff360b50eed26f13adc43e61bc0c04d94b8be985e6fb24b81f6dcfdf",
+                "sha256:f5dfb42c4604dddc8e4305050aa6deb084540643ed5804d7455b5df8fe16f5e5",
+                "sha256:fa173ec60341d6bb97a89f5ea19c85c5643c1e7dedebc22f5181eb73573142c5",
+                "sha256:fa9db3f79de01457b03d4f01b34cf91bc0048eb2c3846ff26f66687c2f6d16ab",
+                "sha256:fce659a462a1be54d2ffcacea5e3ba2d74daa74f30f5f143fe0c58636e355fdd",
+                "sha256:ffee1f21e5ef0d712f9033568f8344d5da8cc2869dbd08d87c84656e6a2d2f68"
             ],
             "markers": "python_version >= '3.7'",
-            "version": "==2.1.3"
+            "version": "==2.1.5"
         },
         "multidict": {
             "hashes": [

From 16bb4173f6467d18475c1ca7410387c5f79436fa Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 21 May 2024 19:54:53 +0000
Subject: [PATCH 11/29] --- updated-dependencies: - dependency-name: pymysql  
 dependency-type: direct:production ...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index 29aeac4c..44772b81 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -894,11 +894,12 @@
         },
         "pymysql": {
             "hashes": [
-                "sha256:4f13a7df8bf36a51e81dd9f3605fede45a4878fe02f9236349fd82a3f0612f96",
-                "sha256:8969ec6d763c856f7073c4c64662882675702efcb114b4bcbb955aea3a069fa7"
+                "sha256:4de15da4c61dc132f4fb9ab763063e693d521a80fd0e87943b9a453dd4c19d6c",
+                "sha256:e127611aaf2b417403c60bf4dc570124aeb4a57f5f37b8e95ae399a42f904cd0"
             ],
             "index": "pypi",
-            "version": "==1.1.0"
+            "markers": "python_version >= '3.7'",
+            "version": "==1.1.1"
         },
         "pyodbc": {
             "hashes": [

From 1ec7288642f8afeb7e63e6477e15a69beab73326 Mon Sep 17 00:00:00 2001
From: Shiv <44001656+SHIV5T3R@users.noreply.github.com>
Date: Thu, 30 May 2024 13:00:04 +0100
Subject: [PATCH 12/29] Create assign_issue_number.yml

---
 .github/workflows/assign_issue_number.yml | 12 ++++++++++++
 1 file changed, 12 insertions(+)
 create mode 100644 .github/workflows/assign_issue_number.yml

diff --git a/.github/workflows/assign_issue_number.yml b/.github/workflows/assign_issue_number.yml
new file mode 100644
index 00000000..90630b1e
--- /dev/null
+++ b/.github/workflows/assign_issue_number.yml
@@ -0,0 +1,12 @@
+name: Assign Issue Number
+
+on:
+  issues:
+    types: [opened]
+
+jobs:
+  call-add-to-project:
+    uses: sanger/.github/.github/workflows/generate_issue_number.yml@master
+    secrets:
+      app_id: ${{ secrets.ISSUE_GEN_APP_ID }}
+      app_key: ${{ secrets.ISSUE_GEN_APP_KEY }}

From f9d8a2cacf5121bde3a65dd23cd14a96487599aa Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Wed, 5 Jun 2024 06:34:41 +0000
Subject: [PATCH 13/29] Bump pytest from 8.1.1 to 8.2.2

Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.1.1 to 8.2.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.1.1...8.2.2)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index 29aeac4c..b4fc5356 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1508,11 +1508,11 @@
         },
         "exceptiongroup": {
             "hashes": [
-                "sha256:4bfd3996ac73b41e9b9628b04e079f193850720ea5945fc96a08633c66912f14",
-                "sha256:91f5c769735f051a4290d52edd0858999b57e5876e9f85937691bd4c9fa3ed68"
+                "sha256:5258b9ed329c5bbdd31a309f53cbfb0b155341807f6ff7606a1e801a891b29ad",
+                "sha256:a4785e48b045528f5bfe627b6ad554ff32def154f42372786903b7abcfe1aa16"
             ],
             "markers": "python_version < '3.11'",
-            "version": "==1.2.0"
+            "version": "==1.2.1"
         },
         "flake8": {
             "hashes": [
@@ -1632,11 +1632,11 @@
         },
         "pluggy": {
             "hashes": [
-                "sha256:7db9f7b503d67d1c5b95f59773ebb58a8c1c288129a88665838012cfb07b8981",
-                "sha256:8c85c2876142a764e5b7548e7d9a0e0ddb46f5185161049a79b7e974454223be"
+                "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1",
+                "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.4.0"
+            "version": "==1.5.0"
         },
         "pycodestyle": {
             "hashes": [
@@ -1656,12 +1656,12 @@
         },
         "pytest": {
             "hashes": [
-                "sha256:2a8386cfc11fa9d2c50ee7b2a57e7d898ef90470a7a34c4b949ff59662bb78b7",
-                "sha256:ac978141a75948948817d360297b7aae0fcb9d6ff6bc9ec6d514b85d5a65c044"
+                "sha256:c434598117762e2bd304e526244f67bf66bbd7b5d6cf22138be51ff661980343",
+                "sha256:de4bb8104e201939ccdc688b27a89a7be2079b22e2bd2b07f806b6ba71117977"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.8'",
-            "version": "==8.1.1"
+            "version": "==8.2.2"
         },
         "pytest-cov": {
             "hashes": [

From 87e6dd1e06ba1adbe774da55023baba485e6f1cc Mon Sep 17 00:00:00 2001
From: Seena Nair <55585488+seenanair@users.noreply.github.com>
Date: Thu, 6 Jun 2024 13:59:50 +0100
Subject: [PATCH 14/29] Create add_prs_to_tech_debt_project.yml to add
 dependency updates to the technical debt project

---
 .../add_prs_to_tech_debt_project.yml          | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)
 create mode 100644 .github/workflows/add_prs_to_tech_debt_project.yml

diff --git a/.github/workflows/add_prs_to_tech_debt_project.yml b/.github/workflows/add_prs_to_tech_debt_project.yml
new file mode 100644
index 00000000..07d1e53d
--- /dev/null
+++ b/.github/workflows/add_prs_to_tech_debt_project.yml
@@ -0,0 +1,19 @@
+# Calls a reusable workflow in the .github repo,
+# which adds the PR that triggered this to the Technical Debt project board, if it is a depfu one.
+# Passes the 'PSD-AddToProject' GitHub App key and App Id as secrets to the reusable workflow.
+
+name: Add dependencies to technical debt project
+
+on:
+  # Triggered on creation of pull requests with any label,
+  # or when a label is added to an existing pull request.
+  pull_request:
+    types:
+      - labeled
+
+jobs:
+  call-workflow-add_to_technical_debt_project:
+    uses: sanger/.github/.github/workflows/add_to_tech_debt_project_reusable.yml@master
+    secrets:
+      app_id: ${{ secrets.ADD_TO_PROJECT_APP_ID_PSD }}
+      app_key: ${{ secrets.ADD_TO_PROJECT_APP_KEY_PSD }}
\ No newline at end of file

From 68f990e1f1879c073c1987325a3941e21bc67d52 Mon Sep 17 00:00:00 2001
From: Seena Nair <55585488+seenanair@users.noreply.github.com>
Date: Fri, 7 Jun 2024 12:35:55 +0100
Subject: [PATCH 15/29] New line added at end of file

---
 .github/workflows/add_prs_to_tech_debt_project.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/add_prs_to_tech_debt_project.yml b/.github/workflows/add_prs_to_tech_debt_project.yml
index 07d1e53d..221de81e 100644
--- a/.github/workflows/add_prs_to_tech_debt_project.yml
+++ b/.github/workflows/add_prs_to_tech_debt_project.yml
@@ -16,4 +16,4 @@ jobs:
     uses: sanger/.github/.github/workflows/add_to_tech_debt_project_reusable.yml@master
     secrets:
       app_id: ${{ secrets.ADD_TO_PROJECT_APP_ID_PSD }}
-      app_key: ${{ secrets.ADD_TO_PROJECT_APP_KEY_PSD }}
\ No newline at end of file
+      app_key: ${{ secrets.ADD_TO_PROJECT_APP_KEY_PSD }}

From c7c7f84242c2c1713c1dfb169f3587d23e9dac77 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Fri, 7 Jun 2024 13:15:12 +0000
Subject: [PATCH 16/29] Bump flask-cors from 4.0.0 to 4.0.1

Bumps [flask-cors](https://github.com/corydolphin/flask-cors) from 4.0.0 to 4.0.1.
- [Release notes](https://github.com/corydolphin/flask-cors/releases)
- [Changelog](https://github.com/corydolphin/flask-cors/blob/main/CHANGELOG.md)
- [Commits](https://github.com/corydolphin/flask-cors/compare/4.0.0...4.0.1)

