diff --git a/prometheus.data-commons.org/metadata/aggregate_config.json b/prometheus.data-commons.org/metadata/aggregate_config.json index 2b86d311d4..2d65f85d95 100644 --- a/prometheus.data-commons.org/metadata/aggregate_config.json +++ b/prometheus.data-commons.org/metadata/aggregate_config.json @@ -338,7 +338,7 @@ "disease_type": "path:disease_type", "primary_site": "path:primary_site", "subject_id": "path:submitter_id", - "subject_apollo_id": "", + "subject_apollo_id": "path:submitter_id", "subject_race": "path:demographic.race", "subject_gender": "path:demographic.gender", "subject_ethnicity": "path:demographic.ethnicity", @@ -388,6 +388,113 @@ "subject_type_of_exposure": "path:exposures[*].exposure_type", "commons_url": "proteomic.datacommons.cancer.gov" } + }, + "VMOAT-study-level-metadata": { + "mds_url": "https://externalgen3.prometheus.data-commons.org/", + "commons_url": "externalgen3.prometheus.data-commons.org", + "adapter": "gen3", + "config": { + "guid_type": "VMOAT_promethueus_study_metadata", + "study_field": "gen3_discovery" + }, + "keep_original_fields": false, + "field_mappings": { + "authz": "path:authz", + "tags": "path:tags", + "_unique_id": "path:_unique_id", + "study_id": "path:study_id", + "study_description": "path:study_description", + "full_name": "path:full_name", + "short_name": "path:short_name", + "commons": "path:commons", + "study_url": "path:study_url", + "data_source" : "path:data_source", + "_subjects_count": { + "path": "_subjects_count", + "default": 0 + }, + "__manifest": "path:__manifest", + "commons_url": "externalgen3.prometheus.data-commons.org" + } + }, + "VMOAT-subject-level-metadata": { + "mds_url": "https://externalgen3.prometheus.data-commons.org/", + "commons_url": "externalgen3.prometheus.data-commons.org", + "adapter": "gen3", + "config": { + "guid_type": "VMOAT_promethueus_study_metadata", + "study_field": "gen3_discovery" + }, + "keep_original_fields": false, + "field_mappings": { + "authz": "path:authz", + "tags": "path:tags", + "_unique_id": "path:_unique_id", + "commons": "path:commons", + "subject_id": "path:_unique_id", + "subject_apollo_id": "path:apollo_id", + "subject_type_of_exposure": "path:exposure_type", + "subject_chemical_agents_of_exposure": "path:exposure_agent", + "data_source" : "path:data_source", + "commons_url": "externalgen3.prometheus.data-commons.org" + } + }, + "Metabolomic-study-level-metadata": { + "mds_url": "https://externalgen3.prometheus.data-commons.org/", + "commons_url": "externalgen3.prometheus.data-commons.org", + "adapter": "gen3", + "config": { + "guid_type": "Metabolomic_promethueus_study_metadata", + "study_field": "gen3_discovery" + }, + "keep_original_fields": false, + "field_mappings": { + "authz": "path:authz", + "tags": "path:tags", + "_unique_id": "path:_unique_id", + "study_id": "path:study_id", + "study_description": "path:study_description", + "full_name": "path:full_name", + "short_name": "path:short_name", + "commons": "path:commons", + "study_url": "path:study_url", + "data_source" : "path:data_source", + "_subjects_count": { + "path": "_subjects_count", + "default": 0 + }, + "__manifest": "path:__manifest", + "commons_url": "externalgen3.prometheus.data-commons.org" + } + }, + "Metabolomic-subject-level-metadata": { + "mds_url": "https://externalgen3.prometheus.data-commons.org/", + "commons_url": "externalgen3.prometheus.data-commons.org", + "adapter": "gen3", + "config": { + "guid_type": "Metabolomic_promethueus_subject_metadata", + "study_field": "gen3_discovery" + }, + "keep_original_fields": false, + "field_mappings": { + "authz": "path:authz", + "tags": "path:tags", + "_unique_id": "path:_unique_id", + "commons": "path:commons", + "subject_id": "path:subject_id", + "subject_apollo_id": "path:apollo_id", + "subject_race": "", + "subject_gender": "path:gender", + "subject_ethnicity": "", + "subject_metastasis": "", + "subject_cancer_type": "", + "subject_cancer_grade": "", + "subject_cancer_stage": "", + "subject_year_of_birth": "path:year_of_birth", + "subject_primary_disease": "", + "data_source" : "path:data_source", + "commons_url": "externalgen3.prometheus.data-commons.org" + } } } }