build-libantimonyjs-github-actions.yml

name: build-libantimoyjs-github-actions
run-name: ${{ github.actor }} is building libantimonyjs
on: [push]
jobs:
  build-new-version-antimonyjs:
    runs-on: ubuntu-latest
    env:
       EMSDK: emsdk
       EMSDK_NODE: emsdk/node/16.20.0_64bit/bin/node
       SBML_VERS: "5.20.0"
       ANT_VERS: "2.13.4"
    steps:
      - uses: actions/checkout@v4
      - name: get emscripten
        run: git clone https://github.com/emscripten-core/emsdk.git 
      - name: change emsdk script permissions
        run: chmod +x emsdk
        working-directory: emsdk
      - name: install emscripten sdk
        run: ./emsdk install 3.1.20
        working-directory: emsdk
      - name: activate emscripten
        run: ./emsdk activate 3.1.20
        working-directory: emsdk
      - run: echo "$GITHUB_WORKSPACE/emsdk/upstream/emscripten" >> $GITHUB_PATH
      - run: echo "$GITHUB_WORKSPACE/emsdk" >> $GITHUB_PATH
      - name: confirm emscripten works
        run: emcc -v
      - run: echo $PATH
      - run: echo $EMSDK_NODE
      - run: mkdir install
      - run: wget https://github.com/libexpat/libexpat/releases/download/R_2_2_10/expat-2.2.10.tar.bz2
      - run: tar -xf expat-2.2.10.tar.bz2
      - run: mv expat-2.2.10 expat
      - name: make expat build dir
        run: mkdir build
        working-directory: expat
      - name: build expat lib
        run: emcmake cmake .. -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/expat
        working-directory: expat/build
      - name: Compile expat lib
        run: emmake make
        working-directory: expat/build  
      - name: install expat lib
        run: emmake make install
        working-directory: expat/build
      - name: Get libSBML
        run: wget https://github.com/sbmlteam/libsbml/archive/refs/tags/v$SBML_VERS.zip 
      - run: unzip v$SBML_VERS.zip
      - run: mv libsbml-$SBML_VERS libsbml
      - name: make libsbml build dir
        run: mkdir build
        working-directory: libsbml
      - name: build libsbml library
        run: emcmake cmake .. -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/sbml -DCMAKE_BUILD_TYPE=Release -DWITH_CPP_NAMESPACE=ON -DWITH_EXPAT=ON -DWITH_LIBXML=OFF -DLIBSBML_SKIP_SHARED_LIBRARY=ON -DENABLE_ARRAYS=ON -DENABLE_COMP=ON -DENABLE_DISTRIB=ON -DENABLE_FBC=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DENABLE_QUAL=ON -DWITH_STABLE_PACKAGES=ON -DWITH_SWIG=OFF -DEXPAT_INCLUDE_DIR=$GITHUB_WORKSPACE/install/expat/include -DEXPAT_LIBRARY=$GITHUB_WORKSPACE/install/expat/lib/libexpat.a
        working-directory: libsbml/build
      - name: compile libsbml lib
        run: emmake make
        working-directory: libsbml/build  
      - name: install libsbml
        run: emmake make install
        working-directory: libsbml/build
      - name: Get antimony
        run: wget https://github.com/sys-bio/antimony/archive/refs/tags/v$ANT_VERS.zip
      - run: unzip v$ANT_VERS.zip
      - run: mv antimony-$ANT_VERS/ antimony
      - name: make antimony build dir 
        run: mkdir build 
        working-directory: antimony
      - name: Build antimony library
        run: emcmake cmake .. -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/antimony -DEXPAT_LIBRARY=$GITHUB_WORKSPACE/install/expat/lib/libexpat.a -DLIBSBML_INCLUDE_DIR=$GITHUB_WORKSPACE/install/sbml/include -DLIBSBML_INSTALL_DIR=$GITHUB_WORKSPACE/install/sbml -DLIBSBML_LIBRARY=$GITHUB_WORKSPACE/install/sbml/lib/libsbml-static.a -DWITH_CELLML=OFF -DWITH_CHECK=OFF -DWITH_COMP_SBML=ON -DWITH_LIBSBML_COMPRESSION=OFF -DWITH_LIBSBML_EXPAT=ON -DWITH_LIBSBML_LIBXML=OFF -DWITH_LIBSBML_XERCES=OFF -DWITH_PYTHON=OFF -DWITH_QTANTIMONY=OFF -DWITH_SBML=ON -DWITH_STATIC_SBML=ON -DWITH_SWIG=OFF
        working-directory: antimony/build
      - name: Compile antimony lib
        run: emmake make
        working-directory: antimony/build
      - name: Install antimony lib
        run: emmake make install
        working-directory: antimony/build
      - name: Generate antimony javascript and wasm files
        run: emcc -Oz -sDISABLE_EXCEPTION_CATCHING=0 -sMODULARIZE=1 -sEXPORT_NAME=libantimony -sALLOW_MEMORY_GROWTH=1 -I$GITHUB_WORKSPACE/install/antimony/include -I$GITHUB_WORKSPACE/install/sbml/include -I$GITHUB_WORKSPACE/install/expat/include $GITHUB_WORKSPACE/install/antimony/lib/libantimony.a $GITHUB_WORKSPACE/install/sbml/lib/libsbml-static.a $GITHUB_WORKSPACE/install/expat/lib/libexpat.a -o libantimony.js -sEXPORTED_FUNCTIONS=_loadString,_loadAntimonyString,_loadSBMLString,_clearPreviousLoads,_getAntimonyString,_getSBMLString,_getCompSBMLString,_getLastError,_getWarnings,_getSBMLInfoMessages,_getSBMLWarnings,_freeAll,_malloc,_free -sEXPORTED_RUNTIME_METHODS=ccall,cwrap,allocateUTF8,UTF8ToString
        working-directory: install
      - name: List build libantimonyjs files
        run: ls -l
        working-directory: install
      - name: Copy libantimonyjs to test dir
        run: cp libantimony.* $GITHUB_WORKSPACE/test
        working-directory: install
      - name: check built files exist
        run: ls -l
        working-directory: test
      - name: Check node is available
        run: node -v
        working-directory: test
      - name: run tests
        run: node test_antimony.js >> results.txt
        working-directory: test
      - name: output test results
        run: cat results.txt
        working-directory: test
      - name: Check test results
        run: grep 'Fail- 0' results.txt
        working-directory: test
      - name: Check test results 2
        run: grep 'Fail- 1' results.txt
        working-directory: test