---
updated-dependencies:
- dependency-name: flask-cors
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 173 +++++++++++++++++++++++++--------------------------
 1 file changed, 86 insertions(+), 87 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index 29aeac4c..37159fd0 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -183,11 +183,11 @@
         },
         "blinker": {
             "hashes": [
-                "sha256:c3f865d4d54db7abc53758a01601cf343fe55b84c1de4e3fa910e420b438d5b9",
-                "sha256:e6820ff6fa4e4d1d8e2747c2283749c3f547e4fee112b98555cdcdae32996182"
+                "sha256:1779309f71bf239144b9399d06ae925637cf6634cf6bd131104184531bf67c01",
+                "sha256:8f77b09d3bf7c795e969e9486f39c2c5e9c39d4ee07424be2bc594ece9642d83"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.7.0"
+            "version": "==1.8.2"
         },
         "cerberus": {
             "hashes": [
@@ -334,11 +334,11 @@
         },
         "flask": {
             "hashes": [
-                "sha256:21128f47e4e3b9d597a3e8521a329bf56909b690fcc3fa3e477725aa81367638",
-                "sha256:cfadcdb638b609361d29ec22360d6070a77d7463dcb3ab08d2c2f2f168845f58"
+                "sha256:34e815dfaa43340d1d15a5c3a02b8476004037eb4840b34910c6e21679d288f3",
+                "sha256:ceb27b0af3823ea2737928a4d99d125a06175b8512c445cbd9a9ce200ef76842"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==3.0.0"
+            "version": "==3.0.3"
         },
         "flask-apscheduler": {
             "hashes": [
@@ -350,11 +350,11 @@
         },
         "flask-cors": {
             "hashes": [
-                "sha256:bc3492bfd6368d27cfe79c7821df5a8a319e1a6d5eab277a3794be19bdc51783",
-                "sha256:f268522fcb2f73e2ecdde1ef45e2fd5c71cc48fe03cffb4b441c6d1b40684eb0"
+                "sha256:eeb69b342142fdbf4766ad99357a7f3876a2ceb77689dc10ff912aac06c389e4",
+                "sha256:f2a704e4458665580c074b714c4627dd5a306b333deb9074d0b1794dfa2fb677"
             ],
             "index": "pypi",
-            "version": "==4.0.0"
+            "version": "==4.0.1"
         },
         "frozenlist": {
             "hashes": [
@@ -521,94 +521,93 @@
         },
         "importlib-metadata": {
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             "markers": "python_version < '3.10'",
-            "version": "==6.8.0"
+            "version": "==7.1.0"
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         "itsdangerous": {
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-            "version": "==2.1.2"
+            "markers": "python_version >= '3.8'",
+            "version": "==2.2.0"
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         "jinja2": {
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+                "sha256:bec0a414d016ac1a18862a519e54b2fd0fc8bbfd6890376898a6c0891dd82e9f",
+                "sha256:bf50cd79a75d181c9181df03572cdce0fbb75cc353bc350712073108cba98de5",
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+                "sha256:d050b3361367a06d752db6ead6e7edeb0009be66bc3bae0ee9d97fb326badc2a",
+                "sha256:d283d37a890ba4c1ae73ffadf8046435c76e7bc2247bbb63c00bd1a709c6544b",
+                "sha256:d9fad5155d72433c921b782e58892377c44bd6252b5af2f67f16b194987338a4",
+                "sha256:daa4ee5a243f0f20d528d939d06670a298dd39b1ad5f8a72a4275124a7819eff",
+                "sha256:db0b55e0f3cc0be60c1f19efdde9a637c32740486004f20d1cff53c3c0ece4d2",
+                "sha256:e61659ba32cf2cf1481e575d0462554625196a1f2fc06a1c777d3f48e8865d46",
+                "sha256:ea3d8a3d18833cf4304cd2fc9cbb1efe188ca9b5efef2bdac7adc20594a0e46b",
+                "sha256:ec6a563cff360b50eed26f13adc43e61bc0c04d94b8be985e6fb24b81f6dcfdf",
+                "sha256:f5dfb42c4604dddc8e4305050aa6deb084540643ed5804d7455b5df8fe16f5e5",
+                "sha256:fa173ec60341d6bb97a89f5ea19c85c5643c1e7dedebc22f5181eb73573142c5",
+                "sha256:fa9db3f79de01457b03d4f01b34cf91bc0048eb2c3846ff26f66687c2f6d16ab",
+                "sha256:fce659a462a1be54d2ffcacea5e3ba2d74daa74f30f5f143fe0c58636e355fdd",
+                "sha256:ffee1f21e5ef0d712f9033568f8344d5da8cc2869dbd08d87c84656e6a2d2f68"
             ],
             "markers": "python_version >= '3.7'",
-            "version": "==2.1.3"
+            "version": "==2.1.5"
         },
         "multidict": {
             "hashes": [
@@ -1184,11 +1183,11 @@
         },
         "werkzeug": {
             "hashes": [
-                "sha256:507e811ecea72b18a404947aded4b3390e1db8f826b494d76550ef45bb3b1dcc",
-                "sha256:90a285dc0e42ad56b34e696398b8122ee4c681833fb35b8334a095d82c56da10"
+                "sha256:097e5bfda9f0aba8da6b8545146def481d06aa7d3266e7448e2cccf67dd8bd18",
+                "sha256:fc9645dc43e03e4d630d23143a04a7f947a9a3b5727cd535fdfe155a17cc48c8"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==3.0.1"
+            "version": "==3.0.3"
         },
         "yarl": {
             "hashes": [
@@ -1288,11 +1287,11 @@
         },
         "zipp": {
             "hashes": [
-                "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31",
-                "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"
+                "sha256:bf1dcf6450f873a13e952a29504887c89e6de7506209e5b1bcc3460135d4de19",
+                "sha256:f091755f667055f2d02b32c53771a7a6c8b47e1fdbc4b72a8b9072b3eef8015c"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==3.17.0"
+            "version": "==3.19.2"
         }
     },
     "develop": {

From c7a3a23b1bc7a4b87b09718a744e4e569b0e43e0 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 24 Jun 2024 06:26:53 +0000
Subject: [PATCH 17/29] Bump coverage from 7.4.4 to 7.5.4

Bumps [coverage](https://github.com/nedbat/coveragepy) from 7.4.4 to 7.5.4.
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](https://github.com/nedbat/coveragepy/compare/7.4.4...7.5.4)

