From 71aac257fe870a948b2f88925fb05fc9560ae041 Mon Sep 17 00:00:00 2001 From: Chris Flerin Date: Tue, 26 Jan 2021 12:06:51 +0100 Subject: [PATCH] Remove submodules from CI tests --- .github/workflows/bbknn.yml | 2 -- .github/workflows/bbknn_scenic.yml | 2 -- .github/workflows/decontx.yml | 2 -- .github/workflows/harmony.yml | 2 -- .github/workflows/mnncorrect.yml | 2 -- .github/workflows/scenic.yml | 2 -- .github/workflows/scenic_multiruns.yml | 2 -- .github/workflows/single_sample.yml | 2 -- .github/workflows/single_sample_decontx.yml | 2 -- .github/workflows/single_sample_decontx_scrublet.yml | 2 -- .github/workflows/single_sample_param_exploration.yml | 2 -- .github/workflows/single_sample_scenic.yml | 2 -- .github/workflows/single_sample_scenic_multiruns.yml | 2 -- .github/workflows/single_sample_scrublet.yml | 2 -- 14 files changed, 28 deletions(-) diff --git a/.github/workflows/bbknn.yml b/.github/workflows/bbknn.yml index d71bf0d2..2c6f77f2 100644 --- a/.github/workflows/bbknn.yml +++ b/.github/workflows/bbknn.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0' diff --git a/.github/workflows/bbknn_scenic.yml b/.github/workflows/bbknn_scenic.yml index 1f874e8e..74271a0e 100644 --- a/.github/workflows/bbknn_scenic.yml +++ b/.github/workflows/bbknn_scenic.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0' diff --git a/.github/workflows/decontx.yml b/.github/workflows/decontx.yml index 4a1a787b..39ef0eee 100644 --- a/.github/workflows/decontx.yml +++ b/.github/workflows/decontx.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0' diff --git a/.github/workflows/harmony.yml b/.github/workflows/harmony.yml index a952eeb5..3193e562 100644 --- a/.github/workflows/harmony.yml +++ b/.github/workflows/harmony.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0' diff --git a/.github/workflows/mnncorrect.yml b/.github/workflows/mnncorrect.yml index d47811fc..4640c989 100644 --- a/.github/workflows/mnncorrect.yml +++ b/.github/workflows/mnncorrect.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0' diff --git a/.github/workflows/scenic.yml b/.github/workflows/scenic.yml index 82703c35..854dc639 100644 --- a/.github/workflows/scenic.yml +++ b/.github/workflows/scenic.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0' diff --git a/.github/workflows/scenic_multiruns.yml b/.github/workflows/scenic_multiruns.yml index d8cf866a..b7e02f4b 100644 --- a/.github/workflows/scenic_multiruns.yml +++ b/.github/workflows/scenic_multiruns.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0' diff --git a/.github/workflows/single_sample.yml b/.github/workflows/single_sample.yml index 1149884c..1afa41c2 100644 --- a/.github/workflows/single_sample.yml +++ b/.github/workflows/single_sample.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0' diff --git a/.github/workflows/single_sample_decontx.yml b/.github/workflows/single_sample_decontx.yml index 3e8c891b..ea763ca2 100644 --- a/.github/workflows/single_sample_decontx.yml +++ b/.github/workflows/single_sample_decontx.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0' diff --git a/.github/workflows/single_sample_decontx_scrublet.yml b/.github/workflows/single_sample_decontx_scrublet.yml index 84d48fe5..a34c8485 100644 --- a/.github/workflows/single_sample_decontx_scrublet.yml +++ b/.github/workflows/single_sample_decontx_scrublet.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0' diff --git a/.github/workflows/single_sample_param_exploration.yml b/.github/workflows/single_sample_param_exploration.yml index ae2d12f5..87407c62 100644 --- a/.github/workflows/single_sample_param_exploration.yml +++ b/.github/workflows/single_sample_param_exploration.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0' diff --git a/.github/workflows/single_sample_scenic.yml b/.github/workflows/single_sample_scenic.yml index 36a3288a..03eeb7cc 100644 --- a/.github/workflows/single_sample_scenic.yml +++ b/.github/workflows/single_sample_scenic.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0' diff --git a/.github/workflows/single_sample_scenic_multiruns.yml b/.github/workflows/single_sample_scenic_multiruns.yml index 6ac0d90e..f3044683 100644 --- a/.github/workflows/single_sample_scenic_multiruns.yml +++ b/.github/workflows/single_sample_scenic_multiruns.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0' diff --git a/.github/workflows/single_sample_scrublet.yml b/.github/workflows/single_sample_scrublet.yml index 59455e2a..9c2e2872 100644 --- a/.github/workflows/single_sample_scrublet.yml +++ b/.github/workflows/single_sample_scrublet.yml @@ -17,8 +17,6 @@ jobs: steps: - uses: actions/checkout@v2 - with: - submodules: true - name: Install Nextflow run: | export NXF_VER='20.10.0'