TileDBSC-Py 0.1.3

Additional performance optimizations

What's Changed

• More REST-server call-avoidance by @johnkerl in #223

Full Changelog: 0.1.2...0.1.3

TileDBSC-Py 0.1.2

Performance optimizations

What's Changed

• Optimize constructor time for tiledb-cloud case by @johnkerl in #222
• Correctly support element deletion in TileDB Cloud by @johnkerl in #220
• Allow relative flag as argument by @johnkerl in #221

Full Changelog: 0.1.1...0.1.2

TileDBSC-Py 0.1.1

Update to most recent TileDB Core version

What's Changed

• Depend on TileDB-Py 0.16.2 by @johnkerl in #219

• Strict static typing by @gsakkis in #216

• Editable-install notes by @johnkerl in #218

Full Changelog: 0.1.0...0.1.1

TileDBSC-Py 0.1.0

Align 0.1.x release numbering with tiledbsc-r repo

https://github.com/TileDB-Inc/tiledbsc/releases has already been using 0.1.x numbering; so should we (we've been using 0.0.x).

Full Changelog: 0.0.9...0.1.0

TileDBSC-Py 0.0.9

What's Changed

API:

• Support quiet/info/debug levels for data ingest by @johnkerl in #211
• Support group member deletion by @johnkerl in #210
• Allow skip ingest if exists by @johnkerl in #212
• Correctly use delitem and delattr by @johnkerl in #215

Internals:

• Initial type checking with mypy on CI and fixes by @gsakkis in #197
• Use keyword-only args by @johnkerl in #209
• Add C++ ManagedQuery by @gspowley in #194

Full Changelog: 0.0.8...0.0.9

TIleDBSC-Py 0.0.8

Performance improvement for reads

Includes #208 which is a fix for the issue mentioned in the 0.0.7 release notes.

Details

• Optimize queries for allow_duplicates=False by @johnkerl in #208
• Pre-commit hooks by @gsakkis in #193

Full Changelog: 0.0.7...0.0.8

TileDBSC-Py 0.0.7

Notebook/UX updates

Note

The allow_duplicates=False change comes with a performance update to be made today in a 0.0.8 follow-on, using #208.

What's Changed

Features:

• Allow users to add new matrices to obsm,varm,obsp,varp by @johnkerl in #203
• Disallow duplicates by @johnkerl in #199

Documentation:

• Collection-slice with heterogeneous data by @johnkerl in #207
• Expressive cell-count queries by @johnkerl in #183
• Make example docs more notebook-centric, part 1 of 3 by @johnkerl in #205
• Neaten batch-query example by @johnkerl in #206

Notebook UX:

• Make a simple default display for SOMA objects in notebooks by @johnkerl in #204
• Make soma.uns display by default in notebooks by @johnkerl in #200
• Make it easier to see progress indicators in notebook ingests by @johnkerl in #202
• Neaten logger-init code by @johnkerl in #196

Admin:

• SOMA-consolidator script by @johnkerl in #198

Full Changelog: 0.0.6...0.0.7

TileDBSC-Py 0.0.6

Update to TileDB-Py 0.16.1

As mentioned in the 0.0.5 release notes there was one known issue in a dependent library to be addressed. This release pulls in that fix.

As well, AnnData bool fields in obs/var are now stored as TILEDB_BOOL.

Details

• Use bool attrs from tiledb-py 0.16.0 by @johnkerl in #190
• Use logging.info for ingest/outgest prints by @johnkerl in #186
• Update to tiledb-py 0.16.1 by @johnkerl in #195

Full Changelog: 0.0.5...0.0.6

TileDBSC-Py 0.0.5

Update to TileDB-Py 0.16.0

Status

There is a known issue which will be addressed in an upcoming 0.16.1.

Key changes

• or queries -- see #191 for an example
• Validation of I/O on tiledb:// URIs -- see #189

Details

• Add isort & flake8 to CI by @gsakkis in #185
• More flake8 findings by @johnkerl in #187
• Fix populate-soco --relative by @johnkerl in #188
• tiledb-cloud testing results by @johnkerl in #189
• Lint tools by @gsakkis in #192
• Update to tiledb-py 0.16.0 by @johnkerl in #191

Full Changelog: 0.0.4...0.0.5

TileDBSC-Py 0.0.4

Slice-query/batch-query examples

What's Changed

• Note soma.attribute_filter is now soma.query
• Preliminary SOMA-collection slice/batch queries by @johnkerl in #173
• Trivial internal name-neaten by @johnkerl in #179
• Include doc info on pip-install by @johnkerl in #180
• Uniformization examples by @johnkerl in #161
• Refactor C++ code by @gspowley in #182
• Documentation proofreads by @johnkerl in #181
• Lint findings by @johnkerl in #184

Full Changelog: 0.0.3...0.0.4