---
updated-dependencies:
- dependency-name: coverage
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 107 ++++++++++++++++++++++++++-------------------------
 1 file changed, 54 insertions(+), 53 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index 29aeac4c..0ae7a5ea 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1450,61 +1450,62 @@
                 "toml"
             ],
             "hashes": [
-                "sha256:00838a35b882694afda09f85e469c96367daa3f3f2b097d846a7216993d37f4c",
-                "sha256:0513b9508b93da4e1716744ef6ebc507aff016ba115ffe8ecff744d1322a7b63",
-                "sha256:09c3255458533cb76ef55da8cc49ffab9e33f083739c8bd4f58e79fecfe288f7",
-                "sha256:09ef9199ed6653989ebbcaacc9b62b514bb63ea2f90256e71fea3ed74bd8ff6f",
-                "sha256:09fa497a8ab37784fbb20ab699c246053ac294d13fc7eb40ec007a5043ec91f8",
-                "sha256:0f9f50e7ef2a71e2fae92774c99170eb8304e3fdf9c8c3c7ae9bab3e7229c5cf",
-                "sha256:137eb07173141545e07403cca94ab625cc1cc6bc4c1e97b6e3846270e7e1fea0",
-                "sha256:1f384c3cc76aeedce208643697fb3e8437604b512255de6d18dae3f27655a384",
-                "sha256:201bef2eea65e0e9c56343115ba3814e896afe6d36ffd37bab783261db430f76",
-                "sha256:38dd60d7bf242c4ed5b38e094baf6401faa114fc09e9e6632374388a404f98e7",
-                "sha256:3b799445b9f7ee8bf299cfaed6f5b226c0037b74886a4e11515e569b36fe310d",
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-                "sha256:8130a2aa2acb8788e0b56938786c33c7c98562697bf9f4c7d6e8e5e3a0501e4a",
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-                "sha256:8ce1415194b4a6bd0cdcc3a1dfbf58b63f910dcb7330fe15bdff542c56949f87",
-                "sha256:9ca28a302acb19b6af89e90f33ee3e1906961f94b54ea37de6737b7ca9d8827c",
-                "sha256:a4cdc86d54b5da0df6d3d3a2f0b710949286094c3a6700c21e9015932b81447e",
-                "sha256:aa5b1c1bfc28384f1f53b69a023d789f72b2e0ab1b3787aae16992a7ca21056c",
-                "sha256:aadacf9a2f407a4688d700e4ebab33a7e2e408f2ca04dbf4aef17585389eff3e",
-                "sha256:ae71e7ddb7a413dd60052e90528f2f65270aad4b509563af6d03d53e979feafd",
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-                "sha256:b2c5edc4ac10a7ef6605a966c58929ec6c1bd0917fb8c15cb3363f65aa40e677",
-                "sha256:b4d33f418f46362995f1e9d4f3a35a1b6322cb959c31d88ae56b0298e1c22357",
-                "sha256:b91cbc4b195444e7e258ba27ac33769c41b94967919f10037e6355e998af255c",
-                "sha256:c74880fc64d4958159fbd537a091d2a585448a8f8508bf248d72112723974cbd",
-                "sha256:c901df83d097649e257e803be22592aedfd5182f07b3cc87d640bbb9afd50f49",
-                "sha256:cac99918c7bba15302a2d81f0312c08054a3359eaa1929c7e4b26ebe41e9b286",
-                "sha256:cc4f1358cb0c78edef3ed237ef2c86056206bb8d9140e73b6b89fbcfcbdd40e1",
-                "sha256:ccd341521be3d1b3daeb41960ae94a5e87abe2f46f17224ba5d6f2b8398016cf",
-                "sha256:ce4b94265ca988c3f8e479e741693d143026632672e3ff924f25fab50518dd51",
-                "sha256:cf271892d13e43bc2b51e6908ec9a6a5094a4df1d8af0bfc360088ee6c684409",
-                "sha256:d5ae728ff3b5401cc320d792866987e7e7e880e6ebd24433b70a33b643bb0384",
-                "sha256:d71eec7d83298f1af3326ce0ff1d0ea83c7cb98f72b577097f9083b20bdaf05e",
-                "sha256:d898fe162d26929b5960e4e138651f7427048e72c853607f2b200909794ed978",
-                "sha256:d89d7b2974cae412400e88f35d86af72208e1ede1a541954af5d944a8ba46c57",
-                "sha256:dfa8fe35a0bb90382837b238fff375de15f0dcdb9ae68ff85f7a63649c98527e",
-                "sha256:e0be5efd5127542ef31f165de269f77560d6cdef525fffa446de6f7e9186cfb2",
-                "sha256:fdfafb32984684eb03c2d83e1e51f64f0906b11e64482df3c5db936ce3839d48",
-                "sha256:ff7687ca3d7028d8a5f0ebae95a6e4827c5616b31a4ee1192bdfde697db110d4"
+                "sha256:018a12985185038a5b2bcafab04ab833a9a0f2c59995b3cec07e10074c78635f",
+                "sha256:02ff6e898197cc1e9fa375581382b72498eb2e6d5fc0b53f03e496cfee3fac6d",
+                "sha256:042183de01f8b6d531e10c197f7f0315a61e8d805ab29c5f7b51a01d62782747",
+                "sha256:1014fbf665fef86cdfd6cb5b7371496ce35e4d2a00cda501cf9f5b9e6fced69f",
+                "sha256:1137f46adb28e3813dec8c01fefadcb8c614f33576f672962e323b5128d9a68d",
+                "sha256:16852febd96acd953b0d55fc842ce2dac1710f26729b31c80b940b9afcd9896f",
+                "sha256:2174e7c23e0a454ffe12267a10732c273243b4f2d50d07544a91198f05c48f47",
+                "sha256:2214ee920787d85db1b6a0bd9da5f8503ccc8fcd5814d90796c2f2493a2f4d2e",
+                "sha256:3257fdd8e574805f27bb5342b77bc65578e98cbc004a92232106344053f319ba",
+                "sha256:3684bc2ff328f935981847082ba4fdc950d58906a40eafa93510d1b54c08a66c",
+                "sha256:3a6612c99081d8d6134005b1354191e103ec9705d7ba2754e848211ac8cacc6b",
+                "sha256:3d7564cc09dd91b5a6001754a5b3c6ecc4aba6323baf33a12bd751036c998be4",
+                "sha256:44da56a2589b684813f86d07597fdf8a9c6ce77f58976727329272f5a01f99f7",
+                "sha256:5013ed890dc917cef2c9f765c4c6a8ae9df983cd60dbb635df8ed9f4ebc9f555",
+                "sha256:54317c2b806354cbb2dc7ac27e2b93f97096912cc16b18289c5d4e44fc663233",
+                "sha256:56b4eafa21c6c175b3ede004ca12c653a88b6f922494b023aeb1e836df953ace",
+                "sha256:581ea96f92bf71a5ec0974001f900db495488434a6928a2ca7f01eee20c23805",
+                "sha256:5cd64adedf3be66f8ccee418473c2916492d53cbafbfcff851cbec5a8454b136",
+                "sha256:5df54843b88901fdc2f598ac06737f03d71168fd1175728054c8f5a2739ac3e4",
+                "sha256:65e528e2e921ba8fd67d9055e6b9f9e34b21ebd6768ae1c1723f4ea6ace1234d",
+                "sha256:6aae5cce399a0f065da65c7bb1e8abd5c7a3043da9dceb429ebe1b289bc07806",
+                "sha256:6cfb5a4f556bb51aba274588200a46e4dd6b505fb1a5f8c5ae408222eb416f99",
+                "sha256:7076b4b3a5f6d2b5d7f1185fde25b1e54eb66e647a1dfef0e2c2bfaf9b4c88c8",
+                "sha256:73ca8fbc5bc622e54627314c1a6f1dfdd8db69788f3443e752c215f29fa87a0b",
+                "sha256:79b356f3dd5b26f3ad23b35c75dbdaf1f9e2450b6bcefc6d0825ea0aa3f86ca5",
+                "sha256:7a892be37ca35eb5019ec85402c3371b0f7cda5ab5056023a7f13da0961e60da",
+                "sha256:8192794d120167e2a64721d88dbd688584675e86e15d0569599257566dec9bf0",
+                "sha256:820bc841faa502e727a48311948e0461132a9c8baa42f6b2b84a29ced24cc078",
+                "sha256:8f894208794b164e6bd4bba61fc98bf6b06be4d390cf2daacfa6eca0a6d2bb4f",
+                "sha256:a04e990a2a41740b02d6182b498ee9796cf60eefe40cf859b016650147908029",
+                "sha256:a44963520b069e12789d0faea4e9fdb1e410cdc4aab89d94f7f55cbb7fef0353",
+                "sha256:a6bb74ed465d5fb204b2ec41d79bcd28afccf817de721e8a807d5141c3426638",
+                "sha256:ab73b35e8d109bffbda9a3e91c64e29fe26e03e49addf5b43d85fc426dde11f9",
+                "sha256:aea072a941b033813f5e4814541fc265a5c12ed9720daef11ca516aeacd3bd7f",
+                "sha256:b1ccf5e728ccf83acd313c89f07c22d70d6c375a9c6f339233dcf792094bcbf7",
+                "sha256:b385d49609f8e9efc885790a5a0e89f2e3ae042cdf12958b6034cc442de428d3",
+                "sha256:b3d45ff86efb129c599a3b287ae2e44c1e281ae0f9a9bad0edc202179bcc3a2e",
+                "sha256:b4a474f799456e0eb46d78ab07303286a84a3140e9700b9e154cfebc8f527016",
+                "sha256:b95c3a8cb0463ba9f77383d0fa8c9194cf91f64445a63fc26fb2327e1e1eb088",
+                "sha256:c5986ee7ea0795a4095ac4d113cbb3448601efca7f158ec7f7087a6c705304e4",
+                "sha256:cdd31315fc20868c194130de9ee6bfd99755cc9565edff98ecc12585b90be882",
+                "sha256:cef4649ec906ea7ea5e9e796e68b987f83fa9a718514fe147f538cfeda76d7a7",
+                "sha256:d05c16cf4b4c2fc880cb12ba4c9b526e9e5d5bb1d81313d4d732a5b9fe2b9d53",
+                "sha256:d2e344d6adc8ef81c5a233d3a57b3c7d5181f40e79e05e1c143da143ccb6377d",
+                "sha256:d45d3cbd94159c468b9b8c5a556e3f6b81a8d1af2a92b77320e887c3e7a5d080",
+                "sha256:db14f552ac38f10758ad14dd7b983dbab424e731588d300c7db25b6f89e335b5",
+                "sha256:dbc5958cb471e5a5af41b0ddaea96a37e74ed289535e8deca404811f6cb0bc3d",
+                "sha256:ddbd2f9713a79e8e7242d7c51f1929611e991d855f414ca9996c20e44a895f7c",
+                "sha256:e16f3d6b491c48c5ae726308e6ab1e18ee830b4cdd6913f2d7f77354b33f91c8",
+                "sha256:e2afe743289273209c992075a5a4913e8d007d569a406ffed0bd080ea02b0633",
+                "sha256:e564c2cf45d2f44a9da56f4e3a26b2236504a496eb4cb0ca7221cd4cc7a9aca9",
+                "sha256:ed550e7442f278af76d9d65af48069f1fb84c9f745ae249c1a183c1e9d1b025c"
             ],
+            "index": "pypi",
             "markers": "python_version >= '3.8'",
-            "version": "==7.4.4"
+            "version": "==7.5.4"
         },
         "exceptiongroup": {
             "hashes": [

From b9c3e25a34785c16d03f97aa03d5a2efe80b1bb2 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 24 Jun 2024 06:27:45 +0000
Subject: [PATCH 18/29] Bump types-requests from 2.31.0.20240311 to
 2.32.0.20240622

Bumps [types-requests](https://github.com/python/typeshed) from 2.31.0.20240311 to 2.32.0.20240622.
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-requests
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index 29aeac4c..23acf30d 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1787,12 +1787,12 @@
         },
         "types-requests": {
             "hashes": [
-                "sha256:47872893d65a38e282ee9f277a4ee50d1b28bd592040df7d1fdaffdf3779937d",
-                "sha256:b1c1b66abfb7fa79aae09097a811c4aa97130eb8831c60e47aee4ca344731ca5"
+                "sha256:97bac6b54b5bd4cf91d407e62f0932a74821bc2211f22116d9ee1dd643826caf",
+                "sha256:ed5e8a412fcc39159d6319385c009d642845f250c63902718f605cd90faade31"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.8'",
-            "version": "==2.31.0.20240311"
+            "version": "==2.32.0.20240622"
         },
         "types-urllib3": {
             "hashes": [
@@ -1811,11 +1811,11 @@
         },
         "urllib3": {
             "hashes": [
-                "sha256:450b20ec296a467077128bff42b73080516e71b56ff59a60a02bef2232c4fa9d",
-                "sha256:d0570876c61ab9e520d776c38acbbb5b05a776d3f9ff98a5c8fd5162a444cf19"
+                "sha256:a448b2f64d686155468037e1ace9f2d2199776e17f0a46610480d311f73e3472",
+                "sha256:dd505485549a7a552833da5e6063639d0d177c04f23bc3864e41e5dc5f612168"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==2.2.1"
+            "version": "==2.2.2"
         }
     }
 }

From 374e7e81b935ae6b9bf7895dabc3ed542758ff84 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 9 Jul 2024 11:07:50 +0000
Subject: [PATCH 19/29] --- updated-dependencies: - dependency-name: requests  
 dependency-type: direct:production ...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile      |   2 +-
 Pipfile.lock | 196 +++++++++++++++++++++++++++------------------------
 2 files changed, 106 insertions(+), 92 deletions(-)

