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allow merging multiple files into single sketch? #160

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bluegenes opened this issue Dec 18, 2024 · 0 comments
Open

allow merging multiple files into single sketch? #160

bluegenes opened this issue Dec 18, 2024 · 0 comments

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@bluegenes
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= create merged sketches directly.

Use cases:

  • read1/read2
  • sequences from virus segments that we'd like in a single sketch

To add, we would need to enable downloading + sketching a list of accessions/urls:

  1. modify csv reading to allow merged format (';'-separated list of urls/accessions?)
  2. add InputData struct or similar that could hold multiple AccessionData/GBAssemblyData? or just use vec
  3. make dl_sketch_merged or modify dl_sketch_assembly_accession to loop
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