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build-libantimonyjs-github-actions.yml
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name: build-libantimonyjs-github-actions
run-name: ${{ github.actor }} is building libantimonyjs
on:
workflow_dispatch:
inputs:
antimony_version:
description: 'Antimony version number'
required: true
default: '2.13.4'
libsbml_version:
description: 'LibSBML version number'
required: true
default: '5.20.0'
jobs:
build-new-version-antimonyjs:
runs-on: ubuntu-latest
env:
EMSDK: emsdk
EMSCRIPTEN_VERS: '3.1.20'
EMSDK_NODE: emsdk/node/16.20.0_64bit/bin/node
SBML_VERS: ${{ inputs.libsbml_version }}
ANT_VERS: ${{ inputs.antimony_version }}
steps:
- uses: actions/checkout@v4
- name: get emscripten
run: git clone https://github.com/emscripten-core/emsdk.git
- name: change emsdk script permissions
run: chmod +x emsdk
working-directory: emsdk
- name: install emscripten sdk
run: ./emsdk install $EMSCRIPTEN_VERS
working-directory: emsdk
- name: activate emscripten
run: ./emsdk activate $EMSCRIPTEN_VERS
working-directory: emsdk
- run: echo "$GITHUB_WORKSPACE/emsdk/upstream/emscripten" >> $GITHUB_PATH
- run: echo "$GITHUB_WORKSPACE/emsdk" >> $GITHUB_PATH
- name: confirm emscripten works
run: emcc -v
- run: echo $PATH
- run: echo $EMSDK_NODE
- run: mkdir install
- run: wget https://github.com/libexpat/libexpat/releases/download/R_2_2_10/expat-2.2.10.tar.bz2
- run: tar -xf expat-2.2.10.tar.bz2
- run: mv expat-2.2.10 expat
- name: make expat build dir
run: mkdir build
working-directory: expat
- name: build expat lib
run: emcmake cmake .. -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/expat
working-directory: expat/build
- name: Compile expat lib
run: emmake make
working-directory: expat/build
- name: install expat lib
run: emmake make install
working-directory: expat/build
- name: Get libSBML
run: wget https://github.com/sbmlteam/libsbml/archive/refs/tags/v$SBML_VERS.zip
- run: unzip v$SBML_VERS.zip
- run: mv libsbml-$SBML_VERS libsbml
- name: make libsbml build dir
run: mkdir build
working-directory: libsbml
- name: build libsbml library
run: emcmake cmake .. -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/sbml -DCMAKE_BUILD_TYPE=Release -DWITH_CPP_NAMESPACE=ON -DWITH_EXPAT=ON -DWITH_LIBXML=OFF -DLIBSBML_SKIP_SHARED_LIBRARY=ON -DENABLE_ARRAYS=ON -DENABLE_COMP=ON -DENABLE_DISTRIB=ON -DENABLE_FBC=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DENABLE_QUAL=ON -DWITH_STABLE_PACKAGES=ON -DWITH_SWIG=OFF -DEXPAT_INCLUDE_DIR=$GITHUB_WORKSPACE/install/expat/include -DEXPAT_LIBRARY=$GITHUB_WORKSPACE/install/expat/lib/libexpat.a
working-directory: libsbml/build
- name: compile libsbml lib
run: emmake make
working-directory: libsbml/build
- name: install libsbml
run: emmake make install
working-directory: libsbml/build
- name: Get antimony
run: wget https://github.com/sys-bio/antimony/archive/refs/tags/v$ANT_VERS.zip
- run: unzip v$ANT_VERS.zip
- run: mv antimony-$ANT_VERS/ antimony
- name: make antimony build dir
run: mkdir build
working-directory: antimony
- name: Build antimony library
run: emcmake cmake .. -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/antimony -DEXPAT_LIBRARY=$GITHUB_WORKSPACE/install/expat/lib/libexpat.a -DLIBSBML_INCLUDE_DIR=$GITHUB_WORKSPACE/install/sbml/include -DLIBSBML_INSTALL_DIR=$GITHUB_WORKSPACE/install/sbml -DLIBSBML_LIBRARY=$GITHUB_WORKSPACE/install/sbml/lib/libsbml-static.a -DWITH_CELLML=OFF -DWITH_CHECK=OFF -DWITH_COMP_SBML=ON -DWITH_LIBSBML_COMPRESSION=OFF -DWITH_LIBSBML_EXPAT=ON -DWITH_LIBSBML_LIBXML=OFF -DWITH_LIBSBML_XERCES=OFF -DWITH_PYTHON=OFF -DWITH_QTANTIMONY=OFF -DWITH_SBML=ON -DWITH_STATIC_SBML=ON -DWITH_SWIG=OFF