diff --git a/Pipfile b/Pipfile
index d610bdf9..f3c1cc89 100644
--- a/Pipfile
+++ b/Pipfile
@@ -27,7 +27,7 @@ pika = "~=1.3"
 pymysql = "~=1.1"
 pyodbc = "~=5.1"
 python-dotenv = "~=1.0"
-requests = "~=2.31"
+requests = "~=2.32"
 slackclient = "~=2.9"
 sqlalchemy = "~=2.0"
 pymongo = "~=4.6.2"
diff --git a/Pipfile.lock b/Pipfile.lock
index fc7e7683..65eca213 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "8ddddbb178d9c2af67075479223a9c3341ac072c5df3f3981f0fe7f0b05d23f0"
+            "sha256": "1a066b053ad2532890b98b76c800494c660b77648726b96fa77e379f271b2c6d"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -198,92 +198,107 @@
         },
         "certifi": {
             "hashes": [
-                "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082",
-                "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"
+                "sha256:5a1e7645bc0ec61a09e26c36f6106dd4cf40c6db3a1fb6352b0244e7fb057c7b",
+                "sha256:c198e21b1289c2ab85ee4e67bb4b4ef3ead0892059901a8d5b622f24a1101e90"
             ],
-            "markers": "python_full_version >= '3.6.0'",
-            "version": "==2023.7.22"
+            "markers": "python_version >= '3.6'",
+            "version": "==2024.7.4"
         },
         "charset-normalizer": {
             "hashes": [
-                "sha256:04e57ab9fbf9607b77f7d057974694b4f6b142da9ed4a199859d9d4d5c63fe96",
-                "sha256:09393e1b2a9461950b1c9a45d5fd251dc7c6f228acab64da1c9c0165d9c7765c",
-                "sha256:0b87549028f680ca955556e3bd57013ab47474c3124dc069faa0b6545b6c9710",
-                "sha256:1000fba1057b92a65daec275aec30586c3de2401ccdcd41f8a5c1e2c87078706",
-                "sha256:1249cbbf3d3b04902ff081ffbb33ce3377fa6e4c7356f759f3cd076cc138d020",
-                "sha256:1920d4ff15ce893210c1f0c0e9d19bfbecb7983c76b33f046c13a8ffbd570252",
-                "sha256:193cbc708ea3aca45e7221ae58f0fd63f933753a9bfb498a3b474878f12caaad",
-                "sha256:1a100c6d595a7f316f1b6f01d20815d916e75ff98c27a01ae817439ea7726329",
-                "sha256:1f30b48dd7fa1474554b0b0f3fdfdd4c13b5c737a3c6284d3cdc424ec0ffff3a",
-                "sha256:203f0c8871d5a7987be20c72442488a0b8cfd0f43b7973771640fc593f56321f",
-                "sha256:246de67b99b6851627d945db38147d1b209a899311b1305dd84916f2b88526c6",
-                "sha256:2dee8e57f052ef5353cf608e0b4c871aee320dd1b87d351c28764fc0ca55f9f4",
-                "sha256:2efb1bd13885392adfda4614c33d3b68dee4921fd0ac1d3988f8cbb7d589e72a",
-                "sha256:2f4ac36d8e2b4cc1aa71df3dd84ff8efbe3bfb97ac41242fbcfc053c67434f46",
-                "sha256:3170c9399da12c9dc66366e9d14da8bf7147e1e9d9ea566067bbce7bb74bd9c2",
-                "sha256:3b1613dd5aee995ec6d4c69f00378bbd07614702a315a2cf6c1d21461fe17c23",
-                "sha256:3bb3d25a8e6c0aedd251753a79ae98a093c7e7b471faa3aa9a93a81431987ace",
-                "sha256:3bb7fda7260735efe66d5107fb7e6af6a7c04c7fce9b2514e04b7a74b06bf5dd",
-                "sha256:41b25eaa7d15909cf3ac4c96088c1f266a9a93ec44f87f1d13d4a0e86c81b982",
-                "sha256:45de3f87179c1823e6d9e32156fb14c1927fcc9aba21433f088fdfb555b77c10",
-                "sha256:46fb8c61d794b78ec7134a715a3e564aafc8f6b5e338417cb19fe9f57a5a9bf2",
-                "sha256:48021783bdf96e3d6de03a6e39a1171ed5bd7e8bb93fc84cc649d11490f87cea",
-                "sha256:4957669ef390f0e6719db3613ab3a7631e68424604a7b448f079bee145da6e09",
-                "sha256:5e86d77b090dbddbe78867a0275cb4df08ea195e660f1f7f13435a4649e954e5",
-                "sha256:6339d047dab2780cc6220f46306628e04d9750f02f983ddb37439ca47ced7149",
-                "sha256:681eb3d7e02e3c3655d1b16059fbfb605ac464c834a0c629048a30fad2b27489",
-                "sha256:6c409c0deba34f147f77efaa67b8e4bb83d2f11c8806405f76397ae5b8c0d1c9",
-                "sha256:7095f6fbfaa55defb6b733cfeb14efaae7a29f0b59d8cf213be4e7ca0b857b80",
-                "sha256:70c610f6cbe4b9fce272c407dd9d07e33e6bf7b4aa1b7ffb6f6ded8e634e3592",
-                "sha256:72814c01533f51d68702802d74f77ea026b5ec52793c791e2da806a3844a46c3",
-                "sha256:7a4826ad2bd6b07ca615c74ab91f32f6c96d08f6fcc3902ceeedaec8cdc3bcd6",
-                "sha256:7c70087bfee18a42b4040bb9ec1ca15a08242cf5867c58726530bdf3945672ed",
-                "sha256:855eafa5d5a2034b4621c74925d89c5efef61418570e5ef9b37717d9c796419c",
-                "sha256:8700f06d0ce6f128de3ccdbc1acaea1ee264d2caa9ca05daaf492fde7c2a7200",
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+                "sha256:ddbb2551d7e0102e7252db79ba445cdab71b26640817ab1e3e3648dad515003b",
+                "sha256:deb6be0ac38ece9ba87dea880e438f25ca3eddfac8b002a2ec3d9183a454e8ae",
+                "sha256:e06ed3eb3218bc64786f7db41917d4e686cc4856944f53d5bdf83a6884432e12",
+                "sha256:e27ad930a842b4c5eb8ac0016b0a54f5aebbe679340c26101df33424142c143c",
+                "sha256:e537484df0d8f426ce2afb2d0f8e1c3d0b114b83f8850e5f2fbea0e797bd82ae",
+                "sha256:eb00ed941194665c332bf8e078baf037d6c35d7c4f3102ea2d4f16ca94a26dc8",
+                "sha256:eb6904c354526e758fda7167b33005998fb68c46fbc10e013ca97f21ca5c8887",
+                "sha256:eb8821e09e916165e160797a6c17edda0679379a4be5c716c260e836e122f54b",
+                "sha256:efcb3f6676480691518c177e3b465bcddf57cea040302f9f4e6e191af91174d4",
+                "sha256:f27273b60488abe721a075bcca6d7f3964f9f6f067c8c4c605743023d7d3944f",
+                "sha256:f30c3cb33b24454a82faecaf01b19c18562b1e89558fb6c56de4d9118a032fd5",
+                "sha256:fb69256e180cb6c8a894fee62b3afebae785babc1ee98b81cdf68bbca1987f33",
+                "sha256:fd1abc0d89e30cc4e02e4064dc67fcc51bd941eb395c502aac3ec19fab46b519",
+                "sha256:ff8fa367d09b717b2a17a052544193ad76cd49979c805768879cb63d9ca50561"
             ],
-            "markers": "python_version >= '3.7'",
-            "version": "==3.2.0"
+            "markers": "python_full_version >= '3.7.0'",
+            "version": "==3.3.2"
         },
         "click": {
             "hashes": [
@@ -517,7 +532,6 @@
                 "sha256:028ff3aadf0609c1fd278d8ea3089299412a7a8b9bd005dd08b9f8285bcb5cfc",
                 "sha256:82fee1fc78add43492d3a1898bfa6d8a904cc97d8427f683ed8e798d07761aa0"
             ],
-            "index": "pypi",
             "markers": "python_version >= '3.5'",
             "version": "==3.7"
         },
@@ -982,11 +996,12 @@
         },
         "requests": {
             "hashes": [
-                "sha256:58cd2187c01e70e6e26505bca751777aa9f2ee0b7f4300988b709f44e013003f",
-                "sha256:942c5a758f98d790eaed1a29cb6eefc7ffb0d1cf7af05c3d2791656dbd6ad1e1"
+                "sha256:dd951ff5ecf3e3b3aa26b40703ba77495dab41da839ae72ef3c8e5d8e2433289",
+                "sha256:fc06670dd0ed212426dfeb94fc1b983d917c4f9847c863f313c9dfaaffb7c23c"
             ],
             "index": "pypi",
-            "version": "==2.31.0"
+            "markers": "python_version >= '3.8'",
+            "version": "==2.32.2"
         },
         "setuptools": {
             "hashes": [
@@ -1193,12 +1208,11 @@
         },
         "urllib3": {
             "hashes": [
-                "sha256:c97dfde1f7bd43a71c8d2a58e369e9b2bf692d1334ea9f9cae55add7d0dd0f84",
-                "sha256:fdb6d215c776278489906c2f8916e6e7d4f5a9b602ccbcfdf7f016fc8da0596e"
+                "sha256:a448b2f64d686155468037e1ace9f2d2199776e17f0a46610480d311f73e3472",
+                "sha256:dd505485549a7a552833da5e6063639d0d177c04f23bc3864e41e5dc5f612168"
             ],
-            "index": "pypi",
-            "markers": "python_version >= '3.7'",
-            "version": "==2.0.7"
+            "markers": "python_version >= '3.8'",
+            "version": "==2.2.2"
         },
         "werkzeug": {
             "hashes": [

From 7c6fd4298f5e2649165969597736540956dbec26 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 9 Jul 2024 12:12:37 +0000
Subject: [PATCH 20/29] Bump mypy from 1.9.0 to 1.10.1

