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Use bioformats reader as a fallback and allow more filetypes #826

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jstriebel opened this issue Nov 28, 2022 · 1 comment
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Use bioformats reader as a fallback and allow more filetypes #826

jstriebel opened this issue Nov 28, 2022 · 1 comment

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@jstriebel
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Detailed Description

Affected library: webknossos

Currently, ds.add_layer_from_images() and Dataset.from_images() can use the pims bioformats reader when use_bioformats is explicitly set to true. It would be great to use the bioformats reader as a fallback and for unsupported datatypes anyways. We should check if the listed file suffixes should be monkey-patched to contain all possible ones (see also soft-matter/pims#357), or if a second try using the BioformatsReader directly is more appropriate.

@jstriebel
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Done via #829

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