Fix IDPH-vaccine-to-S3 ETL

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 5.2.3

Notes to tag/commit: 5.2.4

Generated: 2023-03-29

Bug Fixes

• Fix IDPH-vaccine-to-S3 ETL to handle null values (#274)

Fix IDPH-vaccine ETL

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 5.2.2

Notes to tag/commit: 5.2.3

Generated: 2023-03-28

5.2.2

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 5.2.1

Notes to tag/commit: 5.2.2

Generated: 2023-03-06

Dependency Updates

• Update vac tracker ETL to the new dataset URL (#273)

Improvements

• add citation to google mobility plot (#270)

5.2.1

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 5.2.0

Notes to tag/commit: 5.2.1

Generated: 2022-06-09

Bug Fixes

• Fix cityofchicago ETL bug when there is existing data (#269)

Add `cityofchicago` ETL

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 5.1.6

Notes to tag/commit: 5.2.0

Generated: 2022-06-08

New Features

• Add cityofchicago ETL (#265)

5.1.6

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 5.1.5

Notes to tag/commit: 5.1.6

Generated: 2022-06-03

Improvements

• Updated google_mobility.ipynb notebook with fixed google mobility data table name (#268 )
• Updated IL_tab_charts.ipynb with fixed google mobility data table name (#267)

5.1.5

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 5.1.4

Notes to tag/commit: 5.1.5

Generated: 2022-05-17

Improvements

• Added country mapping name for North Korea in the script of country_codes_utils.py

5.1.4

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 5.1.3

Notes to tag/commit: 5.1.4

Generated: 2022-03-21

Improvements

• Update the exception logic for pm.sample() in the prediction part.

• Use 3 initialization methods to run prediction model:

1. default initialization method which is jitter+adapt_diag. It uses test value plus a uniform jitter in [-1, 1] as starting point in each chain.
2. adapt_diag: Start with a identity mass matrix and then adapt a diagonal based on the variance of the tuning samples. All chains use the test value (usually the prior mean) as starting point.
3. advi+adapt_diag: Run ADVI and then adapt the resulting diagonal mass matrix based on the sample variance of the tuning samples.

5.1.3

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 5.1.2

Notes to tag/commit: 5.1.3

Generated: 2022-03-16

Improvements

• add init="adapt_diag" to pm.sample to avoid the Mass matrix contains zeros on the diagonal error. (#262)

jitter+adapt_diag made initialization much more sensitive, causing ValueError: Mass matrix contains zeros on the diagonal to appear more frequently.

5.1.2

Release Notes

For: uc-cdis/covid19-tools

Notes since tag: 5.1.0

Notes to tag/commit: 5.1.1

Generated: 2022-03-16

Improvements

• Add logs to idph Hospital Util (#261 )
• Add gender mapping in idph vaccine (#261 )