Bumps [mypy](https://github.com/python/mypy) from 1.9.0 to 1.10.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/1.9.0...v1.10.1)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 64 ++++++++++++++++++++++++++--------------------------
 1 file changed, 32 insertions(+), 32 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index 551b487a..467a6021 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1584,37 +1584,37 @@
         },
         "mypy": {
             "hashes": [
-                "sha256:0235391f1c6f6ce487b23b9dbd1327b4ec33bb93934aa986efe8a9563d9349e6",
-                "sha256:190da1ee69b427d7efa8aa0d5e5ccd67a4fb04038c380237a0d96829cb157913",
-                "sha256:2418488264eb41f69cc64a69a745fad4a8f86649af4b1041a4c64ee61fc61129",
-                "sha256:3a3c007ff3ee90f69cf0a15cbcdf0995749569b86b6d2f327af01fd1b8aee9dc",
-                "sha256:3cc5da0127e6a478cddd906068496a97a7618a21ce9b54bde5bf7e539c7af974",
-                "sha256:48533cdd345c3c2e5ef48ba3b0d3880b257b423e7995dada04248725c6f77374",
-                "sha256:49c87c15aed320de9b438ae7b00c1ac91cd393c1b854c2ce538e2a72d55df150",
-                "sha256:4d3dbd346cfec7cb98e6cbb6e0f3c23618af826316188d587d1c1bc34f0ede03",
-                "sha256:571741dc4194b4f82d344b15e8837e8c5fcc462d66d076748142327626a1b6e9",
-                "sha256:587ce887f75dd9700252a3abbc9c97bbe165a4a630597845c61279cf32dfbf02",
-                "sha256:5d741d3fc7c4da608764073089e5f58ef6352bedc223ff58f2f038c2c4698a89",
-                "sha256:5e6061f44f2313b94f920e91b204ec600982961e07a17e0f6cd83371cb23f5c2",
-                "sha256:61758fabd58ce4b0720ae1e2fea5cfd4431591d6d590b197775329264f86311d",
-                "sha256:653265f9a2784db65bfca694d1edd23093ce49740b2244cde583aeb134c008f3",
-                "sha256:68edad3dc7d70f2f17ae4c6c1b9471a56138ca22722487eebacfd1eb5321d612",
-                "sha256:81a10926e5473c5fc3da8abb04119a1f5811a236dc3a38d92015cb1e6ba4cb9e",
-                "sha256:85ca5fcc24f0b4aeedc1d02f93707bccc04733f21d41c88334c5482219b1ccb3",
-                "sha256:a260627a570559181a9ea5de61ac6297aa5af202f06fd7ab093ce74e7181e43e",
-                "sha256:aceb1db093b04db5cd390821464504111b8ec3e351eb85afd1433490163d60cd",
-                "sha256:b685154e22e4e9199fc95f298661deea28aaede5ae16ccc8cbb1045e716b3e04",
-                "sha256:d357423fa57a489e8c47b7c85dfb96698caba13d66e086b412298a1a0ea3b0ed",
-                "sha256:d4d5ddc13421ba3e2e082a6c2d74c2ddb3979c39b582dacd53dd5d9431237185",
-                "sha256:e49499be624dead83927e70c756970a0bc8240e9f769389cdf5714b0784ca6bf",
-                "sha256:e54396d70be04b34f31d2edf3362c1edd023246c82f1730bbf8768c28db5361b",
-                "sha256:f88566144752999351725ac623471661c9d1cd8caa0134ff98cceeea181789f4",
-                "sha256:f8a67616990062232ee4c3952f41c779afac41405806042a8126fe96e098419f",
-                "sha256:fe28657de3bfec596bbeef01cb219833ad9d38dd5393fc649f4b366840baefe6"
+                "sha256:0cd62192a4a32b77ceb31272d9e74d23cd88c8060c34d1d3622db3267679a5d9",
+                "sha256:1b3a2ffce52cc4dbaeee4df762f20a2905aa171ef157b82192f2e2f368eec05d",
+                "sha256:1f8f492d7db9e3593ef42d4f115f04e556130f2819ad33ab84551403e97dd4c0",
+                "sha256:2189ff1e39db399f08205e22a797383613ce1cb0cb3b13d8bcf0170e45b96cc3",
+                "sha256:378c03f53f10bbdd55ca94e46ec3ba255279706a6aacaecac52ad248f98205d3",
+                "sha256:37fd87cab83f09842653f08de066ee68f1182b9b5282e4634cdb4b407266bade",
+                "sha256:3c4c2992f6ea46ff7fce0072642cfb62af7a2484efe69017ed8b095f7b39ef31",
+                "sha256:51a46974340baaa4145363b9e051812a2446cf583dfaeba124af966fa44593f7",
+                "sha256:5bb9cd11c01c8606a9d0b83ffa91d0b236a0e91bc4126d9ba9ce62906ada868e",
+                "sha256:5cc3ca0a244eb9a5249c7c583ad9a7e881aa5d7b73c35652296ddcdb33b2b9c7",
+                "sha256:604282c886497645ffb87b8f35a57ec773a4a2721161e709a4422c1636ddde5c",
+                "sha256:6166a88b15f1759f94a46fa474c7b1b05d134b1b61fca627dd7335454cc9aa6b",
+                "sha256:6bacf8f3a3d7d849f40ca6caea5c055122efe70e81480c8328ad29c55c69e93e",
+                "sha256:6be84c06e6abd72f960ba9a71561c14137a583093ffcf9bbfaf5e613d63fa531",
+                "sha256:701b5f71413f1e9855566a34d6e9d12624e9e0a8818a5704d74d6b0402e66c04",
+                "sha256:71d8ac0b906354ebda8ef1673e5fde785936ac1f29ff6987c7483cfbd5a4235a",
+                "sha256:8addf6313777dbb92e9564c5d32ec122bf2c6c39d683ea64de6a1fd98b90fe37",
+                "sha256:901c89c2d67bba57aaaca91ccdb659aa3a312de67f23b9dfb059727cce2e2e0a",
+                "sha256:97a131ee36ac37ce9581f4220311247ab6cba896b4395b9c87af0675a13a755f",
+                "sha256:a1bbb3a6f5ff319d2b9d40b4080d46cd639abe3516d5a62c070cf0114a457d84",
+                "sha256:a2cbc68cb9e943ac0814c13e2452d2046c2f2b23ff0278e26599224cf164e78d",
+                "sha256:b8edd4e9bbbc9d7b79502eb9592cab808585516ae1bcc1446eb9122656c6066f",
+                "sha256:bd6f629b67bb43dc0d9211ee98b96d8dabc97b1ad38b9b25f5e4c4d7569a0c6a",
+                "sha256:c2ae450d60d7d020d67ab440c6e3fae375809988119817214440033f26ddf7bf",
+                "sha256:d8681909f7b44d0b7b86e653ca152d6dff0eb5eb41694e163c6092124f8246d7",
+                "sha256:e36f229acfe250dc660790840916eb49726c928e8ce10fbdf90715090fe4ae02",
+                "sha256:fe85ed6836165d52ae8b88f99527d3d1b2362e0cb90b005409b8bed90e9059b3"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.8'",
-            "version": "==1.9.0"
+            "version": "==1.10.1"
         },
         "mypy-extensions": {
             "hashes": [
@@ -1821,11 +1821,11 @@
         },
         "typing-extensions": {
             "hashes": [
-                "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0",
-                "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"
+                "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d",
+                "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"
             ],
-            "markers": "python_version < '3.11'",
-            "version": "==4.11.0"
+            "markers": "python_version >= '3.8'",
+            "version": "==4.12.2"
         },
         "urllib3": {
             "hashes": [

From 9b373c2507ecf98492d670719513747b705950f9 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 9 Jul 2024 12:41:29 +0000
Subject: [PATCH 21/29] Bump urllib3 from 2.0.7 to 2.2.2

Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.7 to 2.2.2.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.7...2.2.2)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 1 +
 1 file changed, 1 insertion(+)

diff --git a/Pipfile.lock b/Pipfile.lock
index 10d8beb7..56fab858 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1211,6 +1211,7 @@
                 "sha256:a448b2f64d686155468037e1ace9f2d2199776e17f0a46610480d311f73e3472",
                 "sha256:dd505485549a7a552833da5e6063639d0d177c04f23bc3864e41e5dc5f612168"
             ],
+            "index": "pypi",
             "markers": "python_version >= '3.8'",
             "version": "==2.2.2"
         },

From 074fb67888e142da0c255b027a60476034eefc06 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 9 Jul 2024 12:41:29 +0000
Subject: [PATCH 22/29] Bump sqlalchemy from 2.0.28 to 2.0.31

Bumps [sqlalchemy](https://github.com/sqlalchemy/sqlalchemy) from 2.0.28 to 2.0.31.
- [Release notes](https://github.com/sqlalchemy/sqlalchemy/releases)
- [Changelog](https://github.com/sqlalchemy/sqlalchemy/blob/main/CHANGES.rst)
- [Commits](https://github.com/sqlalchemy/sqlalchemy/commits)

---
updated-dependencies:
- dependency-name: sqlalchemy
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 110 +++++++++++++++++++++++++--------------------------
 1 file changed, 55 insertions(+), 55 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index 10d8beb7..97e334d2 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -515,7 +515,7 @@
                 "sha256:fd096eb7ffef17c456cfa587523c5f92321ae02427ff955bebe9e3c63bc9f0da",
                 "sha256:fe754d231288e1e64323cfad462fcee8f0288654c10bdf4f603a39ed923bef33"
             ],
-            "markers": "platform_machine == 'aarch64' or (platform_machine == 'ppc64le' or (platform_machine == 'x86_64' or (platform_machine == 'amd64' or (platform_machine == 'AMD64' or (platform_machine == 'win32' or platform_machine == 'WIN32')))))",
+            "markers": "python_version < '3.13' and platform_machine == 'aarch64' or (platform_machine == 'ppc64le' or (platform_machine == 'x86_64' or (platform_machine == 'amd64' or (platform_machine == 'AMD64' or (platform_machine == 'win32' or platform_machine == 'WIN32')))))",
             "version": "==3.0.3"
         },
         "gunicorn": {
@@ -1120,59 +1120,59 @@
         },
         "sqlalchemy": {
             "hashes": [
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-                "sha256:0d3dd67b5d69794cfe82862c002512683b3db038b99002171f624712fa71aeaa",
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-                "sha256:1ee8bd6d68578e517943f5ebff3afbd93fc65f7ef8f23becab9fa8fb315afb1d",
-                "sha256:243feb6882b06a2af68ecf4bec8813d99452a1b62ba2be917ce6283852cf701b",
-                "sha256:2858bbab1681ee5406650202950dc8f00e83b06a198741b7c656e63818633526",
-                "sha256:2f60843068e432311c886c5f03c4664acaef507cf716f6c60d5fde7265be9d7b",
-                "sha256:328529f7c7f90adcd65aed06a161851f83f475c2f664a898af574893f55d9e53",
-                "sha256:33157920b233bc542ce497a81a2e1452e685a11834c5763933b440fedd1d8e2d",
-                "sha256:3eba73ef2c30695cb7eabcdb33bb3d0b878595737479e152468f3ba97a9c22a4",
-                "sha256:426f2fa71331a64f5132369ede5171c52fd1df1bd9727ce621f38b5b24f48750",
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-                "sha256:46a3d4e7a472bfff2d28db838669fc437964e8af8df8ee1e4548e92710929adc",
-                "sha256:4a5adf383c73f2d49ad15ff363a8748319ff84c371eed59ffd0127355d6ea1da",
-                "sha256:4b6303bfd78fb3221847723104d152e5972c22367ff66edf09120fcde5ddc2e2",
-                "sha256:56856b871146bfead25fbcaed098269d90b744eea5cb32a952df00d542cdd368",
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+                "sha256:f3ad7f221d8a69d32d197e5968d798217a4feebe30144986af71ada8c548e9fa",
+                "sha256:f43e93057cf52a227eda401251c72b6fbe4756f35fa6bfebb5d73b86881e59b0",
+                "sha256:f68470edd70c3ac3b6cd5c2a22a8daf18415203ca1b036aaeb9b0fb6f54e8298",
+                "sha256:fa4b1af3e619b5b0b435e333f3967612db06351217c58bfb50cee5f003db2a5a",
+                "sha256:fc6b14e8602f59c6ba893980bea96571dd0ed83d8ebb9c4479d9ed5425d562e9"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.7'",
-            "version": "==2.0.28"
+            "version": "==2.0.31"
         },
         "tomli": {
             "hashes": [
@@ -1184,11 +1184,11 @@
         },
         "typing-extensions": {
             "hashes": [
-                "sha256:69b1a937c3a517342112fb4c6df7e72fc39a38e7891a5730ed4985b5214b5475",
-                "sha256:b0abd7c89e8fb96f98db18d86106ff1d90ab692004eb746cf6eda2682f91b3cb"
+                "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d",
+                "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"
             ],
-            "markers": "python_version < '3.11'",
-            "version": "==4.10.0"
+            "markers": "python_version >= '3.8'",
+            "version": "==4.12.2"
         },
         "tzdata": {
             "hashes": [

