You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Now that the buildutils.rs file contains ~standardized utilities for sketch building, it would be useful to look back at the sourmash python layer parameter string parsing + sketching to compare strategies and make sure we're not missing anything. The goal is to standardize on good behavior we can add to sourmash core.
I think sketch_factory may have some better handling of protein vs dna defaults, here we only have a single default set of parameters at the rust level (dna,k=31,scaled=1000)
Now that the
buildutils.rs
file contains ~standardized utilities for sketch building, it would be useful to look back at the sourmash python layer parameter string parsing + sketching to compare strategies and make sure we're not missing anything. The goal is to standardize on good behavior we can add to sourmash core.BuildCollection
(and associatedBuildManifest
) holds the template sketches and has methods to populate with sequence.signatures_for_sketch_factory
.also related: #113
The text was updated successfully, but these errors were encountered: