From 8ca3eeb95e5408247b5e6797c7545330d2c23463 Mon Sep 17 00:00:00 2001
From: Katy Taylor <kt17@sanger.ac.uk>
Date: Tue, 6 Feb 2024 13:53:28 +0000
Subject: [PATCH] Add cell counting functionality onto the LRC PBMC Defrost PBS
 plate

---
 config/purposes/scrna_core_cdna_prep.wip.yml | 27 ++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/config/purposes/scrna_core_cdna_prep.wip.yml b/config/purposes/scrna_core_cdna_prep.wip.yml
index 81865ad94..a5ec716c4 100644
--- a/config/purposes/scrna_core_cdna_prep.wip.yml
+++ b/config/purposes/scrna_core_cdna_prep.wip.yml
@@ -14,6 +14,33 @@ LRC PBMC Cryostor:
 # Plate containing defrosted PBMCs in PBS buffer.
 LRC PBMC Defrost PBS:
   :asset_type: plate
+  :label_template: plate_cellaca_qc # creates QC1 up to QC4 barcodes
+  :file_links:
+    - name: 'Download Cellaca Input QC1'
+      id: cellaca_input_file
+      params:
+        page: 0
+    - name: 'Download Cellaca Input QC2'
+      id: cellaca_input_file
+      params:
+        page: 1
+    - name: 'Download Cellaca Input QC3'
+      id: cellaca_input_file
+      params:
+        page: 2
+    - name: 'Download Cellaca Input QC4'
+      id: cellaca_input_file
+      params:
+        page: 3
+  :qc_thresholds:
+    viability:
+      units: '%'
+      default_threshold: 50
+    live_cell_count:
+      name: Cell count
+      units: 'cells/ml'
+      default_threshold: 400000
+      decimal_places: 0
   :stock_plate: false
   :input_plate: false
 # Plate containing pooled PBMCs from different donors.