From a76d8594d634f7d607a29b8137adc14594ac4e69 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 9 Jul 2024 12:41:40 +0000
Subject: [PATCH 23/29] Bump pymongo from 4.6.2 to 4.8.0

Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.6.2 to 4.8.0.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.6.2...4.8.0)

---
updated-dependencies:
- dependency-name: pymongo
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile      |   2 +-
 Pipfile.lock | 138 ++++++++++++++++++++-------------------------------
 2 files changed, 54 insertions(+), 86 deletions(-)

diff --git a/Pipfile b/Pipfile
index f3c1cc89..adf9ebff 100644
--- a/Pipfile
+++ b/Pipfile
@@ -30,7 +30,7 @@ python-dotenv = "~=1.0"
 requests = "~=2.32"
 slackclient = "~=2.9"
 sqlalchemy = "~=2.0"
-pymongo = "~=4.6.2"
+pymongo = "~=4.8.0"
 
 [requires]
 python_version = "3.8"
diff --git a/Pipfile.lock b/Pipfile.lock
index 10d8beb7..d8ad11df 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "1a066b053ad2532890b98b76c800494c660b77648726b96fa77e379f271b2c6d"
+            "sha256": "5f3a4581009af051e6bdb506c8d391863222461a6d0395ee45064a1632a2c8cc"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -837,92 +837,60 @@
         },
         "pymongo": {
             "hashes": [
-                "sha256:097791d5a8d44e2444e0c8c4d6e14570ac11e22bcb833808885a5db081c3dc2a",
-                "sha256:0d002ae456a15b1d790a78bb84f87af21af1cb716a63efb2c446ab6bcbbc48ca",
-                "sha256:0fbdbf2fba1b4f5f1522e9f11e21c306e095b59a83340a69e908f8ed9b450070",
-                "sha256:1849fd6f1917b4dc5dbf744b2f18e41e0538d08dd8e9ba9efa811c5149d665a3",
-                "sha256:18c422e6b08fa370ed9d8670c67e78d01f50d6517cec4522aa8627014dfa38b6",
-                "sha256:1f251f287e6d42daa3654b686ce1fcb6d74bf13b3907c3ae25954978c70f2cd4",
-                "sha256:1f5f4cd2969197e25b67e24d5b8aa2452d381861d2791d06c493eaa0b9c9fcfe",
-                "sha256:1f706c1a644ed33eaea91df0a8fb687ce572b53eeb4ff9b89270cb0247e5d0e1",
-                "sha256:2160d9c8cd20ce1f76a893f0daf7c0d38af093f36f1b5c9f3dcf3e08f7142814",
-                "sha256:2b575fbe6396bbf21e4d0e5fd2e3cdb656dc90c930b6c5532192e9a89814f72d",
-                "sha256:2b65433c90e07dc252b4a55dfd885ca0df94b1cf77c5b8709953ec1983aadc03",
-                "sha256:2f7b98f8d2cf3eeebde738d080ae9b4276d7250912d9751046a9ac1efc9b1ce2",
-                "sha256:311794ef3ccae374aaef95792c36b0e5c06e8d5cf04a1bdb1b2bf14619ac881f",
-                "sha256:362a5adf6f3f938a8ff220a4c4aaa93e84ef932a409abecd837c617d17a5990f",
-                "sha256:397949a9cc85e4a1452f80b7f7f2175d557237177120954eff00bf79553e89d3",
-                "sha256:3a5280f496297537301e78bde250c96fadf4945e7b2c397d8bb8921861dd236d",
-                "sha256:3e03c732cb64b96849310e1d8688fb70d75e2571385485bf2f1e7ad1d309fa53",
-                "sha256:3e9f6e2f3da0a6af854a3e959a6962b5f8b43bbb8113cd0bff0421c5059b3106",
-                "sha256:4522ad69a4ab0e1b46a8367d62ad3865b8cd54cf77518c157631dac1fdc97584",
-                "sha256:477914e13501bb1d4608339ee5bb618be056d2d0e7267727623516cfa902e652",
-                "sha256:4993593de44c741d1e9f230f221fe623179f500765f9855936e4ff6f33571bad",
-                "sha256:4d982c6db1da7cf3018183891883660ad085de97f21490d314385373f775915b",
-                "sha256:4e2129ec8f72806751b621470ac5d26aaa18fae4194796621508fa0e6068278a",
-                "sha256:4fa30494601a6271a8b416554bd7cde7b2a848230f0ec03e3f08d84565b4bf8c",
-                "sha256:5379ca6fd325387a34cda440aec2bd031b5ef0b0aa2e23b4981945cff1dab84c",
-                "sha256:579508536113dbd4c56e4738955a18847e8a6c41bf3c0b4ab18b51d81a6b7be8",
-                "sha256:57c05f2e310701fc17ae358caafd99b1830014e316f0242d13ab6c01db0ab1c2",
-                "sha256:5c2f258489de12a65b81e1b803a531ee8cf633fa416ae84de65cd5f82d2ceb37",
-                "sha256:5db133d6ec7a4f7fc7e2bd098e4df23d7ad949f7be47b27b515c9fb9301c61e4",
-                "sha256:5f6bcd2d012d82d25191a911a239fd05a8a72e8c5a7d81d056c0f3520cad14d1",
-                "sha256:6125f73503407792c8b3f80165f8ab88a4e448d7d9234c762681a4d0b446fcb4",
-                "sha256:64ec3e2dcab9af61bdbfcb1dd863c70d1b0c220b8e8ac11df8b57f80ee0402b3",
-                "sha256:658f6c028edaeb02761ebcaca8d44d519c22594b2a51dcbc9bd2432aa93319e3",
-                "sha256:68109c13176749fbbbbbdb94dd4a58dcc604db6ea43ee300b2602154aebdd55f",
-                "sha256:6ceaaff4b812ae368cf9774989dea81b9bbb71e5bed666feca6a9f3087c03e49",
-                "sha256:707d28a822b918acf941cff590affaddb42a5d640614d71367c8956623a80cbc",
-                "sha256:7640d176ee5b0afec76a1bda3684995cb731b2af7fcfd7c7ef8dc271c5d689af",
-                "sha256:7dd63f7c2b3727541f7f37d0fb78d9942eb12a866180fbeb898714420aad74e2",
-                "sha256:8110b78fc4b37dced85081d56795ecbee6a7937966e918e05e33a3900e8ea07d",
-                "sha256:84593447a5c5fe7a59ba86b72c2c89d813fbac71c07757acdf162fbfd5d005b9",
-                "sha256:8caa73fb19070008e851a589b744aaa38edd1366e2487284c61158c77fdf72af",
-                "sha256:91ddf95cedca12f115fbc5f442b841e81197d85aa3cc30b82aee3635a5208af2",
-                "sha256:94637941fe343000f728e28d3fe04f1f52aec6376b67b85583026ff8dab2a0e0",
-                "sha256:97d81d357e1a2a248b3494d52ebc8bf15d223ee89d59ee63becc434e07438a24",
-                "sha256:991e406db5da4d89fb220a94d8caaf974ffe14ce6b095957bae9273c609784a0",
-                "sha256:9aebddb2ec2128d5fc2fe3aee6319afef8697e0374f8a1fcca3449d6f625e7b4",
-                "sha256:9d511db310f43222bc58d811037b176b4b88dc2b4617478c5ef01fea404f8601",
-                "sha256:9eec7140cf7513aa770ea51505d312000c7416626a828de24318fdcc9ac3214c",
-                "sha256:9f86ba0c781b497a3c9c886765d7b6402a0e3ae079dd517365044c89cd7abb06",
-                "sha256:a509db602462eb736666989739215b4b7d8f4bb8ac31d0bffd4be9eae96c63ef",
-                "sha256:aaecfafb407feb6f562c7f2f5b91f22bfacba6dd739116b1912788cff7124c4a",
-                "sha256:ab7d01ac832a1663dad592ccbd92bb0f0775bc8f98a1923c5e1a7d7fead495af",
-                "sha256:ac20dd0c7b42555837c86f5ea46505f35af20a08b9cf5770cd1834288d8bd1b4",
-                "sha256:b2d445f1cf147331947cc35ec10342f898329f29dd1947a3f8aeaf7e0e6878d1",
-                "sha256:b2dd8c874927a27995f64a3b44c890e8a944c98dec1ba79eab50e07f1e3f801b",
-                "sha256:ba052446a14bd714ec83ca4e77d0d97904f33cd046d7bb60712a6be25eb31dbb",
-                "sha256:bea62f03a50f363265a7a651b4e2a4429b4f138c1864b2d83d4bf6f9851994be",
-                "sha256:bff601fbfcecd2166d9a2b70777c2985cb9689e2befb3278d91f7f93a0456cae",
-                "sha256:c3797e0a628534e07a36544d2bfa69e251a578c6d013e975e9e3ed2ac41f2d95",
-                "sha256:c43205e85cbcbdf03cff62ad8f50426dd9d20134a915cfb626d805bab89a1844",
-                "sha256:c68bf4a399e37798f1b5aa4f6c02886188ef465f4ac0b305a607b7579413e366",
-                "sha256:c9519c9d341983f3a1bd19628fecb1d72a48d8666cf344549879f2e63f54463b",
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-                "sha256:d7d227a60b00925dd3aeae4675575af89c661a8e89a1f7d1677e57eba4a3693c",
-                "sha256:df813f0c2c02281720ccce225edf39dc37855bf72cdfde6f789a1d1cf32ffb4b",
-                "sha256:e0b208ebec3b47ee78a5c836e2e885e8c1e10f8ffd101aaec3d63997a4bdcd04",
-                "sha256:e571434633f99a81e081738721bb38e697345281ed2f79c2f290f809ba3fbb2f",
-                "sha256:e78af59fd0eb262c2a5f7c7d7e3b95e8596a75480d31087ca5f02f2d4c6acd19",
-                "sha256:e942945e9112075a84d2e2d6e0d0c98833cdcdfe48eb8952b917f996025c7ffa",
-                "sha256:ebd343ca44982d480f1e39372c48e8e263fc6f32e9af2be456298f146a3db715",
