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database page update thoughts #3421

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ctb opened this issue Dec 7, 2024 · 0 comments

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ctb commented Dec 7, 2024 •

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we need to update the databases page, perhaps incrementally.

add AllTheBacteria - AllTheBacteria v0.2 sourmash databases: draft #3247
update GenBank - new GenBank databases: draft #3283
update GTDB to rs220 - new GTDB databases for rs220: draft #3246
add protein databases for GTDB
add human and animal genomes - Add human (and animal) reference genome to prepared databases #2717

more -

I think we should consider moving to a template-based approach, e.g. with jinja, so we don't edit so much markdown by hand
and/or JSON descriptions of databases
and/or support scaled=10k or scaled=100k downloads, perhaps via OSF

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