working-directory: antimony/build
- name: Compile antimony lib
run: emmake make
working-directory: antimony/build
- name: Install antimony lib
run: emmake make install
working-directory: antimony/build
- name: Generate antimony javascript and wasm files
run: emcc -Oz -sDISABLE_EXCEPTION_CATCHING=0 -sMODULARIZE=1 -sEXPORT_NAME=libantimony -sALLOW_MEMORY_GROWTH=1 -I$GITHUB_WORKSPACE/install/antimony/include -I$GITHUB_WORKSPACE/install/sbml/include -I$GITHUB_WORKSPACE/install/expat/include $GITHUB_WORKSPACE/install/antimony/lib/libantimony.a $GITHUB_WORKSPACE/install/sbml/lib/libsbml-static.a $GITHUB_WORKSPACE/install/expat/lib/libexpat.a -o libantimony.js -sEXPORTED_FUNCTIONS=_loadString,_loadAntimonyString,_loadSBMLString,_clearPreviousLoads,_getAntimonyString,_getSBMLString,_getCompSBMLString,_getLastError,_getWarnings,_getSBMLInfoMessages,_getSBMLWarnings,_freeAll,_malloc,_free -sEXPORTED_RUNTIME_METHODS=ccall,cwrap,allocateUTF8,UTF8ToString
working-directory: install
- name: List build libantimonyjs files
run: ls -l
working-directory: install
- name: Copy libantimonyjs to test dir
run: cp libantimony.* $GITHUB_WORKSPACE/test
working-directory: install
- name: check built files exist
run: ls -l
working-directory: test
- name: Check node is available
run: node -v
working-directory: test
- name: run tests
run: node test_antimony.js >> results.txt
working-directory: test
- name: output test results
run: cat results.txt
working-directory: test
- name: Check test results
run: grep 'Fail- 0' results.txt
working-directory: test
- name: Commit new libantimony files
run: mkdir v$ANT_VERS
working-directory: release
- name: Copy libantimonyjs to release dir
run: cp libantimony.* $GITHUB_WORKSPACE/release/v$ANT_VERS
working-directory: install
- name: generate ReleaseInfo.txt
run: echo "libantimonyjs release $ANT_VERS" > v$ANT_VERS/ReleaseInfo.txt
working-directory: release
- run: echo "libSBML source- $SBML_VERS" >> v$ANT_VERS/ReleaseInfo.txt
working-directory: release
- run: echo "Antimony source- $ANT_VERS" >> v$ANT_VERS/ReleaseInfo.txt
working-directory: release
- run: echo "Emscripten version- $EMSCRIPTEN_VERS" >> v$ANT_VERS/ReleaseInfo.txt
working-directory: release
- run: echo "Following methods are available- From Antimony library - _loadString, _loadAntimonyString, _loadSBMLString, _clearPreviousLoads, _getAntimonyString, _freeAll, _getSBMLString, _getCompSBMLString, _getLastError, _getWarnings, _getSBMLInfoMessages, _getSBMLWarnings." >> v$ANT_VERS/ReleaseInfo.txt
working-directory: release
- run: echo "From Emscripten - _malloc, _free, ccall, cwrap, allocateUTF8, UTF8ToString." >> v$ANT_VERS/ReleaseInfo.txt
working-directory: release
- run: cp -f v$ANT_VERS/ReleaseInfo.txt $GITHUB_WORKSPACE/docs
working-directory: release
- name: Copy libantimonyjs to docs dir
run: cp -f libantimony.* $GITHUB_WORKSPACE/docs
working-directory: install
- name: Check in changes
run: |
date > generated.txt
git config user.name github-actions
git config user.email [email protected]
git add release/v$ANT_VERS/libantimony.js release/v$ANT_VERS/libantimony.wasm release/v$ANT_VERS/ReleaseInfo.txt
git commit -m "new build for antimony v$ANT_VERS" release/v$ANT_VERS/libantimony.js release/v$ANT_VERS/libantimony.wasm release/v$ANT_VERS/ReleaseInfo.txt docs/libantimony.js docs/libantimony.wasm docs/ReleaseInfo.txt
git push