-                "sha256:ed694c0d1977cb54281cb808bc2b247c17fb64b678a6352d3b77eb678ebe1bd9",
-                "sha256:ee30a9d4c27a88042d0636aca0275788af09cc237ae365cd6ebb34524bddb9cc",
-                "sha256:f1febca6f79e91feafc572906871805bd9c271b6a2d98a8bb5499b6ace0befed",
-                "sha256:f251db26c239aec2a4d57fbe869e0a27b7f6b5384ec6bf54aeb4a6a5e7408234",
-                "sha256:f3bae553ca39ed52db099d76acd5e8566096064dc7614c34c9359bb239ec4081",
-                "sha256:f673b64a0884edcc56073bda0b363428dc1bf4eb1b5e7d0b689f7ec6173edad6",
-                "sha256:fa0bbbfbd1f8ebbd5facaa10f9f333b20027b240af012748555148943616fdf3",
-                "sha256:fb24abcd50501b25d33a074c1790a1389b6460d2509e4b240d03fd2e5c79f463",
-                "sha256:fbafe3a1df21eeadb003c38fc02c1abf567648b6477ec50c4a3c042dca205371",
-                "sha256:fe010154dfa9e428bd2fb3e9325eff2216ab20a69ccbd6b5cac6785ca2989161"
+                "sha256:0fc18b3a093f3db008c5fea0e980dbd3b743449eee29b5718bc2dc15ab5088bb",
+                "sha256:16e5019f75f6827bb5354b6fef8dfc9d6c7446894a27346e03134d290eb9e758",
+                "sha256:180d5eb1dc28b62853e2f88017775c4500b07548ed28c0bd9c005c3d7bc52526",
+                "sha256:18c9d8f975dd7194c37193583fd7d1eb9aea0c21ee58955ecf35362239ff31ac",
+                "sha256:236bbd7d0aef62e64caf4b24ca200f8c8670d1a6f5ea828c39eccdae423bc2b2",
+                "sha256:284d0717d1a7707744018b0b6ee7801b1b1ff044c42f7be7a01bb013de639470",
+                "sha256:2ecd71b9226bd1d49416dc9f999772038e56f415a713be51bf18d8676a0841c8",
+                "sha256:31e4d21201bdf15064cf47ce7b74722d3e1aea2597c6785882244a3bb58c7eab",
+                "sha256:3b5802151fc2b51cd45492c80ed22b441d20090fb76d1fd53cd7760b340ff554",
+                "sha256:3c68fe128a171493018ca5c8020fc08675be130d012b7ab3efe9e22698c612a1",
+                "sha256:3ed1c316718a2836f7efc3d75b4b0ffdd47894090bc697de8385acd13c513a70",
+                "sha256:408b2f8fdbeca3c19e4156f28fff1ab11c3efb0407b60687162d49f68075e63c",
+                "sha256:417369ce39af2b7c2a9c7152c1ed2393edfd1cbaf2a356ba31eb8bcbd5c98dd7",
+                "sha256:454f2295875744dc70f1881e4b2eb99cdad008a33574bc8aaf120530f66c0cde",
+                "sha256:47ec8c3f0a7b2212dbc9be08d3bf17bc89abd211901093e3ef3f2adea7de7a69",
+                "sha256:4bf58e6825b93da63e499d1a58de7de563c31e575908d4e24876234ccb910eba",
+                "sha256:519d1bab2b5e5218c64340b57d555d89c3f6c9d717cecbf826fb9d42415e7750",
+                "sha256:52b4108ac9469febba18cea50db972605cc43978bedaa9fea413378877560ef8",
+                "sha256:658d0170f27984e0d89c09fe5c42296613b711a3ffd847eb373b0dbb5b648d5f",
+                "sha256:6b50040d9767197b77ed420ada29b3bf18a638f9552d80f2da817b7c4a4c9c68",
+                "sha256:7148419eedfea9ecb940961cfe465efaba90595568a1fb97585fb535ea63fe2b",
+                "sha256:77f53429515d2b3e86dcc83dadecf7ff881e538c168d575f3688698a8707b80a",
+                "sha256:87075a1feb1e602e539bdb1ef8f4324a3427eb0d64208c3182e677d2c0718b6f",
+                "sha256:8b18c8324809539c79bd6544d00e0607e98ff833ca21953df001510ca25915d1",
+                "sha256:9097c331577cecf8034422956daaba7ec74c26f7b255d718c584faddd7fa2e3c",
+                "sha256:920d4f8f157a71b3cb3f39bc09ce070693d6e9648fb0e30d00e2657d1dca4e49",
+                "sha256:9365166aa801c63dff1a3cb96e650be270da06e3464ab106727223123405510f",
+                "sha256:940d456774b17814bac5ea7fc28188c7a1338d4a233efbb6ba01de957bded2e8",
+                "sha256:aec2b9088cdbceb87e6ca9c639d0ff9b9d083594dda5ca5d3c4f6774f4c81b33",
+                "sha256:af3e98dd9702b73e4e6fd780f6925352237f5dce8d99405ff1543f3771201704",
+                "sha256:b6564780cafd6abeea49759fe661792bd5a67e4f51bca62b88faab497ab5fe89",
+                "sha256:b747c0e257b9d3e6495a018309b9e0c93b7f0d65271d1d62e572747f4ffafc88",
+                "sha256:bf821bd3befb993a6db17229a2c60c1550e957de02a6ff4dd0af9476637b2e4d",
+                "sha256:c6b804bb4f2d9dc389cc9e827d579fa327272cdb0629a99bfe5b83cb3e269ebf",
+                "sha256:cc8b8582f4209c2459b04b049ac03c72c618e011d3caa5391ff86d1bda0cc486",
+                "sha256:cd39455b7ee70aabee46f7399b32ab38b86b236c069ae559e22be6b46b2bbfc4",
+                "sha256:d0cf61450feadca81deb1a1489cb1a3ae1e4266efd51adafecec0e503a8dcd84",
+                "sha256:d18d86bc9e103f4d3d4f18b85a0471c0e13ce5b79194e4a0389a224bb70edd53",
+                "sha256:d5428dbcd43d02f6306e1c3c95f692f68b284e6ee5390292242f509004c9e3a8",
+                "sha256:de3a860f037bb51f968de320baef85090ff0bbb42ec4f28ec6a5ddf88be61871",
+                "sha256:e0061af6e8c5e68b13f1ec9ad5251247726653c5af3c0bbdfbca6cf931e99216",
+                "sha256:e5df28f74002e37bcbdfdc5109799f670e4dfef0fb527c391ff84f078050e7b5",
+                "sha256:e6a720a3d22b54183352dc65f08cd1547204d263e0651b213a0a2e577e838526",
+                "sha256:e8400587d594761e5136a3423111f499574be5fd53cf0aefa0d0f05b180710b0",
+                "sha256:e84bc7707492f06fbc37a9f215374d2977d21b72e10a67f1b31893ec5a140ad8",
+                "sha256:ef7225755ed27bfdb18730c68f6cb023d06c28f2b734597480fb4c0e500feb6f",
+                "sha256:f2b7bec27e047e84947fbd41c782f07c54c30c76d14f3b8bf0c89f7413fac67a",
+                "sha256:f2fbdb87fe5075c8beb17a5c16348a1ea3c8b282a5cb72d173330be2fecf22f5",
+                "sha256:f5bf0eb8b6ef40fa22479f09375468c33bebb7fe49d14d9c96c8fd50355188b0",
+                "sha256:fdc20cd1e1141b04696ffcdb7c71e8a4a665db31fe72e51ec706b3bdd2d09f36"
             ],
             "index": "pypi",
-            "markers": "python_version >= '3.7'",
-            "version": "==4.6.2"
+            "markers": "python_version >= '3.8'",
+            "version": "==4.8.0"
         },
         "pymysql": {
             "hashes": [

From b175e959421bc74133fcfcad9f21940206a7e9d7 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 9 Jul 2024 12:53:23 +0000
Subject: [PATCH 24/29] Bump requests from 2.31.0 to 2.32.3

Bumps [requests](https://github.com/psf/requests) from 2.31.0 to 2.32.3.
- [Release notes](https://github.com/psf/requests/releases)
- [Changelog](https://github.com/psf/requests/blob/main/HISTORY.md)
- [Commits](https://github.com/psf/requests/compare/v2.31.0...v2.32.3)

---
updated-dependencies:
- dependency-name: requests
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index 75aa9bcf..09719536 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -997,12 +997,12 @@
         },
         "requests": {
             "hashes": [
-                "sha256:dd951ff5ecf3e3b3aa26b40703ba77495dab41da839ae72ef3c8e5d8e2433289",
-                "sha256:fc06670dd0ed212426dfeb94fc1b983d917c4f9847c863f313c9dfaaffb7c23c"
+                "sha256:55365417734eb18255590a9ff9eb97e9e1da868d4ccd6402399eaf68af20a760",
+                "sha256:70761cfe03c773ceb22aa2f671b4757976145175cdfca038c02654d061d6dcc6"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.8'",
-            "version": "==2.32.2"
+            "version": "==2.32.3"
         },
         "setuptools": {
             "hashes": [

From 8a6d1e683f136996acb91190580fb888cbdecd33 Mon Sep 17 00:00:00 2001
From: Stuart McHattie <sm49@sanger.ac.uk>
Date: Wed, 17 Jul 2024 16:42:30 +0100
Subject: [PATCH 25/29] Remove obsolete version declaration in
 docker-compose.yml

---
 docker-compose.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/docker-compose.yml b/docker-compose.yml
index 44a837d5..7c2fcbbc 100644
--- a/docker-compose.yml
+++ b/docker-compose.yml
@@ -1,4 +1,3 @@
-version: "3.8"
 services:
   lighthouse:
     build: .

From 5af7f0e71dead9b347c71277c18273b37d7ad9fb Mon Sep 17 00:00:00 2001
From: Stuart McHattie <sm49@sanger.ac.uk>
Date: Wed, 17 Jul 2024 16:45:42 +0100
Subject: [PATCH 26/29] Switch to using the built-in compose function of Docker

---
 dependencies/down.sh | 2 +-
 dependencies/up.sh   | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/dependencies/down.sh b/dependencies/down.sh
index c78f584c..579118d2 100755
--- a/dependencies/down.sh
+++ b/dependencies/down.sh
@@ -1,4 +1,4 @@
 #!/bin/bash
 
 cd "$(dirname "$0")"
-docker-compose down
+docker compose down
diff --git a/dependencies/up.sh b/dependencies/up.sh
index a96ce2a0..24777410 100755
--- a/dependencies/up.sh
+++ b/dependencies/up.sh
@@ -1,7 +1,7 @@
 #!/bin/bash
 
 cd "$(dirname "$0")"
-docker-compose up -d
+docker compose up -d
 
 # Initialise the MongoDB replica set after 5 seconds
 sleep 5

From 1f8d843edcd0fbd7f178639300833979d279b055 Mon Sep 17 00:00:00 2001
From: Stuart McHattie <sm49@sanger.ac.uk>
Date: Wed, 17 Jul 2024 17:05:06 +0100
Subject: [PATCH 27/29] Use authentication headers for all SS v2 requests

---
 lighthouse/helpers/plates.py         |  7 +++++--
 tests/helpers/test_plates_helpers.py | 10 +++++++---
 2 files changed, 12 insertions(+), 5 deletions(-)

diff --git a/lighthouse/helpers/plates.py b/lighthouse/helpers/plates.py
index e12062c6..f87dee9a 100644
--- a/lighthouse/helpers/plates.py
+++ b/lighthouse/helpers/plates.py
@@ -429,10 +429,11 @@ def convert_json_response_into_dict(barcode: str, json) -> dict:
 
 def get_from_ss_plates_samples_info(plate_barcode: str) -> requests.Response:
     ss_url: str = f"{app.config['SS_URL']}/api/v2/labware"
+    headers = _ss_headers()
 
     try:
         params = {"filter[barcode]": plate_barcode, "include": "purpose,receptacles.aliquots.sample"}
-        response = requests.get(f"{ss_url}", params=params)
+        response = requests.get(f"{ss_url}", params=params, headers=headers)
 
         LOGGER.debug(f"Response status code: {response.status_code}")
 
@@ -814,7 +815,9 @@ def plate_exists_in_ss_with_barcode(barcode: str) -> bool:
         params = {
             "filter[barcode]": barcode,
         }
-        response = requests.get(f"{ss_url}/api/v2/labware", params=params)
+        headers = _ss_headers()
+
+        response = requests.get(f"{ss_url}/api/v2/labware", params=params, headers=headers)
 
         LOGGER.debug(f"Response status code: {response.status_code}")
 
diff --git a/tests/helpers/test_plates_helpers.py b/tests/helpers/test_plates_helpers.py
index 9cd511d0..5c3d368e 100644
--- a/tests/helpers/test_plates_helpers.py
+++ b/tests/helpers/test_plates_helpers.py
@@ -73,6 +73,7 @@
 
 # ---------- test helpers ----------
 
+SS_AUTH_HEADER_MATCHER = responses.matchers.header_matcher({"X-Sequencescape-Client-Id": "development"})
 
 @pytest.fixture
 def mock_event_helpers():
@@ -143,7 +144,7 @@ def test_get_from_ss_plates_samples_info_success(app, mocked_responses):
         )
         json = {"data": ["plate data"], "included": ["plate includes"]}
 
-        mocked_responses.add(responses.GET, ss_url, json=json, status=HTTPStatus.OK)
+        mocked_responses.add(responses.GET, ss_url, json=json, status=HTTPStatus.OK, match=[SS_AUTH_HEADER_MATCHER])
 
         response = get_from_ss_plates_samples_info(barcode)
         assert response.json() == json
@@ -163,7 +164,7 @@ def test_convert_json_response_into_dict():
     assert data == {"data": {"barcode": barcode, "positive_control": "A1", "negative_control": "B1"}, "error": None}
 
 
-def test_classify_samples_by_centre(app, samples, mocked_responses):
+def test_classify_samples_by_centre(samples):
     samples, _ = samples
     assert list(classify_samples_by_centre(samples).keys()) == ["centre_1", "centre_2"]
     assert len(classify_samples_by_centre(samples)["centre_1"]) == 11
@@ -177,7 +178,7 @@ def test_centre_prefixes_for_samples(samples):
     assert actual == ["centre_1", "centre_2"]
 
 
-def test_centre_prefix(app, centres, mocked_responses):
+def test_centre_prefix(app, centres):
     with app.app_context():
         assert get_centre_prefix("CENTRE_1") == "TC1"
         assert get_centre_prefix("centre_2") == "TC2"
@@ -1057,6 +1058,7 @@ def test_format_plate_destination(app, mocked_responses):
             f"{ss_url}?{urllib.parse.quote('filter[barcode]')}={plate_barcode}",
             json={"data": ["barcode exists!"]},
             status=HTTPStatus.OK,
+            match=[SS_AUTH_HEADER_MATCHER]
         )
         response = {
             "plate_barcode": "dest_123",
@@ -1095,12 +1097,14 @@ def test_plate_exists_in_ss_with_barcode(app, mocked_responses):
             f"{ss_url}?{urllib.parse.quote('filter[barcode]')}={first_plate_barcode}",
             json={"data": ["barcode exists!"]},
             status=HTTPStatus.OK,
+            match=[SS_AUTH_HEADER_MATCHER]
         )
         mocked_responses.add(
             responses.GET,
             f"{ss_url}?{urllib.parse.quote('filter[barcode]')}={second_plate_barcode}",
             json={"data": []},
             status=HTTPStatus.OK,
+            match=[SS_AUTH_HEADER_MATCHER]
         )
 
         assert plate_exists_in_ss_with_barcode(barcode=first_plate_barcode) is True

From efdd3523f5d301e34ce7c70771b5ff5438df12a1 Mon Sep 17 00:00:00 2001
From: Stuart McHattie <sm49@sanger.ac.uk>
Date: Wed, 17 Jul 2024 17:06:23 +0100
Subject: [PATCH 28/29] Allow linting of test file

---
 tests/helpers/test_plates_helpers.py | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/tests/helpers/test_plates_helpers.py b/tests/helpers/test_plates_helpers.py
index 5c3d368e..7a8b0661 100644
--- a/tests/helpers/test_plates_helpers.py
+++ b/tests/helpers/test_plates_helpers.py
@@ -75,6 +75,7 @@
 
 SS_AUTH_HEADER_MATCHER = responses.matchers.header_matcher({"X-Sequencescape-Client-Id": "development"})
 
+
 @pytest.fixture
 def mock_event_helpers():
     root = "lighthouse.helpers.plates"
@@ -1058,7 +1059,7 @@ def test_format_plate_destination(app, mocked_responses):
             f"{ss_url}?{urllib.parse.quote('filter[barcode]')}={plate_barcode}",
             json={"data": ["barcode exists!"]},
             status=HTTPStatus.OK,
-            match=[SS_AUTH_HEADER_MATCHER]
+            match=[SS_AUTH_HEADER_MATCHER],
         )
         response = {
             "plate_barcode": "dest_123",
@@ -1097,14 +1098,14 @@ def test_plate_exists_in_ss_with_barcode(app, mocked_responses):
             f"{ss_url}?{urllib.parse.quote('filter[barcode]')}={first_plate_barcode}",
             json={"data": ["barcode exists!"]},
             status=HTTPStatus.OK,
-            match=[SS_AUTH_HEADER_MATCHER]
+            match=[SS_AUTH_HEADER_MATCHER],
         )
         mocked_responses.add(
             responses.GET,
             f"{ss_url}?{urllib.parse.quote('filter[barcode]')}={second_plate_barcode}",
             json={"data": []},
             status=HTTPStatus.OK,
-            match=[SS_AUTH_HEADER_MATCHER]
+            match=[SS_AUTH_HEADER_MATCHER],
         )
 
         assert plate_exists_in_ss_with_barcode(barcode=first_plate_barcode) is True

From 549e6c83a3fd360dd263b9c8d8875354e15bb985 Mon Sep 17 00:00:00 2001
From: Stuart McHattie <sm49@sanger.ac.uk>
Date: Mon, 22 Jul 2024 11:50:40 +0100
Subject: [PATCH 29/29] Update release version to 2.36.0

---
 .release-version | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.release-version b/.release-version
index d07233cc..3a05135c 100644
--- a/.release-version
+++ b/.release-version
@@ -1 +1 @@
-2.35.1
+2.36.0